Wall clock time and date at job start Tue Mar 31 2020 23:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99627 * 2 1 4 4 H 1.48498 * 109.47101 * 269.99564 * 3 2 1 5 5 H 1.48498 * 109.47098 * 29.99817 * 3 2 1 6 6 H 1.48506 * 109.47054 * 149.99853 * 3 2 1 7 7 C 1.38812 * 120.00256 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99916 * 359.97438 * 7 2 1 9 9 N 1.36933 * 119.99922 * 180.02562 * 7 2 1 10 10 C 1.45891 * 120.00012 * 179.97438 * 9 7 2 11 11 H 1.10994 * 107.06606 * 327.66410 * 10 9 7 12 12 C 1.52516 * 112.49244 * 209.75600 * 10 9 7 13 13 C 1.51663 * 112.20595 * 343.05257 * 12 10 9 14 14 C 1.52547 * 111.90717 * 296.06509 * 13 12 10 15 15 C 1.52429 * 111.03993 * 301.82031 * 14 13 12 16 16 C 1.52556 * 112.60899 * 80.38964 * 15 14 13 17 17 N 1.45751 * 113.84370 * 22.52678 * 16 15 14 18 18 C 1.35161 * 120.27280 * 75.61964 * 17 16 15 19 19 O 1.21275 * 120.00362 * 179.97438 * 18 17 16 20 20 C 1.50706 * 119.99870 * 359.97438 * 18 17 16 21 21 C 1.53005 * 109.46962 * 180.02562 * 20 18 17 22 22 F 1.39902 * 109.46907 * 299.99971 * 21 20 18 23 23 F 1.39899 * 109.47003 * 59.99757 * 21 20 18 24 24 C 1.53002 * 109.46864 * 180.02562 * 21 20 18 25 25 F 1.39901 * 109.46581 * 180.02562 * 24 21 20 26 26 F 1.39904 * 109.46820 * 299.99853 * 24 21 20 27 27 C 1.47094 * 119.86657 * 252.03814 * 17 16 15 28 28 H 0.96996 * 120.00473 * 0.02562 * 1 2 3 29 29 H 0.96998 * 119.99884 * 359.97438 * 9 7 2 30 30 H 1.10184 * 108.57014 * 102.88755 * 12 10 9 31 31 H 1.09006 * 110.39290 * 219.68037 * 12 10 9 32 32 H 1.09120 * 110.46111 * 58.98538 * 13 12 10 33 33 H 1.10017 * 108.63896 * 176.32849 * 13 12 10 34 34 H 1.10610 * 107.69620 * 183.75298 * 14 13 12 35 35 H 1.08055 * 111.33065 * 67.21047 * 14 13 12 36 36 H 1.09806 * 109.33313 * 318.79938 * 15 14 13 37 37 H 1.09814 * 109.12465 * 201.77177 * 15 14 13 38 38 H 1.10031 * 108.48840 * 142.81564 * 16 15 14 39 39 H 1.09260 * 109.90867 * 259.23718 * 16 15 14 40 40 H 1.08995 * 109.47067 * 300.00374 * 20 18 17 41 41 H 1.09001 * 109.47086 * 60.00183 * 20 18 17 42 42 H 1.09001 * 109.47338 * 59.99862 * 24 21 20 43 43 H 1.09558 * 109.03435 * 198.03350 * 27 17 16 44 44 H 1.09566 * 109.03708 * 315.97411 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 1.4704 -2.1374 0.0014 9 7 3.3797 -1.2020 0.0011 10 6 4.1092 -2.4654 0.0022 11 1 3.4955 -3.1955 0.5700 12 6 5.4601 -2.3585 0.7020 13 6 5.9095 -0.9191 0.8638 14 6 6.1462 -0.2420 -0.4826 15 6 7.1915 -0.9949 -1.2975 16 6 6.6150 -2.2180 -2.0039 17 7 5.1733 -2.1553 -2.2084 18 6 4.6561 -1.3657 -3.1758 19 8 3.4557 -1.3175 -3.3421 20 6 5.5710 -0.5450 -4.0479 21 6 4.7376 0.2528 -5.0529 22 9 3.9997 -0.6285 -5.8504 23 9 3.8641 1.1016 -4.3646 24 6 5.6666 1.0855 -5.9387 25 9 4.9044 1.8154 -6.8571 26 9 6.4049 1.9666 -5.1414 27 6 4.2824 -3.0133 -1.4123 28 1 -0.4851 0.8400 -0.0004 29 1 3.8646 -0.3620 0.0007 30 1 5.3736 -2.8111 1.7029 31 1 6.2144 -2.9302 0.1612 32 1 5.1772 -0.3535 1.4422 33 1 6.8523 -0.9066 1.4307 34 1 6.5344 0.7745 -0.2841 35 1 5.2219 -0.1187 -1.0284 36 1 8.0091 -1.3114 -0.6364 37 1 7.6218 -0.3160 -2.0457 38 1 7.0949 -2.3101 -2.9897 39 1 6.8657 -3.1229 -1.4452 40 1 6.1457 0.1418 -3.4266 41 1 6.2519 -1.2064 -4.5838 42 1 6.3468 0.4238 -6.4749 43 1 3.3069 -3.0723 -1.9073 44 1 4.7051 -4.0232 -1.3674 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264122222.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:26 Heat of formation + Delta-G solvation = -209.038452 kcal Electronic energy + Delta-G solvation = -33522.837561 eV Core-core repulsion = 28589.660575 eV Total energy + Delta-G solvation = -4933.176986 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.151 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.92585 -48.64790 -47.58057 -46.98867 -40.13489 -37.61761 -34.98122 -33.79680 -32.89461 -31.97594 -29.82983 -28.46593 -27.55922 -26.49465 -23.76607 -22.95809 -22.15663 -20.70359 -19.80035 -18.83690 -18.60939 -18.15872 -17.73125 -17.57352 -16.84616 -16.64334 -16.15372 -15.74907 -15.44041 -15.02547 -14.59975 -14.54062 -14.32378 -14.17546 -14.01662 -13.85018 -13.71137 -13.45451 -13.37885 -13.33825 -13.04452 -12.95207 -12.47333 -12.24940 -12.21041 -11.92470 -11.85647 -11.63567 -11.28992 -11.03447 -10.94026 -10.87784 -10.76328 -10.45588 -10.16064 -10.03180 -9.79517 -9.44232 -9.39528 -9.00095 -8.30128 -7.07725 -5.63313 -2.96824 2.43007 2.85649 3.13385 3.42297 3.44792 3.50041 3.54260 3.57658 3.74268 3.81511 4.43173 4.48123 4.57235 4.71249 4.72516 4.92213 4.98476 5.02321 5.14698 5.20194 5.29123 5.38338 5.44885 5.60077 5.64944 5.70813 5.78122 5.86214 6.00812 6.10662 6.16764 6.18669 6.35304 6.48525 6.60086 6.67657 6.76597 6.95407 7.62873 8.13268 8.47749 8.56374 9.35304 10.08220 10.25611 11.55663 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.010875 B = 0.005898 C = 0.004800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2574.190480 B = 4746.451446 C = 5832.005431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.012 3.988 3 Si 0.870 3.130 4 H -0.279 1.279 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.234 4.234 8 H 0.089 0.911 9 N -0.733 5.733 10 C 0.168 3.832 11 H 0.059 0.941 12 C -0.121 4.121 13 C -0.110 4.110 14 C -0.125 4.125 15 C -0.134 4.134 16 C 0.110 3.890 17 N -0.594 5.594 18 C 0.510 3.490 19 O -0.485 6.485 20 C -0.196 4.196 21 C 0.269 3.731 22 F -0.168 7.168 23 F -0.163 7.163 24 C 0.235 3.765 25 F -0.182 7.182 26 F -0.181 7.181 27 C 0.093 3.907 28 H 0.257 0.743 29 H 0.364 0.636 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.048 0.952 34 H 0.049 0.951 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.084 0.916 40 H 0.129 0.871 41 H 0.125 0.875 42 H 0.142 0.858 43 H 0.094 0.906 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.888 -3.909 -8.857 23.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.184 4.184 3 Si 0.701 3.299 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.206 1.206 7 C -0.364 4.364 8 H 0.106 0.894 9 N -0.377 5.377 10 C 0.056 3.944 11 H 0.076 0.924 12 C -0.159 4.159 13 C -0.148 4.148 14 C -0.163 4.163 15 C -0.172 4.172 16 C -0.015 4.015 17 N -0.328 5.328 18 C 0.295 3.705 19 O -0.356 6.356 20 C -0.236 4.236 21 C 0.231 3.769 22 F -0.149 7.149 23 F -0.143 7.143 24 C 0.180 3.820 25 F -0.163 7.163 26 F -0.162 7.162 27 C -0.032 4.032 28 H 0.067 0.933 29 H 0.199 0.801 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.103 0.897 40 H 0.147 0.853 41 H 0.143 0.857 42 H 0.159 0.841 43 H 0.112 0.888 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 20.903 -3.888 -8.912 23.053 hybrid contribution 0.587 1.488 -0.039 1.600 sum 21.489 -2.400 -8.951 23.403 Atomic orbital electron populations 1.69679 1.05026 1.25509 1.57934 1.24543 0.95044 0.96797 1.02010 0.86777 0.79156 0.85858 0.78117 1.20584 1.21900 1.20592 1.18986 0.80484 0.94508 1.42380 0.89361 1.42739 1.03835 1.01866 1.89243 1.20397 0.91539 0.90216 0.92224 0.92356 1.21678 0.97515 0.96292 1.00451 1.21163 1.00591 0.96677 0.96339 1.21482 0.99875 0.98071 0.96899 1.21968 0.98512 0.97248 0.99493 1.21408 0.81005 0.98964 1.00073 1.47578 1.06405 1.43583 1.35240 1.19711 0.88668 0.80863 0.81271 1.90926 1.14183 1.62496 1.68034 1.22938 1.00132 1.01565 0.98982 1.21573 0.85279 0.83503 0.86593 1.93118 1.78754 1.68838 1.74182 1.93207 1.70991 1.70437 1.79692 1.22864 0.88483 0.86561 0.84063 1.93078 1.77112 1.79586 1.66545 1.93061 1.76979 1.71391 1.74806 1.22772 0.95020 0.90581 0.94811 0.93267 0.80057 0.92843 0.92053 0.91259 0.93278 0.93231 0.90366 0.90925 0.92321 0.92427 0.89744 0.85347 0.85717 0.84074 0.88802 0.92470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -30.82 13.97 55.49 0.78 -30.05 16 2 C 0.01 0.36 5.50 -17.43 -0.10 0.26 16 3 Si 0.87 23.69 27.74 -169.99 -4.71 18.98 16 4 H -0.28 -7.88 7.11 56.52 0.40 -7.48 16 5 H -0.29 -8.00 7.11 56.52 0.40 -7.60 16 6 H -0.28 -6.99 6.52 56.52 0.37 -6.63 16 7 C -0.23 -6.76 10.35 -15.06 -0.16 -6.92 16 8 H 0.09 2.73 8.05 -52.49 -0.42 2.30 16 9 N -0.73 -17.22 4.36 -53.49 -0.23 -17.45 16 10 C 0.17 3.05 2.63 -68.68 -0.18 2.87 16 11 H 0.06 1.11 8.11 -50.78 -0.41 0.70 16 12 C -0.12 -1.69 5.03 -27.66 -0.14 -1.83 16 13 C -0.11 -1.60 4.74 -27.64 -0.13 -1.73 16 14 C -0.13 -1.77 4.73 -27.26 -0.13 -1.90 16 15 C -0.13 -1.28 4.78 -27.25 -0.13 -1.41 16 16 C 0.11 1.04 4.48 -4.67 -0.02 1.02 16 17 N -0.59 -8.54 1.72 -173.10 -0.30 -8.84 16 18 C 0.51 8.64 6.33 -10.81 -0.07 8.57 16 19 O -0.48 -11.15 14.22 5.56 0.08 -11.07 16 20 C -0.20 -2.32 3.86 -27.88 -0.11 -2.43 16 21 C 0.27 3.85 1.40 -26.73 -0.04 3.81 16 22 F -0.17 -2.67 16.12 2.25 0.04 -2.63 16 23 F -0.16 -3.24 16.11 2.25 0.04 -3.20 16 24 C 0.24 2.40 4.83 37.16 0.18 2.58 16 25 F -0.18 -2.32 17.30 2.25 0.04 -2.28 16 26 F -0.18 -1.99 16.80 2.25 0.04 -1.95 16 27 C 0.09 1.52 5.38 -3.89 -0.02 1.50 16 28 H 0.26 8.17 8.31 -40.82 -0.34 7.83 16 29 H 0.36 8.54 1.79 -40.82 -0.07 8.46 16 30 H 0.05 0.72 8.24 -51.25 -0.42 0.29 16 31 H 0.06 0.68 4.93 -51.93 -0.26 0.43 16 32 H 0.07 1.23 7.25 -51.86 -0.38 0.86 16 33 H 0.05 0.59 8.23 -51.35 -0.42 0.17 16 34 H 0.05 0.67 8.27 -51.01 -0.42 0.25 16 35 H 0.08 1.42 4.29 -52.46 -0.22 1.20 16 36 H 0.07 0.57 8.10 -51.47 -0.42 0.15 16 37 H 0.06 0.46 7.28 -51.47 -0.37 0.09 16 38 H 0.06 0.39 7.12 -51.34 -0.37 0.02 16 39 H 0.08 0.68 6.35 -51.78 -0.33 0.35 16 40 H 0.13 1.35 6.19 -51.93 -0.32 1.03 16 41 H 0.12 0.85 7.48 -51.93 -0.39 0.46 16 42 H 0.14 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.09 1.93 7.08 -51.61 -0.37 1.56 16 44 H 0.06 0.73 8.14 -51.61 -0.42 0.31 16 LS Contribution 346.43 15.07 5.22 5.22 Total: -1.00 -38.24 346.43 -5.66 -43.90 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -5.60 Total: 5.00 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: -1.04 Total: 4.38 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: 0.24 Total: -56.34 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.08 Total: -11.07 kcal Atomic # 9 Polarization: -10.21 SS G_CDS: 0.15 Total: -10.06 kcal Atomic # 14 Polarization: 23.69 SS G_CDS: -4.71 Total: 18.98 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -38.24 -5.66 -43.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264122222.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.141 kcal (2) G-P(sol) polarization free energy of solvation -38.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds