Wall clock time and date at job start Tue Mar 31 2020 23:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86807 * 119.99942 * 2 1 4 4 H 1.48499 * 109.46849 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46821 * 299.99601 * 3 2 1 6 6 H 1.48498 * 109.46991 * 59.99474 * 3 2 1 7 7 C 1.38657 * 119.99924 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99313 * 180.02562 * 7 2 1 9 9 O 1.34803 * 120.00411 * 0.02562 * 7 2 1 10 10 C 1.35710 * 117.00301 * 185.05440 * 9 7 2 11 11 C 1.39429 * 120.38673 * 354.51611 * 10 9 7 12 12 C 1.38215 * 118.45405 * 180.02562 * 11 10 9 13 13 C 1.39421 * 119.15027 * 0.02562 * 12 11 10 14 14 C 1.48292 * 119.65504 * 179.97438 * 13 12 11 15 15 C 1.39419 * 120.12341 * 359.97438 * 14 13 12 16 16 C 1.37982 * 119.87136 * 180.02562 * 15 14 13 17 17 C 1.38355 * 120.12355 * 359.74186 * 16 15 14 18 18 C 1.38310 * 120.26022 * 0.51286 * 17 16 15 19 19 C 1.50689 * 119.93941 * 179.76350 * 18 17 16 20 20 N 1.46899 * 109.47479 * 269.72352 * 19 18 17 21 21 C 1.47028 * 110.99470 * 46.31888 * 20 19 18 22 22 C 1.53100 * 109.25447 * 182.34938 * 21 20 19 23 23 O 1.43015 * 109.29607 * 303.22153 * 22 21 20 24 24 C 1.43009 * 113.73969 * 58.64603 * 23 22 21 25 25 C 1.47011 * 111.00345 * 170.00063 * 20 19 18 26 26 C 1.38027 * 120.12080 * 359.49125 * 18 17 16 27 27 N 1.32691 * 120.69893 * 0.25568 * 13 12 11 28 28 C 1.31659 * 121.68068 * 359.46946 * 27 13 12 29 29 H 0.96994 * 120.00125 * 0.02562 * 1 2 3 30 30 H 1.07993 * 120.76867 * 0.02562 * 11 10 9 31 31 H 1.07999 * 120.42422 * 179.97438 * 12 11 10 32 32 H 1.08002 * 120.06339 * 0.02562 * 15 14 13 33 33 H 1.07999 * 119.93389 * 180.02562 * 16 15 14 34 34 H 1.08000 * 119.86751 * 180.25598 * 17 16 15 35 35 H 1.09001 * 109.47119 * 149.72375 * 19 18 17 36 36 H 1.09000 * 109.47564 * 29.72564 * 19 18 17 37 37 H 1.08996 * 109.46759 * 62.43975 * 21 20 19 38 38 H 1.08997 * 109.54353 * 302.30868 * 21 20 19 39 39 H 1.09002 * 109.50506 * 183.26084 * 22 21 20 40 40 H 1.08999 * 109.50169 * 63.18049 * 22 21 20 41 41 H 1.09002 * 109.50797 * 61.26392 * 24 23 22 42 42 H 1.09002 * 109.50729 * 181.35387 * 24 23 22 43 43 H 1.08992 * 109.50610 * 57.67531 * 25 20 19 44 44 H 1.09007 * 109.50666 * 297.54545 * 25 20 19 45 45 H 1.08000 * 120.06129 * 180.23594 * 26 18 17 46 46 H 1.07993 * 119.60687 * 180.24821 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.7096 1.3464 0.0006 5 1 1.8909 2.3964 -1.2125 6 1 1.8907 2.3965 1.2124 7 6 2.0088 -1.2008 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3349 -2.3683 0.0005 10 6 2.0699 -3.5041 0.1076 11 6 3.4630 -3.4463 0.0969 12 6 4.1719 -4.6275 0.2079 13 6 3.4751 -5.8293 0.3255 14 6 4.2245 -7.1034 0.4448 15 6 5.6187 -7.0983 0.4386 16 6 6.3107 -8.2869 0.5493 17 6 5.6238 -9.4816 0.6716 18 6 4.2407 -9.4933 0.6731 19 6 3.4998 -10.7992 0.8014 20 7 3.2529 -11.3556 -0.5355 21 6 4.4668 -11.2969 -1.3630 22 6 4.1502 -11.8310 -2.7624 23 8 3.6308 -13.1592 -2.6550 24 6 2.4479 -13.2519 -1.8568 25 6 2.7473 -12.7332 -0.4478 26 6 3.5379 -8.3105 0.5629 27 7 2.1483 -5.8458 0.3264 28 6 1.4430 -4.7384 0.2277 29 1 -0.4850 0.8400 -0.0004 30 1 3.9760 -2.5005 0.0040 31 1 5.2519 -4.6197 0.2027 32 1 6.1559 -6.1658 0.3473 33 1 7.3907 -8.2840 0.5450 34 1 6.1697 -10.4090 0.7621 35 1 2.5485 -10.6292 1.3055 36 1 4.0984 -11.5010 1.3821 37 1 5.2465 -11.9077 -0.9080 38 1 4.8087 -10.2645 -1.4361 39 1 5.0606 -11.8435 -3.3618 40 1 3.4099 -11.1880 -3.2385 41 1 1.6577 -12.6502 -2.3058 42 1 2.1266 -14.2921 -1.8017 43 1 1.8344 -12.7486 0.1474 44 1 3.4993 -13.3677 0.0214 45 1 2.4579 -8.3204 0.5680 46 1 0.3643 -4.7904 0.2359 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241816310.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:04 Heat of formation + Delta-G solvation = -2.699982 kcal Electronic energy + Delta-G solvation = -28060.630348 eV Core-core repulsion = 24109.026835 eV Total energy + Delta-G solvation = -3951.603514 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.22832 -39.69470 -38.75547 -37.21861 -35.92435 -32.71339 -32.24157 -31.49672 -31.35569 -31.13795 -28.43236 -27.92902 -25.69629 -24.65452 -24.27249 -23.21776 -22.79161 -21.47171 -20.62048 -20.21994 -18.22494 -17.48021 -16.86413 -16.56326 -16.18137 -15.87694 -15.69358 -15.35291 -15.22432 -14.91973 -14.62778 -14.31312 -14.21633 -14.11978 -13.91624 -13.70619 -13.07935 -13.00347 -12.87756 -12.57038 -12.42723 -12.28037 -11.95704 -11.88521 -11.66506 -11.58561 -11.57031 -11.18545 -10.94002 -10.86947 -10.74624 -10.60076 -9.91922 -9.88265 -9.27897 -9.10064 -8.83990 -8.81822 -8.72109 -8.47960 -7.23342 -6.68237 -4.24121 1.06532 1.49773 1.99434 2.33011 3.00736 3.01861 3.07739 3.49756 3.64685 3.78158 4.00241 4.51570 4.61663 4.66446 4.68075 4.74099 4.86145 4.90304 4.92614 4.98150 5.01904 5.08415 5.17945 5.26361 5.29893 5.39750 5.41292 5.43489 5.50301 5.52298 5.64134 5.67267 5.72299 5.77325 5.86796 6.00360 6.10452 6.21049 6.45685 6.53227 6.57284 6.66309 6.73171 6.76641 6.88786 6.90577 6.92116 7.11671 7.13807 7.40349 7.74358 8.68348 8.76386 9.40171 10.47979 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020770 B = 0.002045 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.799032 B =13686.269124 C =14319.556696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.042 3.958 3 Si 0.945 3.055 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.393 4.393 8 H 0.096 0.904 9 O -0.158 6.158 10 C 0.108 3.892 11 C -0.203 4.203 12 C -0.099 4.099 13 C 0.036 3.964 14 C 0.000 4.000 15 C -0.120 4.120 16 C -0.119 4.119 17 C -0.129 4.129 18 C -0.091 4.091 19 C 0.099 3.901 20 N -0.530 5.530 21 C 0.016 3.984 22 C 0.062 3.938 23 O -0.389 6.389 24 C 0.064 3.936 25 C 0.017 3.983 26 C -0.077 4.077 27 N -0.429 5.429 28 C 0.035 3.965 29 H 0.274 0.726 30 H 0.138 0.862 31 H 0.121 0.879 32 H 0.123 0.877 33 H 0.119 0.881 34 H 0.112 0.888 35 H 0.087 0.913 36 H 0.041 0.959 37 H 0.039 0.961 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.096 0.904 43 H 0.087 0.913 44 H 0.041 0.959 45 H 0.134 0.866 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.742 -20.217 -0.387 22.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.164 4.164 3 Si 0.769 3.231 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.469 4.469 8 H 0.113 0.887 9 O -0.058 6.058 10 C 0.050 3.950 11 C -0.229 4.229 12 C -0.119 4.119 13 C -0.098 4.098 14 C -0.001 4.001 15 C -0.139 4.139 16 C -0.137 4.137 17 C -0.148 4.148 18 C -0.092 4.092 19 C -0.028 4.028 20 N -0.255 5.255 21 C -0.112 4.112 22 C -0.015 4.015 23 O -0.307 6.307 24 C -0.013 4.013 25 C -0.111 4.111 26 C -0.096 4.096 27 N -0.139 5.139 28 C -0.129 4.129 29 H 0.084 0.916 30 H 0.156 0.844 31 H 0.139 0.861 32 H 0.141 0.859 33 H 0.137 0.863 34 H 0.130 0.870 35 H 0.105 0.895 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.114 0.886 43 H 0.105 0.895 44 H 0.059 0.941 45 H 0.152 0.848 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 8.583 -20.634 -0.659 22.357 hybrid contribution 1.489 1.558 0.519 2.216 sum 10.072 -19.076 -0.140 21.572 Atomic orbital electron populations 1.70037 1.06087 1.28223 1.43880 1.25390 0.95933 0.99123 0.95984 0.85578 0.79162 0.79807 0.78519 1.18917 1.19861 1.19866 1.21467 0.92030 0.80567 1.52865 0.88712 1.83953 1.34386 1.11474 1.75976 1.20556 0.91014 0.89387 0.94037 1.21464 0.93897 0.99001 1.08562 1.21691 0.99823 0.92210 0.98148 1.19063 0.89406 0.91468 1.09858 1.18523 0.92093 0.91717 0.97787 1.21199 0.93309 0.98239 1.01160 1.20901 0.99414 0.92244 1.01160 1.20944 0.93544 0.97735 1.02558 1.19566 0.93340 0.94399 1.01877 1.21056 0.99810 0.92575 0.89373 1.62302 1.30667 1.19113 1.13406 1.22891 0.91342 1.02706 0.94247 1.22705 0.99425 0.83567 0.95771 1.87962 1.43270 1.28474 1.71019 1.22653 0.87734 1.01452 0.89506 1.22802 1.00884 0.88903 0.98489 1.21126 1.00713 0.90287 0.97463 1.67326 1.07177 1.29803 1.09563 1.21759 0.99714 0.85260 1.06193 0.91572 0.84448 0.86107 0.85941 0.86285 0.87010 0.89507 0.94064 0.94230 0.88617 0.88548 0.92096 0.92100 0.88555 0.89493 0.94072 0.84831 0.82949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.59 13.67 55.48 0.76 -22.83 16 2 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 3 Si 0.95 19.33 29.55 -169.99 -5.02 14.30 16 4 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 5 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 6 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 7 C -0.39 -10.34 9.50 30.89 0.29 -10.05 16 8 H 0.10 2.29 5.25 -52.48 -0.28 2.01 16 9 O -0.16 -4.25 9.76 0.25 0.00 -4.25 16 10 C 0.11 2.50 6.67 -38.87 -0.26 2.24 16 11 C -0.20 -4.22 9.25 -39.15 -0.36 -4.58 16 12 C -0.10 -1.79 9.45 -39.15 -0.37 -2.16 16 13 C 0.04 0.67 6.73 -82.92 -0.56 0.12 16 14 C 0.00 -0.01 5.88 -104.90 -0.62 -0.62 16 15 C -0.12 -1.60 9.42 -39.24 -0.37 -1.97 16 16 C -0.12 -1.34 10.03 -39.63 -0.40 -1.74 16 17 C -0.13 -1.42 7.87 -39.51 -0.31 -1.73 16 18 C -0.09 -1.11 4.13 -104.68 -0.43 -1.55 16 19 C 0.10 1.02 5.43 -4.98 -0.03 1.00 16 20 N -0.53 -5.56 4.87 -235.75 -1.15 -6.70 16 21 C 0.02 0.16 4.66 -3.70 -0.02 0.15 16 22 C 0.06 0.60 7.01 37.21 0.26 0.86 16 23 O -0.39 -4.16 10.83 -35.23 -0.38 -4.54 16 24 C 0.06 0.54 7.01 37.21 0.26 0.81 16 25 C 0.02 0.15 5.63 -3.71 -0.02 0.13 16 26 C -0.08 -1.14 9.22 -39.24 -0.36 -1.50 16 27 N -0.43 -8.67 9.42 -9.61 -0.09 -8.76 16 28 C 0.04 0.75 11.14 -17.36 -0.19 0.55 16 29 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.14 2.75 5.75 -52.49 -0.30 2.45 16 31 H 0.12 1.78 6.18 -52.49 -0.32 1.46 16 32 H 0.12 1.46 6.18 -52.49 -0.32 1.14 16 33 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 34 H 0.11 1.03 8.06 -52.49 -0.42 0.60 16 35 H 0.09 0.89 8.08 -51.93 -0.42 0.47 16 36 H 0.04 0.39 8.02 -51.93 -0.42 -0.03 16 37 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.10 1.06 5.93 -51.93 -0.31 0.76 16 39 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.13 2.11 7.53 -52.49 -0.40 1.72 16 46 H 0.15 3.03 8.06 -52.49 -0.42 2.61 16 LS Contribution 376.34 15.07 5.67 5.67 Total: -1.00 -29.82 376.34 -9.92 -39.73 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -6.13 Total: 6.41 kcal Atomic # 6 Polarization: -15.47 SS G_CDS: -3.58 Total: -19.04 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: -0.48 Total: -38.29 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: -0.38 Total: -8.79 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.02 Total: 14.30 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.82 -9.92 -39.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241816310.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.035 kcal (2) G-P(sol) polarization free energy of solvation -29.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds