Wall clock time and date at job start Tue Mar 31 2020 23:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86807 * 119.99942 * 2 1 4 4 H 1.48499 * 109.46849 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46821 * 299.99601 * 3 2 1 6 6 H 1.48498 * 109.46991 * 59.99474 * 3 2 1 7 7 C 1.38657 * 119.99924 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99313 * 180.02562 * 7 2 1 9 9 O 1.34803 * 120.00411 * 0.02562 * 7 2 1 10 10 C 1.35710 * 117.00301 * 185.05440 * 9 7 2 11 11 C 1.39429 * 120.38673 * 354.51611 * 10 9 7 12 12 C 1.38215 * 118.45405 * 180.02562 * 11 10 9 13 13 C 1.39421 * 119.15027 * 0.02562 * 12 11 10 14 14 C 1.48292 * 119.65504 * 179.97438 * 13 12 11 15 15 C 1.39419 * 120.12341 * 359.97438 * 14 13 12 16 16 C 1.37982 * 119.87136 * 180.02562 * 15 14 13 17 17 C 1.38355 * 120.12355 * 359.74186 * 16 15 14 18 18 C 1.38310 * 120.26022 * 0.51286 * 17 16 15 19 19 C 1.50689 * 119.93941 * 179.76350 * 18 17 16 20 20 N 1.46899 * 109.47479 * 269.72352 * 19 18 17 21 21 C 1.47028 * 110.99470 * 46.31888 * 20 19 18 22 22 C 1.53100 * 109.25447 * 182.34938 * 21 20 19 23 23 O 1.43015 * 109.29607 * 303.22153 * 22 21 20 24 24 C 1.43009 * 113.73969 * 58.64603 * 23 22 21 25 25 C 1.47011 * 111.00345 * 170.00063 * 20 19 18 26 26 C 1.38027 * 120.12080 * 359.49125 * 18 17 16 27 27 N 1.32691 * 120.69893 * 0.25568 * 13 12 11 28 28 C 1.31659 * 121.68068 * 359.46946 * 27 13 12 29 29 H 0.96994 * 120.00125 * 0.02562 * 1 2 3 30 30 H 1.07993 * 120.76867 * 0.02562 * 11 10 9 31 31 H 1.07999 * 120.42422 * 179.97438 * 12 11 10 32 32 H 1.08002 * 120.06339 * 0.02562 * 15 14 13 33 33 H 1.07999 * 119.93389 * 180.02562 * 16 15 14 34 34 H 1.08000 * 119.86751 * 180.25598 * 17 16 15 35 35 H 1.09001 * 109.47119 * 149.72375 * 19 18 17 36 36 H 1.09000 * 109.47564 * 29.72564 * 19 18 17 37 37 H 1.08996 * 109.46759 * 62.43975 * 21 20 19 38 38 H 1.08997 * 109.54353 * 302.30868 * 21 20 19 39 39 H 1.09002 * 109.50506 * 183.26084 * 22 21 20 40 40 H 1.08999 * 109.50169 * 63.18049 * 22 21 20 41 41 H 1.09002 * 109.50797 * 61.26392 * 24 23 22 42 42 H 1.09002 * 109.50729 * 181.35387 * 24 23 22 43 43 H 1.08992 * 109.50610 * 57.67531 * 25 20 19 44 44 H 1.09007 * 109.50666 * 297.54545 * 25 20 19 45 45 H 1.08000 * 120.06129 * 180.23594 * 26 18 17 46 46 H 1.07993 * 119.60687 * 180.24821 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.7096 1.3464 0.0006 5 1 1.8909 2.3964 -1.2125 6 1 1.8907 2.3965 1.2124 7 6 2.0088 -1.2008 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3349 -2.3683 0.0005 10 6 2.0699 -3.5041 0.1076 11 6 3.4630 -3.4463 0.0969 12 6 4.1719 -4.6275 0.2079 13 6 3.4751 -5.8293 0.3255 14 6 4.2245 -7.1034 0.4448 15 6 5.6187 -7.0983 0.4386 16 6 6.3107 -8.2869 0.5493 17 6 5.6238 -9.4816 0.6716 18 6 4.2407 -9.4933 0.6731 19 6 3.4998 -10.7992 0.8014 20 7 3.2529 -11.3556 -0.5355 21 6 4.4668 -11.2969 -1.3630 22 6 4.1502 -11.8310 -2.7624 23 8 3.6308 -13.1592 -2.6550 24 6 2.4479 -13.2519 -1.8568 25 6 2.7473 -12.7332 -0.4478 26 6 3.5379 -8.3105 0.5629 27 7 2.1483 -5.8458 0.3264 28 6 1.4430 -4.7384 0.2277 29 1 -0.4850 0.8400 -0.0004 30 1 3.9760 -2.5005 0.0040 31 1 5.2519 -4.6197 0.2027 32 1 6.1559 -6.1658 0.3473 33 1 7.3907 -8.2840 0.5450 34 1 6.1697 -10.4090 0.7621 35 1 2.5485 -10.6292 1.3055 36 1 4.0984 -11.5010 1.3821 37 1 5.2465 -11.9077 -0.9080 38 1 4.8087 -10.2645 -1.4361 39 1 5.0606 -11.8435 -3.3618 40 1 3.4099 -11.1880 -3.2385 41 1 1.6577 -12.6502 -2.3058 42 1 2.1266 -14.2921 -1.8017 43 1 1.8344 -12.7486 0.1474 44 1 3.4993 -13.3677 0.0214 45 1 2.4579 -8.3204 0.5680 46 1 0.3643 -4.7904 0.2359 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241816310.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:03 Heat of formation + Delta-G solvation = -21.493658 kcal Electronic energy + Delta-G solvation = -28061.445303 eV Core-core repulsion = 24109.026835 eV Total energy + Delta-G solvation = -3952.418468 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.50335 -40.85692 -39.86393 -38.81452 -36.78928 -34.48636 -33.50654 -32.93915 -32.36942 -32.03344 -29.84140 -28.84586 -27.48979 -25.58005 -25.07136 -24.60138 -24.23638 -22.65574 -21.65576 -21.16986 -19.99703 -19.10367 -17.85559 -17.51497 -17.31658 -17.03944 -16.90086 -16.30643 -16.21957 -15.97458 -15.94269 -15.91015 -15.30847 -15.23589 -15.08276 -14.96513 -14.46274 -14.36765 -14.18385 -13.87443 -13.62029 -13.41550 -13.12948 -13.06686 -12.99947 -12.75886 -12.41976 -12.34039 -12.11875 -12.00812 -11.79841 -11.71123 -11.52291 -11.00403 -10.68557 -10.63556 -10.44280 -10.14969 -9.75595 -9.29988 -8.78262 -8.54859 -6.22119 -0.19517 0.34857 0.48402 0.93746 1.35510 1.44289 1.53923 2.12320 2.56782 2.82895 2.93422 3.05324 3.16724 3.29183 3.49474 3.62058 3.82028 3.96140 3.97742 4.01421 4.10769 4.17549 4.19423 4.25821 4.27001 4.29920 4.42405 4.45281 4.56683 4.62890 4.67804 4.73727 4.76835 4.82985 4.85990 4.90621 4.93394 5.01374 5.09591 5.15829 5.27678 5.36932 5.53015 5.60951 5.73381 5.81265 5.90413 5.94732 5.98141 6.11359 6.17117 6.87708 7.06238 7.60876 8.66773 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020770 B = 0.002045 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.799032 B =13686.269124 C =14319.556696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.018 4.018 3 Si 1.021 2.979 4 H -0.248 1.248 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.417 4.417 8 H 0.108 0.892 9 O -0.210 6.210 10 C 0.077 3.923 11 C -0.197 4.197 12 C -0.099 4.099 13 C 0.057 3.943 14 C -0.039 4.039 15 C -0.115 4.115 16 C -0.114 4.114 17 C -0.111 4.111 18 C -0.091 4.091 19 C 0.101 3.899 20 N -0.547 5.547 21 C 0.021 3.979 22 C 0.061 3.939 23 O -0.403 6.403 24 C 0.060 3.940 25 C 0.019 3.981 26 C -0.088 4.088 27 N -0.443 5.443 28 C 0.024 3.976 29 H 0.276 0.724 30 H 0.144 0.856 31 H 0.165 0.835 32 H 0.140 0.860 33 H 0.155 0.845 34 H 0.141 0.859 35 H 0.082 0.918 36 H 0.059 0.941 37 H 0.048 0.952 38 H 0.085 0.915 39 H 0.113 0.887 40 H 0.049 0.951 41 H 0.053 0.947 42 H 0.118 0.882 43 H 0.097 0.903 44 H 0.047 0.953 45 H 0.112 0.888 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.955 -22.725 -0.011 26.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.217 4.217 3 Si 0.840 3.160 4 H -0.171 1.171 5 H -0.193 1.193 6 H -0.194 1.194 7 C -0.493 4.493 8 H 0.125 0.875 9 O -0.114 6.114 10 C 0.023 3.977 11 C -0.223 4.223 12 C -0.118 4.118 13 C -0.079 4.079 14 C -0.039 4.039 15 C -0.134 4.134 16 C -0.131 4.131 17 C -0.130 4.130 18 C -0.091 4.091 19 C -0.026 4.026 20 N -0.273 5.273 21 C -0.107 4.107 22 C -0.016 4.016 23 O -0.322 6.322 24 C -0.017 4.017 25 C -0.108 4.108 26 C -0.107 4.107 27 N -0.152 5.152 28 C -0.137 4.137 29 H 0.085 0.915 30 H 0.162 0.838 31 H 0.182 0.818 32 H 0.157 0.843 33 H 0.173 0.827 34 H 0.158 0.842 35 H 0.101 0.899 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.103 0.897 39 H 0.131 0.869 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.136 0.864 43 H 0.115 0.885 44 H 0.065 0.935 45 H 0.131 0.869 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 12.798 -23.198 -0.280 26.496 hybrid contribution 0.409 1.747 0.431 1.845 sum 13.207 -21.451 0.150 25.191 Atomic orbital electron populations 1.70176 1.08115 1.29201 1.47295 1.26655 0.96861 1.02851 0.95333 0.84494 0.78429 0.74509 0.78580 1.17061 1.19342 1.19391 1.21947 0.92810 0.80996 1.53557 0.87456 1.83945 1.35650 1.12365 1.79439 1.20934 0.92368 0.89102 0.95293 1.21703 0.93018 1.00421 1.07198 1.22086 1.01913 0.90737 0.97039 1.19830 0.89073 0.93427 1.05530 1.18540 0.93335 0.90443 1.01632 1.21437 0.91985 1.00044 0.99922 1.21302 1.01178 0.91232 0.99406 1.21331 0.92957 0.99063 0.99655 1.19724 0.94161 0.94098 1.01161 1.21034 0.99813 0.92054 0.89664 1.62283 1.31122 1.20412 1.13481 1.22819 0.91382 1.02100 0.94371 1.22763 0.99806 0.83146 0.95878 1.87944 1.43950 1.28825 1.71501 1.22808 0.86941 1.02707 0.89212 1.22837 1.01441 0.87912 0.98646 1.21068 0.99977 0.91320 0.98344 1.67440 1.08319 1.29049 1.10398 1.21867 1.00171 0.85328 1.06327 0.91479 0.83809 0.81781 0.84259 0.82750 0.84164 0.89924 0.92312 0.93403 0.89670 0.86942 0.93269 0.92848 0.86402 0.88460 0.93461 0.86943 0.82927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.78 13.67 21.61 0.30 -53.48 16 2 C -0.02 -0.97 5.49 84.83 0.47 -0.50 16 3 Si 1.02 40.57 29.55 68.60 2.03 42.60 16 4 H -0.25 -8.94 7.11 99.48 0.71 -8.24 16 5 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 6 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 7 C -0.42 -23.02 9.50 67.92 0.64 -22.37 16 8 H 0.11 5.32 5.25 -2.91 -0.02 5.31 16 9 O -0.21 -12.10 9.76 -22.02 -0.21 -12.32 16 10 C 0.08 3.76 6.67 22.73 0.15 3.92 16 11 C -0.20 -8.20 9.25 22.55 0.21 -7.99 16 12 C -0.10 -3.40 9.45 22.55 0.21 -3.19 16 13 C 0.06 2.10 6.73 41.98 0.28 2.38 16 14 C -0.04 -1.15 5.88 -20.04 -0.12 -1.27 16 15 C -0.11 -2.59 9.42 22.49 0.21 -2.38 16 16 C -0.11 -1.96 10.03 22.24 0.22 -1.74 16 17 C -0.11 -1.93 7.87 22.31 0.18 -1.76 16 18 C -0.09 -1.97 4.13 -19.90 -0.08 -2.05 16 19 C 0.10 1.85 5.43 85.55 0.46 2.31 16 20 N -0.55 -10.33 4.87 -899.78 -4.38 -14.71 16 21 C 0.02 0.37 4.66 86.31 0.40 0.78 16 22 C 0.06 1.07 7.01 72.02 0.50 1.57 16 23 O -0.40 -7.85 10.83 -148.98 -1.61 -9.47 16 24 C 0.06 0.92 7.01 72.02 0.50 1.42 16 25 C 0.02 0.29 5.63 86.32 0.49 0.77 16 26 C -0.09 -2.49 9.22 22.49 0.21 -2.28 16 27 N -0.44 -18.29 9.42 -184.32 -1.74 -20.03 16 28 C 0.02 1.09 11.14 84.89 0.95 2.04 16 29 H 0.28 14.85 8.31 -92.71 -0.77 14.08 16 30 H 0.14 5.73 5.75 -2.91 -0.02 5.71 16 31 H 0.16 4.19 6.18 -2.91 -0.02 4.17 16 32 H 0.14 2.62 6.18 -2.91 -0.02 2.60 16 33 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 34 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 35 H 0.08 1.57 8.08 -2.39 -0.02 1.55 16 36 H 0.06 0.88 8.02 -2.39 -0.02 0.86 16 37 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.09 1.66 5.93 -2.39 -0.01 1.64 16 39 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 45 H 0.11 3.62 7.53 -2.91 -0.02 3.60 16 46 H 0.15 6.62 8.06 -2.91 -0.02 6.60 16 Total: -1.00 -69.84 376.34 1.27 -68.57 By element: Atomic # 1 Polarization: 28.18 SS G_CDS: 1.00 Total: 29.18 kcal Atomic # 6 Polarization: -36.23 SS G_CDS: 5.89 Total: -30.34 kcal Atomic # 7 Polarization: -82.40 SS G_CDS: -5.82 Total: -88.22 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -1.83 Total: -21.78 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 2.03 Total: 42.60 kcal Total: -69.84 1.27 -68.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241816310.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.072 kcal (2) G-P(sol) polarization free energy of solvation -69.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds