Wall clock time and date at job start Tue Mar 31 2020 23:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 120.00368 * 2 1 4 4 H 1.48499 * 109.47229 * 240.00283 * 3 2 1 5 5 H 1.48508 * 109.46787 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47002 * 120.00007 * 3 2 1 7 7 C 1.38815 * 120.00039 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00331 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99789 * 359.97438 * 7 2 1 10 10 C 1.46494 * 119.99895 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.47146 * 35.00403 * 10 9 7 12 12 C 1.52993 * 109.47389 * 274.99993 * 10 9 7 13 13 O 1.42903 * 109.47257 * 294.99899 * 12 10 9 14 14 C 1.53003 * 109.46985 * 155.00020 * 10 9 7 15 15 N 1.46506 * 109.47388 * 305.00023 * 14 10 9 16 16 C 1.34777 * 120.00228 * 179.97438 * 15 14 10 17 17 O 1.21571 * 119.99765 * 359.97438 * 16 15 14 18 18 C 1.47716 * 119.99701 * 180.02562 * 16 15 14 19 19 C 1.39709 * 120.01897 * 179.97438 * 18 16 15 20 20 C 1.37667 * 119.97055 * 180.02562 * 19 18 16 21 21 C 1.39503 * 120.02800 * 0.02562 * 20 19 18 22 22 C 1.48276 * 119.97625 * 179.97438 * 21 20 19 23 23 C 1.39400 * 120.12726 * 179.97438 * 22 21 20 24 24 C 1.37998 * 119.87388 * 180.02562 * 23 22 21 25 25 C 1.38342 * 120.12652 * 0.02562 * 24 23 22 26 26 C 1.38327 * 120.25412 * 0.27554 * 25 24 23 27 27 C 1.38009 * 120.13032 * 359.44544 * 26 25 24 28 28 C 1.39496 * 120.04779 * 0.25225 * 21 20 19 29 29 C 1.37671 * 120.02463 * 359.45057 * 28 21 20 30 30 H 0.96998 * 120.00116 * 359.97438 * 1 2 3 31 31 H 0.97004 * 120.00017 * 359.97438 * 9 7 2 32 32 H 1.09001 * 109.47009 * 55.00125 * 12 10 9 33 33 H 1.09010 * 109.47235 * 174.99895 * 12 10 9 34 34 H 0.96703 * 113.99628 * 180.02562 * 13 12 10 35 35 H 1.08998 * 109.47169 * 184.99938 * 14 10 9 36 36 H 1.09000 * 109.47250 * 65.00149 * 14 10 9 37 37 H 0.97000 * 119.99708 * 0.02562 * 15 14 10 38 38 H 1.07996 * 120.01417 * 0.04611 * 19 18 16 39 39 H 1.08002 * 119.98672 * 179.97438 * 20 19 18 40 40 H 1.08002 * 120.06262 * 0.02562 * 23 22 21 41 41 H 1.07999 * 119.94047 * 180.02562 * 24 23 22 42 42 H 1.08002 * 119.86974 * 179.97438 * 25 24 23 43 43 H 1.08003 * 119.93974 * 179.71804 * 26 25 24 44 44 H 1.07992 * 120.06617 * 180.27406 * 27 26 25 45 45 H 1.07998 * 119.99018 * 179.72744 * 28 21 20 46 46 H 1.08000 * 120.01527 * 180.25236 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0017 11 1 2.9691 -3.5508 0.5872 12 6 2.4207 -4.0350 -1.4390 13 8 1.2259 -4.2877 -2.1812 14 6 1.1812 -4.7524 0.6082 15 7 0.7355 -4.3363 1.9403 16 6 -0.0538 -5.1484 2.6711 17 8 -0.3963 -6.2260 2.2245 18 6 -0.5035 -4.7286 4.0140 19 6 -1.3221 -5.5698 4.7717 20 6 -1.7411 -5.1773 6.0229 21 6 -1.3490 -3.9399 6.5341 22 6 -1.8014 -3.5181 7.8817 23 6 -1.4110 -2.2826 8.3959 24 6 -1.8347 -1.8954 9.6508 25 6 -2.6448 -2.7311 10.3986 26 6 -3.0302 -3.9609 9.8962 27 6 -2.6174 -4.3562 8.6400 28 6 -0.5364 -3.0968 5.7761 29 6 -0.1112 -3.4898 4.5271 30 1 -0.4850 0.8400 0.0004 31 1 0.3554 -2.3881 0.0002 32 1 2.9700 -3.2156 -1.9027 33 1 3.0413 -4.9312 -1.4334 34 1 1.3805 -4.5340 -3.1034 35 1 1.7561 -5.6749 0.6890 36 1 0.3131 -4.9200 -0.0294 37 1 1.0080 -3.4761 2.2961 38 1 -1.6259 -6.5277 4.3761 39 1 -2.3743 -5.8272 6.6087 40 1 -0.7782 -1.6296 7.8131 41 1 -1.5332 -0.9383 10.0500 42 1 -2.9736 -2.4241 11.3805 43 1 -3.6591 -4.6112 10.4862 44 1 -2.9226 -5.3147 8.2469 45 1 -0.2370 -2.1372 6.1710 46 1 0.5213 -2.8386 3.9420 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278186235.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:40 Heat of formation + Delta-G solvation = -44.390918 kcal Electronic energy + Delta-G solvation = -27947.581464 eV Core-core repulsion = 23994.170096 eV Total energy + Delta-G solvation = -3953.411368 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.35594 -40.37451 -38.98947 -38.44953 -36.41680 -35.26922 -33.92574 -33.10614 -32.46199 -31.46131 -30.50194 -29.68234 -26.85177 -25.66819 -24.92387 -24.39508 -22.56850 -22.31616 -21.62821 -21.13753 -19.57610 -19.02787 -18.16443 -18.01577 -17.38548 -16.91246 -16.70464 -16.24742 -16.07600 -15.94561 -15.35920 -15.25518 -15.09718 -15.02270 -14.83540 -14.78420 -14.51944 -14.32635 -14.22745 -13.92896 -13.69171 -13.23522 -13.07184 -13.00910 -12.73740 -12.63010 -12.41092 -12.28373 -12.04196 -11.91622 -11.73093 -11.60122 -11.12741 -10.91499 -10.73972 -10.71972 -10.06804 -10.05303 -9.85427 -9.03655 -9.00822 -7.89124 -5.18956 -0.61086 0.35770 0.50625 0.65815 1.50499 1.52137 1.58260 1.85553 2.21017 2.58209 2.72508 3.10607 3.42364 3.49968 3.61048 3.67085 3.78923 3.88400 3.90452 4.00942 4.11290 4.13812 4.24961 4.31909 4.36417 4.43053 4.53740 4.55706 4.60298 4.71839 4.72783 4.84649 4.94289 4.99362 5.00982 5.16371 5.21213 5.24342 5.26938 5.32015 5.46029 5.55370 5.56551 5.61771 5.72765 5.82878 6.08305 6.28802 6.52879 7.06512 7.15832 7.37103 8.08809 8.34817 9.33281 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010694 B = 0.002694 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2617.576744 B =10391.677418 C =12667.242850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.070 4.070 3 Si 0.968 3.032 4 H -0.283 1.283 5 H -0.303 1.303 6 H -0.274 1.274 7 C -0.238 4.238 8 H 0.082 0.918 9 N -0.722 5.722 10 C 0.161 3.839 11 H 0.081 0.919 12 C 0.065 3.935 13 O -0.584 6.584 14 C 0.128 3.872 15 N -0.705 5.705 16 C 0.550 3.450 17 O -0.584 6.584 18 C -0.151 4.151 19 C -0.064 4.064 20 C -0.119 4.119 21 C -0.021 4.021 22 C -0.071 4.071 23 C -0.121 4.121 24 C -0.128 4.128 25 C -0.119 4.119 26 C -0.125 4.125 27 C -0.116 4.116 28 C -0.123 4.123 29 C -0.081 4.081 30 H 0.248 0.752 31 H 0.372 0.628 32 H 0.038 0.962 33 H 0.066 0.934 34 H 0.385 0.615 35 H 0.080 0.920 36 H 0.051 0.949 37 H 0.409 0.591 38 H 0.137 0.863 39 H 0.159 0.841 40 H 0.132 0.868 41 H 0.142 0.858 42 H 0.146 0.854 43 H 0.148 0.852 44 H 0.141 0.859 45 H 0.148 0.852 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.120 -8.848 18.866 20.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.262 4.262 3 Si 0.798 3.202 4 H -0.209 1.209 5 H -0.229 1.229 6 H -0.200 1.200 7 C -0.370 4.370 8 H 0.100 0.900 9 N -0.362 5.362 10 C 0.051 3.949 11 H 0.098 0.902 12 C -0.016 4.016 13 O -0.391 6.391 14 C 0.004 3.996 15 N -0.356 5.356 16 C 0.339 3.661 17 O -0.466 6.466 18 C -0.154 4.154 19 C -0.083 4.083 20 C -0.136 4.136 21 C -0.021 4.021 22 C -0.071 4.071 23 C -0.139 4.139 24 C -0.145 4.145 25 C -0.137 4.137 26 C -0.143 4.143 27 C -0.133 4.133 28 C -0.141 4.141 29 C -0.100 4.100 30 H 0.057 0.943 31 H 0.204 0.796 32 H 0.056 0.944 33 H 0.084 0.916 34 H 0.233 0.767 35 H 0.098 0.902 36 H 0.070 0.930 37 H 0.247 0.753 38 H 0.155 0.845 39 H 0.176 0.824 40 H 0.149 0.851 41 H 0.160 0.840 42 H 0.164 0.836 43 H 0.166 0.834 44 H 0.158 0.842 45 H 0.165 0.835 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.447 -9.315 19.098 21.298 hybrid contribution 0.427 1.395 -1.120 1.839 sum -1.020 -7.920 17.979 19.672 Atomic orbital electron populations 1.69840 1.06658 1.25848 1.59242 1.25482 0.96106 1.00802 1.03832 0.85296 0.77114 0.79630 0.78146 1.20930 1.22938 1.19967 1.19573 0.91472 0.84778 1.41168 0.90049 1.42476 1.05333 1.00197 1.88231 1.20858 0.95081 0.85301 0.93624 0.90162 1.22872 0.86517 0.98646 0.93552 1.86528 1.32892 1.92076 1.27615 1.21438 0.98590 0.97353 0.82232 1.45925 1.50267 1.21657 1.17745 1.18628 0.78001 0.83805 0.85639 1.90695 1.58584 1.23992 1.73366 1.20008 1.03625 0.97315 0.94495 1.21272 0.94190 0.99182 0.93665 1.21402 1.00761 0.96302 0.95171 1.19191 0.95589 0.94055 0.93298 1.18908 0.99579 0.95744 0.92827 1.21535 0.99997 0.95653 0.96669 1.21416 0.98094 1.00865 0.94171 1.21631 0.97110 0.94181 1.00799 1.21444 1.00165 0.97170 0.95497 1.21548 0.96944 0.99988 0.94850 1.21369 0.98240 1.00648 0.93810 1.21396 0.98145 0.94425 0.96021 0.94289 0.79641 0.94408 0.91575 0.76662 0.90202 0.93017 0.75289 0.84542 0.82382 0.85054 0.83984 0.83614 0.83440 0.84177 0.83454 0.85156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.74 13.06 21.65 0.28 -57.45 16 2 C -0.07 -3.81 5.50 84.86 0.47 -3.34 16 3 Si 0.97 44.29 29.55 68.60 2.03 46.32 16 4 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 5 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.24 -12.28 9.93 84.03 0.83 -11.44 16 8 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 9 N -0.72 -34.31 4.51 -322.96 -1.46 -35.77 16 10 C 0.16 5.96 2.84 44.99 0.13 6.09 16 11 H 0.08 2.75 8.08 -2.39 -0.02 2.73 16 12 C 0.06 2.13 6.85 71.98 0.49 2.63 16 13 O -0.58 -20.48 12.64 -148.98 -1.88 -22.37 16 14 C 0.13 4.65 5.12 86.38 0.44 5.09 16 15 N -0.71 -25.47 5.34 -466.08 -2.49 -27.96 16 16 C 0.55 20.43 7.77 86.75 0.67 21.11 16 17 O -0.58 -24.70 16.33 -3.94 -0.06 -24.76 16 18 C -0.15 -4.80 5.88 -20.06 -0.12 -4.91 16 19 C -0.06 -1.76 9.58 22.49 0.22 -1.55 16 20 C -0.12 -2.65 9.41 22.44 0.21 -2.44 16 21 C -0.02 -0.48 5.88 -20.00 -0.12 -0.60 16 22 C -0.07 -1.42 5.88 -20.05 -0.12 -1.54 16 23 C -0.12 -2.23 9.43 22.49 0.21 -2.02 16 24 C -0.13 -1.92 10.03 22.24 0.22 -1.70 16 25 C -0.12 -1.56 10.04 22.32 0.22 -1.33 16 26 C -0.13 -1.68 10.03 22.24 0.22 -1.45 16 27 C -0.12 -1.90 9.43 22.50 0.21 -1.68 16 28 C -0.12 -3.04 9.41 22.44 0.21 -2.83 16 29 C -0.08 -2.33 9.52 22.49 0.21 -2.12 16 30 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 31 H 0.37 20.17 7.80 -92.71 -0.72 19.45 16 32 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 34 H 0.39 9.46 9.12 -74.06 -0.68 8.78 16 35 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 36 H 0.05 2.16 7.39 -2.39 -0.02 2.14 16 37 H 0.41 14.66 6.16 -92.71 -0.57 14.09 16 38 H 0.14 3.68 7.64 -2.91 -0.02 3.66 16 39 H 0.16 2.49 6.19 -2.91 -0.02 2.47 16 40 H 0.13 2.20 6.19 -2.91 -0.02 2.18 16 41 H 0.14 1.53 8.06 -2.91 -0.02 1.50 16 42 H 0.15 1.14 8.06 -2.91 -0.02 1.11 16 43 H 0.15 1.20 8.06 -2.91 -0.02 1.18 16 44 H 0.14 1.78 6.19 -2.91 -0.02 1.76 16 45 H 0.15 3.04 6.19 -2.91 -0.02 3.02 16 46 H 0.13 3.77 6.39 -2.91 -0.02 3.75 16 Total: -1.00 -71.69 387.34 0.13 -71.55 By element: Atomic # 1 Polarization: 55.41 SS G_CDS: -0.92 Total: 54.49 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: 4.63 Total: -4.05 kcal Atomic # 7 Polarization: -117.52 SS G_CDS: -3.66 Total: -121.19 kcal Atomic # 8 Polarization: -45.18 SS G_CDS: -1.95 Total: -47.13 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -71.69 0.13 -71.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278186235.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.164 kcal (2) G-P(sol) polarization free energy of solvation -71.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds