Wall clock time and date at job start Tue Mar 31 2020 23:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86801 * 120.00341 * 2 1 4 4 H 1.48490 * 109.47302 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46708 * 300.00501 * 3 2 1 6 6 H 1.48496 * 109.46785 * 59.99891 * 3 2 1 7 7 C 1.38800 * 119.99855 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99912 * 179.97438 * 7 2 1 9 9 S 1.76204 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.81000 * 99.99971 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.46878 * 180.02562 * 10 9 7 12 12 O 1.21278 * 120.00246 * 0.02562 * 11 10 9 13 13 N 1.34781 * 119.99643 * 179.97438 * 11 10 9 14 14 C 1.47864 * 126.92721 * 0.02562 * 13 11 10 15 15 C 1.56026 * 105.11025 * 181.93439 * 14 13 11 16 16 H 1.08999 * 116.90624 * 159.22387 * 15 14 13 17 17 C 1.57079 * 99.60129 * 32.79923 * 15 14 13 18 18 C 1.49279 * 126.92731 * 179.97438 * 13 11 10 19 19 H 1.09003 * 116.75625 * 16.47357 * 18 13 11 20 20 C 1.56012 * 104.13274 * 246.89527 * 18 13 11 21 21 N 1.48285 * 105.06752 * 288.79641 * 20 18 13 22 22 C 1.46901 * 110.99820 * 122.54098 * 21 20 18 23 23 C 1.53005 * 109.46852 * 76.40100 * 22 21 20 24 24 H 1.09003 * 109.51920 * 304.99757 * 23 22 21 25 25 C 1.53176 * 109.51832 * 184.87344 * 23 22 21 26 26 C 1.53190 * 109.02762 * 183.17211 * 25 23 22 27 27 C 1.53093 * 109.21237 * 56.88889 * 26 25 23 28 28 O 1.42910 * 109.41475 * 302.42062 * 27 26 25 29 29 C 1.42905 * 114.09540 * 61.15829 * 28 27 26 30 30 H 0.96998 * 119.99604 * 359.97438 * 1 2 3 31 31 H 1.08996 * 109.47126 * 60.00178 * 10 9 7 32 32 H 1.09002 * 109.47057 * 300.00534 * 10 9 7 33 33 H 1.08998 * 110.31698 * 63.02381 * 14 13 11 34 34 H 1.09002 * 110.39451 * 300.88188 * 14 13 11 35 35 H 1.08996 * 112.35689 * 191.74471 * 17 15 14 36 36 H 1.09005 * 112.43409 * 64.35655 * 17 15 14 37 37 H 1.08994 * 110.32192 * 169.90031 * 20 18 13 38 38 H 1.09000 * 110.40395 * 47.73880 * 20 18 13 39 39 H 1.08994 * 109.47165 * 316.39615 * 22 21 20 40 40 H 1.08999 * 109.46809 * 196.39723 * 22 21 20 41 41 H 1.08994 * 109.54926 * 302.97829 * 25 23 22 42 42 H 1.09001 * 109.54872 * 63.24803 * 25 23 22 43 43 H 1.08996 * 109.47198 * 296.98186 * 26 25 23 44 44 H 1.09005 * 109.57409 * 176.85528 * 26 25 23 45 45 H 1.09004 * 109.48153 * 182.43794 * 27 26 25 46 46 H 1.09004 * 109.49095 * 62.40992 * 27 26 25 47 47 H 1.08993 * 109.47670 * 178.85822 * 29 28 27 48 48 H 1.09008 * 109.49034 * 58.82986 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8917 2.3963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5157 -3.8915 -0.0005 11 6 1.9871 -5.3027 -0.0012 12 8 0.7909 -5.5022 -0.0021 13 7 2.8439 -6.3432 -0.0018 14 6 4.3211 -6.2776 -0.0014 15 6 4.7942 -7.7634 -0.0533 16 1 5.8094 -7.9458 -0.4059 17 6 3.6320 -8.3786 -0.9126 18 6 2.4928 -7.7941 -0.0019 19 1 1.4701 -8.0515 -0.2775 20 6 2.9809 -8.3042 1.3893 21 7 4.4613 -8.2990 1.3041 22 6 5.0463 -7.4602 2.3587 23 6 4.9916 -8.2068 3.6931 24 1 3.9650 -8.5101 3.8990 25 6 5.4887 -7.2887 4.8140 26 6 5.5044 -8.0714 6.1307 27 6 6.3800 -9.3164 5.9663 28 8 5.8797 -10.1102 4.8884 29 6 5.8870 -9.4465 3.6228 30 1 -0.4849 0.8401 0.0004 31 1 3.1243 -3.7315 0.8894 32 1 3.1244 -3.7314 -0.8905 33 1 4.6784 -5.7983 0.9100 34 1 4.6775 -5.7361 -0.8778 35 1 3.6466 -9.4685 -0.9100 36 1 3.6035 -7.9738 -1.9242 37 1 2.6159 -9.3150 1.5712 38 1 2.6448 -7.6330 2.1795 39 1 4.4822 -6.5311 2.4387 40 1 6.0836 -7.2353 2.1105 41 1 6.4969 -6.9445 4.5834 42 1 4.8216 -6.4316 4.9062 43 1 4.4885 -8.3719 6.3869 44 1 5.9095 -7.4433 6.9241 45 1 6.3596 -9.8994 6.8871 46 1 7.4048 -9.0143 5.7501 47 1 5.5113 -10.1233 2.8554 48 1 6.9052 -9.1460 3.3756 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267702606.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:58:24 Heat of formation + Delta-G solvation = -48.485265 kcal Electronic energy + Delta-G solvation = -28054.748668 eV Core-core repulsion = 24236.603707 eV Total energy + Delta-G solvation = -3818.144961 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.39693 -39.55613 -38.20336 -35.25719 -33.47466 -32.46667 -32.17068 -30.51536 -29.84860 -28.65091 -25.78275 -25.55015 -25.27553 -24.86626 -22.52368 -21.52419 -20.60724 -20.27773 -18.70163 -17.78403 -16.91008 -16.80600 -16.44262 -16.33556 -15.69188 -15.26723 -14.97916 -14.84237 -14.77396 -14.42441 -14.05107 -13.73613 -13.56055 -13.42114 -13.04729 -12.87819 -12.73753 -12.59169 -12.43147 -12.22479 -12.04732 -11.78895 -11.67741 -11.51531 -11.40052 -11.30474 -11.10203 -11.07288 -11.05178 -10.78883 -10.76501 -10.55671 -9.84418 -9.72574 -9.49492 -9.11039 -8.81208 -8.36769 -8.27600 -6.54597 -6.25417 -3.96394 2.77715 2.98914 3.18514 3.21898 3.27806 3.47608 3.53711 3.65870 4.06654 4.16464 4.25223 4.41750 4.48776 4.52422 4.62322 4.68106 4.76014 4.86862 4.90235 5.05752 5.09785 5.10282 5.17403 5.23110 5.27254 5.29348 5.36591 5.42548 5.49438 5.50714 5.55838 5.58479 5.63962 5.65135 5.70660 5.72229 5.73145 5.78376 5.85114 5.93969 6.04036 6.07582 6.25425 6.46582 6.70018 6.97273 7.55907 7.62765 8.31599 8.49387 9.19916 10.82102 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012925 B = 0.002703 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.863278 B =10355.667632 C =11699.632665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.146 4.146 11 C 0.551 3.449 12 O -0.514 6.514 13 N -0.628 5.628 14 C 0.066 3.934 15 C 0.053 3.947 16 H 0.134 0.866 17 C -0.134 4.134 18 C 0.113 3.887 19 H 0.126 0.874 20 C 0.026 3.974 21 N -0.513 5.513 22 C 0.047 3.953 23 C -0.114 4.114 24 H 0.079 0.921 25 C -0.120 4.120 26 C -0.155 4.155 27 C 0.060 3.940 28 O -0.386 6.386 29 C 0.076 3.924 30 H 0.268 0.732 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.064 0.936 39 H 0.050 0.950 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.090 0.910 46 H 0.048 0.952 47 H 0.104 0.896 48 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.743 -20.204 5.935 26.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.683 4.683 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.296 4.296 11 C 0.340 3.660 12 O -0.388 6.388 13 N -0.366 5.366 14 C -0.058 4.058 15 C -0.055 4.055 16 H 0.152 0.848 17 C -0.172 4.172 18 C 0.009 3.991 19 H 0.144 0.856 20 C -0.103 4.103 21 N -0.237 5.237 22 C -0.081 4.081 23 C -0.133 4.133 24 H 0.097 0.903 25 C -0.158 4.158 26 C -0.193 4.193 27 C -0.017 4.017 28 O -0.305 6.305 29 C -0.001 4.001 30 H 0.078 0.922 31 H 0.103 0.897 32 H 0.106 0.894 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.112 0.888 36 H 0.103 0.897 37 H 0.106 0.894 38 H 0.083 0.917 39 H 0.068 0.932 40 H 0.094 0.906 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.108 0.892 46 H 0.066 0.934 47 H 0.123 0.877 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 13.874 -20.992 6.056 25.881 hybrid contribution 1.791 2.674 -0.049 3.219 sum 15.665 -18.318 6.007 24.840 Atomic orbital electron populations 1.70029 1.05953 1.27389 1.46856 1.25001 0.95040 0.99052 0.94509 0.86109 0.79556 0.81839 0.77951 1.19630 1.20511 1.20524 1.22883 0.94873 0.91573 1.58951 0.90954 1.85409 1.04880 0.96362 1.96697 1.23494 1.06442 0.95111 1.04563 1.20029 0.85679 0.85369 0.74939 1.90710 1.14820 1.85048 1.48247 1.49296 1.06160 1.05536 1.75637 1.23172 0.81250 0.98730 1.02654 1.24681 0.99803 0.91113 0.89931 0.84842 1.23954 0.93677 1.01280 0.98304 1.23955 0.99958 0.80228 0.94975 0.85573 1.23749 0.87655 1.01720 0.97151 1.64933 1.08476 1.48653 1.01631 1.22359 1.00048 0.94724 0.90951 1.21745 1.01321 0.96259 0.94003 0.90265 1.21633 1.01725 0.98217 0.94221 1.22172 1.01612 0.97523 0.97964 1.22557 0.96040 0.92476 0.90646 1.87948 1.85341 1.40283 1.16901 1.22569 0.97926 0.94338 0.85248 0.92195 0.89661 0.89435 0.90652 0.90947 0.88781 0.89683 0.89376 0.91728 0.93228 0.90613 0.91757 0.91283 0.91037 0.90895 0.89181 0.93409 0.87750 0.93716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.16 13.22 55.49 0.73 -25.43 16 2 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.37 29.55 -169.99 -5.02 16.34 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 7 C -0.53 -15.25 9.50 30.94 0.29 -14.96 16 8 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.15 -3.01 5.44 36.00 0.20 -2.82 16 11 C 0.55 10.64 7.91 -10.99 -0.09 10.55 16 12 O -0.51 -11.92 16.22 5.56 0.09 -11.83 16 13 N -0.63 -8.87 2.95 -156.77 -0.46 -9.33 16 14 C 0.07 0.70 5.63 -1.67 -0.01 0.69 16 15 C 0.05 0.42 5.21 -62.33 -0.32 0.09 16 16 H 0.13 0.78 8.14 -51.93 -0.42 0.36 16 17 C -0.13 -1.13 6.81 -22.28 -0.15 -1.28 16 18 C 0.11 1.29 5.22 -62.54 -0.33 0.96 16 19 H 0.13 1.55 8.08 -51.93 -0.42 1.13 16 20 C 0.03 0.26 5.64 -1.45 -0.01 0.26 16 21 N -0.51 -4.41 4.73 -216.78 -1.03 -5.43 16 22 C 0.05 0.41 3.04 -3.82 -0.01 0.39 16 23 C -0.11 -0.98 2.44 -90.48 -0.22 -1.20 16 24 H 0.08 0.80 7.55 -51.93 -0.39 0.41 16 25 C -0.12 -0.97 5.32 -26.54 -0.14 -1.11 16 26 C -0.15 -1.17 6.13 -26.59 -0.16 -1.33 16 27 C 0.06 0.46 6.84 37.21 0.25 0.71 16 28 O -0.39 -3.90 10.77 -35.23 -0.38 -4.28 16 29 C 0.08 0.65 5.99 37.20 0.22 0.87 16 30 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 32 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 33 H 0.08 0.81 5.53 -51.93 -0.29 0.52 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.79 7.30 -51.93 -0.38 0.41 16 39 H 0.05 0.52 6.10 -51.93 -0.32 0.20 16 40 H 0.08 0.57 8.03 -51.93 -0.42 0.15 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 47 H 0.10 0.92 7.83 -51.93 -0.41 0.52 16 48 H 0.04 0.35 8.14 -51.92 -0.42 -0.07 16 LS Contribution 386.48 15.07 5.82 5.82 Total: -1.00 -34.12 386.48 -11.11 -45.23 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -8.08 Total: -1.08 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: -0.57 Total: -6.16 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: -0.75 Total: -40.19 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: -0.29 Total: -16.11 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.12 -11.11 -45.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267702606.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.254 kcal (2) G-P(sol) polarization free energy of solvation -34.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds