Wall clock time and date at job start Tue Mar 31 2020 23:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99627 * 2 1 4 4 H 1.48498 * 109.47101 * 269.99564 * 3 2 1 5 5 H 1.48498 * 109.47098 * 29.99817 * 3 2 1 6 6 H 1.48506 * 109.47054 * 149.99853 * 3 2 1 7 7 C 1.38812 * 120.00256 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99916 * 359.97438 * 7 2 1 9 9 N 1.36933 * 119.99922 * 180.02562 * 7 2 1 10 10 C 1.45891 * 120.00012 * 179.97438 * 9 7 2 11 11 H 1.10994 * 107.06606 * 327.66410 * 10 9 7 12 12 C 1.52516 * 112.49244 * 209.75600 * 10 9 7 13 13 C 1.51663 * 112.20595 * 343.05257 * 12 10 9 14 14 C 1.52547 * 111.90717 * 296.06509 * 13 12 10 15 15 C 1.52429 * 111.03993 * 301.82031 * 14 13 12 16 16 C 1.52556 * 112.60899 * 80.38964 * 15 14 13 17 17 N 1.45751 * 113.84370 * 22.52678 * 16 15 14 18 18 C 1.35161 * 120.27280 * 75.61964 * 17 16 15 19 19 O 1.21275 * 120.00362 * 179.97438 * 18 17 16 20 20 C 1.50706 * 119.99870 * 359.97438 * 18 17 16 21 21 C 1.53005 * 109.46962 * 180.02562 * 20 18 17 22 22 F 1.39902 * 109.46907 * 299.99971 * 21 20 18 23 23 F 1.39899 * 109.47003 * 59.99757 * 21 20 18 24 24 C 1.53002 * 109.46864 * 180.02562 * 21 20 18 25 25 F 1.39901 * 109.46581 * 180.02562 * 24 21 20 26 26 F 1.39904 * 109.46820 * 299.99853 * 24 21 20 27 27 C 1.47094 * 119.86657 * 252.03814 * 17 16 15 28 28 H 0.96996 * 120.00473 * 0.02562 * 1 2 3 29 29 H 0.96998 * 119.99884 * 359.97438 * 9 7 2 30 30 H 1.10184 * 108.57014 * 102.88755 * 12 10 9 31 31 H 1.09006 * 110.39290 * 219.68037 * 12 10 9 32 32 H 1.09120 * 110.46111 * 58.98538 * 13 12 10 33 33 H 1.10017 * 108.63896 * 176.32849 * 13 12 10 34 34 H 1.10610 * 107.69620 * 183.75298 * 14 13 12 35 35 H 1.08055 * 111.33065 * 67.21047 * 14 13 12 36 36 H 1.09806 * 109.33313 * 318.79938 * 15 14 13 37 37 H 1.09814 * 109.12465 * 201.77177 * 15 14 13 38 38 H 1.10031 * 108.48840 * 142.81564 * 16 15 14 39 39 H 1.09260 * 109.90867 * 259.23718 * 16 15 14 40 40 H 1.08995 * 109.47067 * 300.00374 * 20 18 17 41 41 H 1.09001 * 109.47086 * 60.00183 * 20 18 17 42 42 H 1.09001 * 109.47338 * 59.99862 * 24 21 20 43 43 H 1.09558 * 109.03435 * 198.03350 * 27 17 16 44 44 H 1.09566 * 109.03708 * 315.97411 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 1.4704 -2.1374 0.0014 9 7 3.3797 -1.2020 0.0011 10 6 4.1092 -2.4654 0.0022 11 1 3.4955 -3.1955 0.5700 12 6 5.4601 -2.3585 0.7020 13 6 5.9095 -0.9191 0.8638 14 6 6.1462 -0.2420 -0.4826 15 6 7.1915 -0.9949 -1.2975 16 6 6.6150 -2.2180 -2.0039 17 7 5.1733 -2.1553 -2.2084 18 6 4.6561 -1.3657 -3.1758 19 8 3.4557 -1.3175 -3.3421 20 6 5.5710 -0.5450 -4.0479 21 6 4.7376 0.2528 -5.0529 22 9 3.9997 -0.6285 -5.8504 23 9 3.8641 1.1016 -4.3646 24 6 5.6666 1.0855 -5.9387 25 9 4.9044 1.8154 -6.8571 26 9 6.4049 1.9666 -5.1414 27 6 4.2824 -3.0133 -1.4123 28 1 -0.4851 0.8400 -0.0004 29 1 3.8646 -0.3620 0.0007 30 1 5.3736 -2.8111 1.7029 31 1 6.2144 -2.9302 0.1612 32 1 5.1772 -0.3535 1.4422 33 1 6.8523 -0.9066 1.4307 34 1 6.5344 0.7745 -0.2841 35 1 5.2219 -0.1187 -1.0284 36 1 8.0091 -1.3114 -0.6364 37 1 7.6218 -0.3160 -2.0457 38 1 7.0949 -2.3101 -2.9897 39 1 6.8657 -3.1229 -1.4452 40 1 6.1457 0.1418 -3.4266 41 1 6.2519 -1.2064 -4.5838 42 1 6.3468 0.4238 -6.4749 43 1 3.3069 -3.0723 -1.9073 44 1 4.7051 -4.0232 -1.3674 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264122222.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:25 Heat of formation + Delta-G solvation = -236.733807 kcal Electronic energy + Delta-G solvation = -33524.038522 eV Core-core repulsion = 28589.660575 eV Total energy + Delta-G solvation = -4934.377947 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.151 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.89116 -49.65898 -48.54845 -48.10268 -41.31582 -38.94627 -36.46077 -34.99868 -34.29996 -33.54766 -31.63392 -29.48762 -28.56855 -27.58610 -25.59145 -24.27917 -23.13910 -21.85374 -21.08299 -20.14971 -19.67760 -19.53095 -19.10416 -18.60210 -17.81332 -17.74387 -17.21885 -17.01111 -16.69251 -16.39684 -16.09045 -15.77043 -15.56329 -15.49205 -15.17541 -15.05330 -14.78382 -14.70039 -14.61532 -14.50673 -14.39328 -14.04523 -13.91791 -13.59090 -13.30546 -13.19789 -13.08658 -12.99140 -12.69520 -12.58149 -12.39318 -12.23425 -11.96082 -11.86283 -11.82774 -11.50912 -11.13860 -11.11212 -11.00517 -10.60887 -9.75909 -9.02605 -8.04424 -5.30669 1.16815 1.28273 1.31329 1.52832 1.69053 2.09915 2.42087 2.54068 2.75966 2.87537 2.96576 3.29039 3.55284 3.68130 3.71847 3.75254 3.94814 3.98883 4.08911 4.14340 4.24042 4.29146 4.33056 4.42378 4.54239 4.58049 4.79772 4.86728 4.94449 5.00117 5.09139 5.13446 5.20317 5.25772 5.46430 5.51028 5.59184 5.78014 5.80454 6.22434 6.52817 7.12007 7.32303 7.93939 8.06312 9.18844 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.010875 B = 0.005898 C = 0.004800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2574.190480 B = 4746.451446 C = 5832.005431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.987 5.987 2 C -0.065 4.065 3 Si 0.934 3.066 4 H -0.299 1.299 5 H -0.293 1.293 6 H -0.247 1.247 7 C -0.201 4.201 8 H 0.054 0.946 9 N -0.736 5.736 10 C 0.156 3.844 11 H 0.039 0.961 12 C -0.111 4.111 13 C -0.113 4.113 14 C -0.131 4.131 15 C -0.130 4.130 16 C 0.092 3.908 17 N -0.587 5.587 18 C 0.497 3.503 19 O -0.567 6.567 20 C -0.184 4.184 21 C 0.241 3.759 22 F -0.185 7.185 23 F -0.209 7.209 24 C 0.245 3.755 25 F -0.202 7.202 26 F -0.184 7.184 27 C 0.100 3.900 28 H 0.252 0.748 29 H 0.367 0.633 30 H 0.060 0.940 31 H 0.106 0.894 32 H 0.025 0.975 33 H 0.086 0.914 34 H 0.051 0.949 35 H 0.032 0.968 36 H 0.105 0.895 37 H 0.084 0.916 38 H 0.103 0.897 39 H 0.110 0.890 40 H 0.148 0.852 41 H 0.188 0.812 42 H 0.214 0.786 43 H 0.037 0.963 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.474 -4.920 -9.443 30.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.639 5.639 2 C -0.256 4.256 3 Si 0.763 3.237 4 H -0.227 1.227 5 H -0.220 1.220 6 H -0.171 1.171 7 C -0.333 4.333 8 H 0.072 0.928 9 N -0.380 5.380 10 C 0.046 3.954 11 H 0.057 0.943 12 C -0.149 4.149 13 C -0.151 4.151 14 C -0.169 4.169 15 C -0.168 4.168 16 C -0.029 4.029 17 N -0.319 5.319 18 C 0.285 3.715 19 O -0.445 6.445 20 C -0.223 4.223 21 C 0.203 3.797 22 F -0.166 7.166 23 F -0.190 7.190 24 C 0.191 3.809 25 F -0.183 7.183 26 F -0.165 7.165 27 C -0.026 4.026 28 H 0.061 0.939 29 H 0.203 0.797 30 H 0.079 0.921 31 H 0.124 0.876 32 H 0.044 0.956 33 H 0.105 0.895 34 H 0.069 0.931 35 H 0.051 0.949 36 H 0.124 0.876 37 H 0.102 0.898 38 H 0.121 0.879 39 H 0.128 0.872 40 H 0.166 0.834 41 H 0.206 0.794 42 H 0.230 0.770 43 H 0.056 0.944 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 27.627 -4.943 -9.466 29.619 hybrid contribution -1.427 1.627 0.165 2.170 sum 26.200 -3.316 -9.301 27.998 Atomic orbital electron populations 1.69852 1.06829 1.25848 1.61416 1.25262 0.95884 1.00386 1.04031 0.85723 0.79305 0.81602 0.77045 1.22694 1.21991 1.17143 1.18994 0.83190 0.92801 1.38325 0.92810 1.42746 1.01794 1.04325 1.89148 1.20789 0.93517 0.87246 0.93802 0.94321 1.21607 0.95375 0.97020 1.00887 1.21183 1.01064 0.96041 0.96766 1.21505 0.99309 0.99321 0.96786 1.21985 0.97508 0.97163 1.00116 1.21917 0.77469 1.00146 1.03392 1.47657 1.08471 1.42108 1.33684 1.20658 0.88428 0.80711 0.81752 1.90902 1.17926 1.65169 1.70488 1.23047 0.99190 1.01804 0.98282 1.22545 0.85210 0.84034 0.87865 1.93071 1.79495 1.69437 1.74558 1.93105 1.72970 1.71933 1.80991 1.23350 0.87998 0.86487 0.83065 1.93039 1.78011 1.80184 1.67031 1.93055 1.76598 1.71722 1.75159 1.22412 0.93967 0.93272 0.92910 0.93919 0.79694 0.92082 0.87580 0.95605 0.89534 0.93066 0.94950 0.87637 0.89754 0.87865 0.87196 0.83420 0.79440 0.76980 0.94419 0.87728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -69.60 13.97 21.65 0.30 -69.30 16 2 C -0.07 -4.26 5.50 84.86 0.47 -3.80 16 3 Si 0.93 51.92 27.74 68.60 1.90 53.83 16 4 H -0.30 -17.48 7.11 99.48 0.71 -16.77 16 5 H -0.29 -16.16 7.11 99.48 0.71 -15.45 16 6 H -0.25 -12.14 6.52 99.48 0.65 -11.50 16 7 C -0.20 -12.39 10.35 84.03 0.87 -11.52 16 8 H 0.05 3.61 8.05 -2.91 -0.02 3.58 16 9 N -0.74 -35.62 4.36 -323.14 -1.41 -37.03 16 10 C 0.16 5.60 2.63 44.84 0.12 5.72 16 11 H 0.04 1.51 8.11 -1.31 -0.01 1.50 16 12 C -0.11 -2.70 5.03 29.99 0.15 -2.55 16 13 C -0.11 -2.89 4.74 30.00 0.14 -2.75 16 14 C -0.13 -3.22 4.73 30.25 0.14 -3.07 16 15 C -0.13 -1.57 4.78 30.26 0.14 -1.43 16 16 C 0.09 1.11 4.48 86.37 0.39 1.50 16 17 N -0.59 -15.12 1.72 -819.75 -1.41 -16.53 16 18 C 0.50 16.27 6.33 87.60 0.55 16.82 16 19 O -0.57 -27.51 14.22 -3.01 -0.04 -27.56 16 20 C -0.18 -3.68 3.86 29.85 0.12 -3.56 16 21 C 0.24 6.59 1.40 30.60 0.04 6.63 16 22 F -0.18 -5.87 16.12 44.97 0.73 -5.14 16 23 F -0.21 -8.69 16.11 44.97 0.72 -7.96 16 24 C 0.24 4.17 4.83 71.98 0.35 4.52 16 25 F -0.20 -4.86 17.30 44.97 0.78 -4.08 16 26 F -0.18 -3.40 16.80 44.97 0.76 -2.65 16 27 C 0.10 3.17 5.38 86.16 0.46 3.64 16 28 H 0.25 17.10 8.31 -92.71 -0.77 16.33 16 29 H 0.37 17.46 1.79 -92.71 -0.17 17.29 16 30 H 0.06 1.42 8.24 -1.75 -0.01 1.40 16 31 H 0.11 1.66 4.93 -2.38 -0.01 1.65 16 32 H 0.03 0.87 7.25 -2.32 -0.02 0.85 16 33 H 0.09 1.60 8.23 -1.84 -0.02 1.59 16 34 H 0.05 1.21 8.27 -1.52 -0.01 1.19 16 35 H 0.03 1.11 4.29 -2.88 -0.01 1.10 16 36 H 0.11 0.72 8.10 -1.96 -0.02 0.70 16 37 H 0.08 0.66 7.28 -1.95 -0.01 0.64 16 38 H 0.10 0.45 7.12 -1.84 -0.01 0.44 16 39 H 0.11 0.83 6.35 -2.25 -0.01 0.82 16 40 H 0.15 2.39 6.19 -2.39 -0.01 2.38 16 41 H 0.19 1.21 7.48 -2.39 -0.02 1.19 16 42 H 0.21 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.04 1.63 7.08 -2.09 -0.01 1.62 16 44 H 0.10 2.33 8.14 -2.09 -0.02 2.32 16 Total: -1.00 -99.91 346.43 7.14 -92.77 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: 0.87 Total: 13.49 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: 3.95 Total: 10.16 kcal Atomic # 7 Polarization: -120.34 SS G_CDS: -2.52 Total: -122.86 kcal Atomic # 8 Polarization: -27.51 SS G_CDS: -0.04 Total: -27.56 kcal Atomic # 9 Polarization: -22.81 SS G_CDS: 2.98 Total: -19.83 kcal Atomic # 14 Polarization: 51.92 SS G_CDS: 1.90 Total: 53.83 kcal Total: -99.91 7.14 -92.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264122222.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.961 kcal (2) G-P(sol) polarization free energy of solvation -99.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -243.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -236.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds