Wall clock time and date at job start Tue Mar 31 2020 23:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 120.00020 * 2 1 4 4 H 1.48499 * 109.47577 * 264.93340 * 3 2 1 5 5 H 1.48499 * 109.47311 * 24.93461 * 3 2 1 6 6 H 1.48500 * 109.47062 * 144.93259 * 3 2 1 7 7 C 1.38809 * 120.00085 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00254 * 170.23744 * 7 2 1 9 9 N 1.36938 * 120.00206 * 350.24346 * 7 2 1 10 10 C 1.46872 * 125.36149 * 349.29542 * 9 7 2 11 11 C 1.54157 * 106.40222 * 197.81712 * 10 9 7 12 12 H 1.09005 * 109.27895 * 89.74093 * 11 10 9 13 13 O 1.40782 * 110.25703 * 210.33556 * 11 10 9 14 14 C 1.41326 * 118.40181 * 67.72017 * 13 11 10 15 15 C 1.51975 * 111.53824 * 56.93489 * 14 13 11 16 16 N 1.44958 * 111.88477 * 319.32558 * 15 14 13 17 17 C 1.34776 * 117.32410 * 203.69036 * 16 15 14 18 18 O 1.21279 * 119.99859 * 176.64528 * 17 16 15 19 19 C 1.50702 * 119.99923 * 356.64612 * 17 16 15 20 20 C 1.47199 * 109.46753 * 180.02562 * 19 17 16 21 21 C 8.59165 * 99.83395 * 211.73931 * 2 1 3 22 22 C 9.56816 * 105.72834 * 214.83564 * 2 1 3 23 23 C 1.39530 * 120.14300 * 330.86314 * 22 21 20 24 24 C 1.37972 * 119.85725 * 179.74816 * 23 22 21 25 25 C 1.38343 * 120.14234 * 0.54853 * 24 23 22 26 26 C 1.38346 * 120.28426 * 359.70084 * 25 24 23 27 27 C 1.37974 * 120.14195 * 0.02562 * 26 25 24 28 28 C 1.44547 * 125.35125 * 23.70698 * 16 15 14 29 29 H 1.09005 * 109.48193 * 105.85240 * 28 16 15 30 30 C 1.46783 * 125.36732 * 169.27705 * 9 7 2 31 31 H 0.97007 * 120.00049 * 359.97438 * 1 2 3 32 32 H 1.09000 * 110.07663 * 317.05850 * 10 9 7 33 33 H 1.09000 * 110.07434 * 78.59143 * 10 9 7 34 34 H 1.09000 * 109.06316 * 177.46833 * 14 13 11 35 35 H 1.09005 * 109.06305 * 296.40829 * 14 13 11 36 36 H 1.09001 * 108.99432 * 79.94243 * 15 14 13 37 37 H 1.08994 * 108.99865 * 198.70014 * 15 14 13 38 38 H 1.08998 * 109.47331 * 300.00409 * 19 17 16 39 39 H 1.09003 * 109.46883 * 59.99921 * 19 17 16 40 40 H 1.08000 * 120.07491 * 0.02562 * 23 22 21 41 41 H 1.08004 * 119.93441 * 180.25180 * 24 23 22 42 42 H 1.08000 * 119.86286 * 179.72130 * 25 24 23 43 43 H 1.08004 * 119.92893 * 180.02562 * 26 25 24 44 44 H 1.08001 * 120.07451 * 179.97438 * 27 26 25 45 45 H 1.08996 * 109.82975 * 59.37781 * 30 9 7 46 46 H 1.09003 * 109.82847 * 298.40378 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6048 1.9847 -1.3945 5 1 1.3982 2.6812 0.5902 6 1 3.4901 1.4734 0.8044 7 6 2.0102 -1.2021 -0.0005 8 1 3.0785 -1.2088 -0.1591 9 7 1.3405 -2.3796 0.1999 10 6 -0.0545 -2.4991 0.6436 11 6 -0.2259 -3.9425 1.1570 12 1 0.0128 -3.9771 2.2200 13 8 -1.5493 -4.3780 0.9544 14 6 -1.9973 -4.5729 -0.3717 15 6 -1.1179 -5.5626 -1.1179 16 7 0.2875 -5.3670 -0.8216 17 6 1.1787 -5.8043 -1.7332 18 8 2.3640 -5.6113 -1.5635 19 6 0.7023 -6.5331 -2.9632 20 6 1.8602 -6.9034 -3.7933 21 6 2.7836 -7.1994 -4.4533 22 6 3.9099 -7.5594 -5.2609 23 6 4.4557 -8.8404 -5.1710 24 6 5.5377 -9.1826 -5.9557 25 6 6.0885 -8.2553 -6.8221 26 6 5.5552 -6.9820 -6.9122 27 6 4.4698 -6.6289 -6.1371 28 6 0.8115 -4.7417 0.3717 29 1 1.2326 -5.5044 1.0268 30 6 1.9034 -3.7211 0.0048 31 1 -0.4850 0.8401 0.0004 32 1 -0.2536 -1.7901 1.4472 33 1 -0.7299 -2.3169 -0.1924 34 1 -3.0196 -4.9505 -0.3502 35 1 -1.9827 -3.6175 -0.8964 36 1 -1.4030 -6.5754 -0.8332 37 1 -1.2752 -5.4393 -2.1894 38 1 0.1653 -7.4340 -2.6667 39 1 0.0374 -5.8853 -3.5346 40 1 4.0294 -9.5639 -4.4918 41 1 5.9587 -10.1751 -5.8900 42 1 6.9382 -8.5267 -7.4310 43 1 5.9895 -6.2627 -7.5909 44 1 4.0546 -5.6344 -6.2080 45 1 2.7690 -3.8567 0.6532 46 1 2.1962 -3.8513 -1.0370 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219045305.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:07 Heat of formation + Delta-G solvation = 49.722685 kcal Electronic energy + Delta-G solvation = -28885.780467 eV Core-core repulsion = 24936.450171 eV Total energy + Delta-G solvation = -3949.330296 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.84872 -39.29295 -38.50282 -35.97572 -34.89747 -34.40539 -32.51142 -31.57766 -31.16315 -30.04526 -28.85829 -27.89337 -26.94517 -24.59015 -23.40505 -23.07782 -22.70446 -21.25836 -20.03474 -18.70058 -18.17450 -17.52630 -17.01608 -16.53696 -16.39246 -15.86572 -15.39362 -15.22576 -15.13732 -14.65794 -14.63597 -14.06642 -14.03794 -13.74649 -13.65284 -13.56781 -13.30952 -13.16160 -12.81954 -12.35472 -12.14210 -12.00468 -11.65263 -11.45851 -11.44262 -11.04506 -11.01110 -10.88683 -10.68578 -10.58619 -10.41304 -10.13396 -10.05800 -9.73588 -9.41468 -9.18460 -9.01039 -8.59169 -8.57176 -8.27238 -6.75316 -5.73709 -3.06349 0.75535 1.17774 2.53523 2.65436 2.76027 3.15520 3.41363 3.46449 3.49069 3.81676 3.96568 4.05647 4.49952 4.59657 4.73076 4.73696 4.80461 4.87075 5.00365 5.08931 5.11552 5.17956 5.20842 5.30877 5.34588 5.37846 5.39634 5.55760 5.65039 5.71055 5.80173 5.81216 5.84546 5.91918 6.09001 6.20160 6.20780 6.26091 6.31861 6.53459 6.72355 6.82954 7.15615 7.34285 7.41171 7.44927 7.54738 7.74255 7.83408 8.23805 8.33581 9.21016 9.82450 10.47315 11.39149 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010596 B = 0.002876 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2641.883585 B = 9734.352622 C =11749.903345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.008 4.008 3 Si 0.911 3.089 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.226 4.226 8 H 0.077 0.923 9 N -0.601 5.601 10 C 0.152 3.848 11 C 0.067 3.933 12 H 0.113 0.887 13 O -0.370 6.370 14 C 0.057 3.943 15 C 0.075 3.925 16 N -0.588 5.588 17 C 0.507 3.493 18 O -0.512 6.512 19 C -0.025 4.025 20 C -0.131 4.131 21 C -0.135 4.135 22 C 0.025 3.975 23 C -0.098 4.098 24 C -0.121 4.121 25 C -0.116 4.116 26 C -0.119 4.119 27 C -0.095 4.095 28 C 0.114 3.886 29 H 0.071 0.929 30 C 0.123 3.877 31 H 0.252 0.748 32 H 0.062 0.938 33 H 0.040 0.960 34 H 0.104 0.896 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.083 0.917 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.125 0.875 41 H 0.126 0.874 42 H 0.124 0.876 43 H 0.127 0.873 44 H 0.128 0.872 45 H 0.033 0.967 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.169 -18.972 -9.840 21.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.204 4.204 3 Si 0.741 3.259 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.354 4.354 8 H 0.095 0.905 9 N -0.329 5.329 10 C 0.027 3.973 11 C 0.008 3.992 12 H 0.131 0.869 13 O -0.287 6.287 14 C -0.021 4.021 15 C -0.049 4.049 16 N -0.322 5.322 17 C 0.294 3.706 18 O -0.387 6.387 19 C -0.064 4.064 20 C -0.131 4.131 21 C -0.135 4.135 22 C 0.025 3.975 23 C -0.116 4.116 24 C -0.139 4.139 25 C -0.134 4.134 26 C -0.137 4.137 27 C -0.113 4.113 28 C 0.010 3.990 29 H 0.089 0.911 30 C -0.003 4.003 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.058 0.942 34 H 0.122 0.878 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.101 0.899 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.143 0.857 41 H 0.144 0.856 42 H 0.142 0.858 43 H 0.145 0.855 44 H 0.146 0.854 45 H 0.050 0.950 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.604 -18.665 -9.551 20.976 hybrid contribution 0.465 1.001 -0.269 1.136 sum 1.069 -17.664 -9.820 20.239 Atomic orbital electron populations 1.69952 1.04946 1.25201 1.56633 1.24823 0.95643 0.97811 1.02125 0.86153 0.78712 0.83301 0.77698 1.21532 1.21598 1.20670 1.19002 0.91221 0.82586 1.42592 0.90548 1.44241 1.09678 1.00276 1.78738 1.21668 0.87082 0.89941 0.98641 1.22988 0.80119 0.96242 0.99816 0.86913 1.86846 1.28857 1.87107 1.25845 1.22248 0.97031 0.98426 0.84353 1.21718 0.81629 1.00480 1.01039 1.46668 1.05956 1.59107 1.20513 1.20302 0.86481 0.79798 0.83979 1.90727 1.16559 1.54800 1.76651 1.18730 0.93120 1.01761 0.92769 1.21144 0.95927 0.99149 0.96899 1.18933 0.94206 1.01567 0.98838 1.15892 0.92174 0.94072 0.95383 1.21230 0.96213 0.95226 0.98948 1.21071 0.96413 0.99796 0.96621 1.21262 0.99790 0.93671 0.98692 1.21107 0.96320 0.96742 0.99539 1.21306 0.95901 0.99158 0.94962 1.21569 0.96219 0.95593 0.85640 0.91134 1.21810 0.93195 0.84099 1.01182 0.93739 0.91935 0.94226 0.87784 0.91968 0.91431 0.89887 0.86478 0.86382 0.85653 0.85618 0.85843 0.85508 0.85423 0.94957 0.91983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.20 10.67 55.49 0.59 -26.60 16 2 C -0.01 -0.22 5.40 -17.43 -0.09 -0.31 16 3 Si 0.91 22.54 29.56 -169.99 -5.03 17.51 16 4 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.23 -6.52 10.21 -15.06 -0.15 -6.67 16 8 H 0.08 2.18 7.85 -52.48 -0.41 1.76 16 9 N -0.60 -15.90 3.39 -171.45 -0.58 -16.49 16 10 C 0.15 3.69 4.98 -3.23 -0.02 3.68 16 11 C 0.07 1.29 3.91 -26.28 -0.10 1.19 16 12 H 0.11 2.02 8.14 -51.93 -0.42 1.60 16 13 O -0.37 -6.30 10.25 -34.36 -0.35 -6.65 16 14 C 0.06 0.77 6.74 36.64 0.25 1.02 16 15 C 0.07 0.88 5.87 -5.39 -0.03 0.85 16 16 N -0.59 -9.39 3.09 -169.00 -0.52 -9.91 16 17 C 0.51 8.32 7.03 -10.98 -0.08 8.24 16 18 O -0.51 -10.59 13.05 5.56 0.07 -10.52 16 19 C -0.02 -0.29 4.76 -30.67 -0.15 -0.44 16 20 C -0.13 -1.88 12.57 -37.14 -0.47 -2.35 16 21 C -0.14 -1.99 13.23 -38.85 -0.51 -2.50 16 22 C 0.02 0.32 5.72 -107.01 -0.61 -0.29 16 23 C -0.10 -1.06 9.75 -39.20 -0.38 -1.45 16 24 C -0.12 -1.08 10.03 -39.64 -0.40 -1.47 16 25 C -0.12 -0.99 10.04 -39.50 -0.40 -1.39 16 26 C -0.12 -1.13 10.03 -39.64 -0.40 -1.53 16 27 C -0.10 -1.12 9.75 -39.19 -0.38 -1.50 16 28 C 0.11 2.13 3.34 -68.66 -0.23 1.90 16 29 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 30 C 0.12 2.83 6.06 -3.42 -0.02 2.81 16 31 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 32 H 0.06 1.68 7.34 -51.93 -0.38 1.30 16 33 H 0.04 1.05 6.09 -51.93 -0.32 0.73 16 34 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.06 0.99 6.73 -51.93 -0.35 0.64 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.76 6.33 -51.93 -0.33 0.43 16 38 H 0.12 0.96 8.08 -51.93 -0.42 0.54 16 39 H 0.12 1.12 7.12 -51.93 -0.37 0.75 16 40 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 41 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 42 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 43 H 0.13 0.92 8.06 -52.48 -0.42 0.49 16 44 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 45 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.06 1.56 5.19 -51.93 -0.27 1.29 16 LS Contribution 374.80 15.07 5.65 5.65 Total: -1.00 -35.69 374.80 -10.55 -46.25 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -6.21 Total: 0.98 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: -4.17 Total: -0.22 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: -0.51 Total: -53.00 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: -0.28 Total: -17.17 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.03 Total: 17.51 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.69 -10.55 -46.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219045305.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.968 kcal (2) G-P(sol) polarization free energy of solvation -35.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds