Wall clock time and date at job start Tue Mar 31 2020 23:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31638 * 1 3 3 Si 1.86800 * 119.99713 * 2 1 4 4 H 1.48502 * 109.46755 * 239.99830 * 3 2 1 5 5 H 1.48507 * 109.46978 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47601 * 119.99775 * 3 2 1 7 7 C 1.38794 * 120.00286 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00057 * 180.02562 * 7 2 1 9 9 S 1.76204 * 119.99945 * 0.02562 * 7 2 1 10 10 C 1.80996 * 99.99896 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47102 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99943 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99937 * 180.02562 * 11 10 9 14 14 C 1.46497 * 119.99862 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47213 * 179.97438 * 14 13 11 16 16 H 1.08998 * 110.43312 * 303.91384 * 15 14 13 17 17 C 1.54266 * 110.48561 * 66.45091 * 15 14 13 18 18 C 1.53872 * 106.60044 * 142.28833 * 17 15 14 19 19 C 1.54266 * 106.59640 * 359.97438 * 18 17 15 20 20 H 1.09001 * 110.48620 * 95.07012 * 19 18 17 21 21 N 1.46506 * 110.48818 * 217.70889 * 19 18 17 22 22 C 1.34771 * 120.00040 * 273.54848 * 21 19 18 23 23 O 1.21282 * 120.00064 * 0.02562 * 22 21 19 24 24 C 1.50704 * 119.99845 * 179.97438 * 22 21 19 25 25 C 1.53002 * 109.46967 * 179.97438 * 24 22 21 26 26 C 1.53004 * 117.50019 * 243.62114 * 25 24 22 27 27 C 1.52998 * 117.49758 * 174.99873 * 25 24 22 28 28 C 1.54887 * 104.19888 * 336.38805 * 19 18 17 29 29 H 0.97000 * 120.00123 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.47744 * 59.99573 * 10 9 7 31 31 H 1.09006 * 109.47308 * 299.99952 * 10 9 7 32 32 H 0.96998 * 120.00251 * 359.97438 * 13 11 10 33 33 H 1.08997 * 109.47683 * 59.99318 * 14 13 11 34 34 H 1.09004 * 109.47108 * 299.99326 * 14 13 11 35 35 H 1.09002 * 110.02957 * 23.00444 * 17 15 14 36 36 H 1.09000 * 110.07144 * 261.59817 * 17 15 14 37 37 H 1.09003 * 110.03622 * 240.71485 * 18 17 15 38 38 H 1.09005 * 110.03465 * 119.28158 * 18 17 15 39 39 H 0.97005 * 119.99609 * 93.54377 * 21 19 18 40 40 H 1.08998 * 109.47060 * 299.99735 * 24 22 21 41 41 H 1.08999 * 109.47191 * 60.00123 * 24 22 21 42 42 H 1.09007 * 115.55154 * 29.33317 * 25 24 22 43 43 H 1.08999 * 117.49824 * 0.02562 * 26 25 24 44 44 H 1.08997 * 117.49607 * 145.02429 * 26 25 24 45 45 H 1.08998 * 117.49931 * 214.97953 * 27 25 24 46 46 H 1.09001 * 117.50287 * 359.97438 * 27 25 24 47 47 H 1.09001 * 110.75744 * 156.25305 * 28 19 18 48 48 H 1.09000 * 110.75698 * 279.63123 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6966 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2019 0.0010 9 16 1.1294 -2.7280 0.0005 10 6 2.5160 -3.8913 0.0005 11 6 1.9876 -5.3026 -0.0001 12 8 0.7914 -5.5023 0.0000 13 7 2.8445 -6.3430 0.0003 14 6 2.3308 -7.7150 0.0003 15 6 3.5029 -8.6984 0.0001 16 1 4.1606 -8.5064 -0.8475 17 6 4.2877 -8.6032 1.3249 18 6 4.7121 -10.0369 1.6884 19 6 4.1699 -10.9533 0.5722 20 1 4.9356 -11.1280 -0.1836 21 7 3.7024 -12.2234 1.1333 22 6 4.5689 -13.2396 1.3144 23 8 5.7357 -13.1026 1.0132 24 6 4.0882 -14.5458 1.8921 25 6 5.2620 -15.5223 1.9915 26 6 5.1935 -16.7974 1.1487 27 6 5.0034 -16.8714 2.6651 28 6 2.9850 -10.1582 -0.0302 29 1 -0.4850 0.8400 -0.0004 30 1 3.1247 -3.7312 0.8905 31 1 3.1247 -3.7312 -0.8895 32 1 3.8012 -6.1834 0.0006 33 1 1.7224 -7.8752 -0.8898 34 1 1.7219 -7.8750 0.8901 35 1 3.6501 -8.1927 2.1078 36 1 5.1686 -7.9749 1.1934 37 1 4.2805 -10.3222 2.6478 38 1 5.7991 -10.1047 1.7325 39 1 2.7693 -12.3328 1.3747 40 1 3.6737 -14.3732 2.8853 41 1 3.3188 -14.9678 1.2456 42 1 6.2415 -15.0667 2.1369 43 1 4.3124 -16.9405 0.5232 44 1 6.1280 -17.1809 0.7394 45 1 5.8130 -17.3037 3.2532 46 1 3.9973 -17.0633 3.0378 47 1 2.7869 -10.4763 -1.0538 48 1 2.0938 -10.2652 0.5882 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281227739.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:54:21 Heat of formation + Delta-G solvation = -74.387790 kcal Electronic energy + Delta-G solvation = -25651.432660 eV Core-core repulsion = 21832.164481 eV Total energy + Delta-G solvation = -3819.268179 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.49592 -39.40651 -38.40374 -37.36072 -35.01470 -33.53557 -32.42708 -30.73157 -29.97201 -29.00491 -27.71259 -25.50912 -24.33100 -22.85076 -22.17832 -21.18795 -20.60167 -20.17132 -19.91292 -17.85234 -17.68328 -16.94399 -16.38768 -16.17620 -15.92424 -15.76384 -15.18347 -15.05614 -14.80262 -14.52807 -14.10105 -13.95529 -13.84134 -13.68775 -13.15369 -13.03955 -12.79122 -12.66299 -12.42944 -12.03634 -11.95438 -11.90535 -11.84865 -11.50985 -11.20106 -11.08350 -11.04452 -11.03286 -10.84450 -10.76402 -10.75610 -10.52645 -10.16176 -9.82356 -9.46628 -9.39211 -9.06278 -8.87798 -8.24131 -6.50030 -6.21517 -3.92233 2.25525 2.68559 3.05249 3.10436 3.23603 3.27736 3.31424 3.34511 3.71958 4.04302 4.17840 4.20471 4.20911 4.27146 4.43610 4.49389 4.62600 4.85789 4.92046 4.97917 5.01571 5.04796 5.08978 5.13583 5.14187 5.16951 5.17359 5.19534 5.28199 5.41315 5.43072 5.56938 5.63978 5.67444 5.72195 5.75239 5.77615 5.84872 5.89209 5.91092 6.06225 6.14244 6.15764 6.62168 7.08337 7.59300 7.71262 7.83954 8.35071 8.61759 9.23709 10.85867 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.046277 B = 0.001385 C = 0.001365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.908608 B =20207.810424 C =20514.954353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.154 4.154 11 C 0.531 3.469 12 O -0.519 6.519 13 N -0.738 5.738 14 C 0.130 3.870 15 C -0.101 4.101 16 H 0.086 0.914 17 C -0.121 4.121 18 C -0.134 4.134 19 C 0.141 3.859 20 H 0.094 0.906 21 N -0.726 5.726 22 C 0.515 3.485 23 O -0.537 6.537 24 C -0.111 4.111 25 C -0.142 4.142 26 C -0.178 4.178 27 C -0.180 4.180 28 C -0.121 4.121 29 H 0.269 0.731 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.398 0.602 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.401 0.599 40 H 0.098 0.902 41 H 0.094 0.906 42 H 0.118 0.882 43 H 0.093 0.907 44 H 0.094 0.906 45 H 0.095 0.905 46 H 0.094 0.906 47 H 0.077 0.923 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.877 -31.782 3.620 33.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.317 3.683 12 O -0.393 6.393 13 N -0.393 5.393 14 C 0.006 3.994 15 C -0.121 4.121 16 H 0.104 0.896 17 C -0.159 4.159 18 C -0.172 4.172 19 C 0.036 3.964 20 H 0.112 0.888 21 N -0.378 5.378 22 C 0.302 3.698 23 O -0.413 6.413 24 C -0.151 4.151 25 C -0.160 4.160 26 C -0.215 4.215 27 C -0.217 4.217 28 C -0.160 4.160 29 H 0.079 0.921 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.232 0.768 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.235 0.765 40 H 0.116 0.884 41 H 0.113 0.887 42 H 0.136 0.864 43 H 0.112 0.888 44 H 0.113 0.887 45 H 0.114 0.886 46 H 0.113 0.887 47 H 0.096 0.904 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 8.543 -31.915 3.400 33.213 hybrid contribution 1.969 1.309 0.137 2.368 sum 10.512 -30.606 3.537 32.554 Atomic orbital electron populations 1.70010 1.05954 1.27562 1.46802 1.24983 0.95015 0.98997 0.94504 0.86231 0.79246 0.81255 0.78808 1.19937 1.20798 1.19936 1.22833 0.94885 0.91693 1.59066 0.90981 1.85384 1.04968 0.96308 1.96725 1.23535 1.06551 0.95456 1.04907 1.20305 0.86521 0.86310 0.75139 1.90699 1.15398 1.85642 1.47577 1.45985 1.09934 1.05472 1.77898 1.21289 0.95245 0.80549 1.02344 1.22171 0.96943 0.94026 0.98932 0.89597 1.22222 1.00181 0.96478 0.97004 1.22535 1.01507 0.94502 0.98693 1.21846 0.96778 0.82235 0.95527 0.88816 1.46099 1.12536 1.13523 1.65632 1.20621 0.86095 0.85238 0.77870 1.90703 1.17526 1.82769 1.50319 1.21237 0.98550 0.92672 1.02673 1.22055 1.00006 0.88679 1.05289 1.23039 1.03342 1.01487 0.93670 1.23004 1.02985 1.00224 0.95526 1.22726 0.97591 0.93860 1.01791 0.92130 0.89247 0.89248 0.76831 0.91579 0.91542 0.90940 0.91305 0.91392 0.91241 0.76460 0.88402 0.88747 0.86400 0.88828 0.88722 0.88636 0.88725 0.90409 0.90253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.15 13.22 55.49 0.73 -25.41 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.36 29.55 -169.99 -5.02 16.33 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.54 -15.27 9.50 30.94 0.29 -14.98 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 10 C -0.15 -3.07 6.16 36.01 0.22 -2.85 16 11 C 0.53 9.74 7.85 -10.98 -0.09 9.65 16 12 O -0.52 -11.66 15.86 5.56 0.09 -11.57 16 13 N -0.74 -9.37 5.39 -60.29 -0.33 -9.70 16 14 C 0.13 1.37 4.99 -4.04 -0.02 1.35 16 15 C -0.10 -0.74 2.93 -88.94 -0.26 -1.00 16 16 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 17 C -0.12 -0.88 6.05 -25.61 -0.15 -1.04 16 18 C -0.13 -0.99 6.53 -25.61 -0.17 -1.15 16 19 C 0.14 0.97 3.15 -66.27 -0.21 0.76 16 20 H 0.09 0.81 7.67 -51.93 -0.40 0.41 16 21 N -0.73 -4.24 5.11 -52.20 -0.27 -4.51 16 22 C 0.52 4.01 7.82 -10.99 -0.09 3.92 16 23 O -0.54 -6.43 15.28 5.56 0.08 -6.34 16 24 C -0.11 -0.54 5.98 -27.88 -0.17 -0.71 16 25 C -0.14 -0.89 5.41 -90.62 -0.49 -1.38 16 26 C -0.18 -0.98 10.18 -26.73 -0.27 -1.25 16 27 C -0.18 -0.86 10.25 -26.73 -0.27 -1.14 16 28 C -0.12 -0.72 5.92 -24.72 -0.15 -0.87 16 29 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 30 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 31 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 32 H 0.40 3.96 8.32 -40.82 -0.34 3.62 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.76 8.05 -51.93 -0.42 0.34 16 35 H 0.07 0.59 7.77 -51.93 -0.40 0.19 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.51 8.04 -51.93 -0.42 0.09 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.40 1.30 8.53 -40.82 -0.35 0.95 16 40 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 41 H 0.09 0.31 7.87 -51.93 -0.41 -0.10 16 42 H 0.12 0.98 7.30 -51.93 -0.38 0.60 16 43 H 0.09 0.43 8.03 -51.93 -0.42 0.02 16 44 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 48 H 0.08 0.43 7.94 -51.93 -0.41 0.01 16 LS Contribution 409.74 15.07 6.17 6.17 Total: -1.00 -36.45 409.74 -10.80 -47.25 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -8.14 Total: 0.29 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -1.91 Total: -8.66 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: 0.14 Total: -39.62 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: 0.17 Total: -17.91 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -36.45 -10.80 -47.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281227739.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.140 kcal (2) G-P(sol) polarization free energy of solvation -36.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds