Wall clock time and date at job start Tue Mar 31 2020 23:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31638 * 1 3 3 Si 1.86800 * 119.99713 * 2 1 4 4 H 1.48502 * 109.46755 * 239.99830 * 3 2 1 5 5 H 1.48507 * 109.46978 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47601 * 119.99775 * 3 2 1 7 7 C 1.38794 * 120.00286 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00057 * 180.02562 * 7 2 1 9 9 S 1.76204 * 119.99945 * 0.02562 * 7 2 1 10 10 C 1.80996 * 99.99896 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47102 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99943 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99937 * 180.02562 * 11 10 9 14 14 C 1.46497 * 119.99862 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47213 * 179.97438 * 14 13 11 16 16 H 1.08998 * 110.43312 * 303.91384 * 15 14 13 17 17 C 1.54266 * 110.48561 * 66.45091 * 15 14 13 18 18 C 1.53872 * 106.60044 * 142.28833 * 17 15 14 19 19 C 1.54266 * 106.59640 * 359.97438 * 18 17 15 20 20 H 1.09001 * 110.48620 * 95.07012 * 19 18 17 21 21 N 1.46506 * 110.48818 * 217.70889 * 19 18 17 22 22 C 1.34771 * 120.00040 * 273.54848 * 21 19 18 23 23 O 1.21282 * 120.00064 * 0.02562 * 22 21 19 24 24 C 1.50704 * 119.99845 * 179.97438 * 22 21 19 25 25 C 1.53002 * 109.46967 * 179.97438 * 24 22 21 26 26 C 1.53004 * 117.50019 * 243.62114 * 25 24 22 27 27 C 1.52998 * 117.49758 * 174.99873 * 25 24 22 28 28 C 1.54887 * 104.19888 * 336.38805 * 19 18 17 29 29 H 0.97000 * 120.00123 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.47744 * 59.99573 * 10 9 7 31 31 H 1.09006 * 109.47308 * 299.99952 * 10 9 7 32 32 H 0.96998 * 120.00251 * 359.97438 * 13 11 10 33 33 H 1.08997 * 109.47683 * 59.99318 * 14 13 11 34 34 H 1.09004 * 109.47108 * 299.99326 * 14 13 11 35 35 H 1.09002 * 110.02957 * 23.00444 * 17 15 14 36 36 H 1.09000 * 110.07144 * 261.59817 * 17 15 14 37 37 H 1.09003 * 110.03622 * 240.71485 * 18 17 15 38 38 H 1.09005 * 110.03465 * 119.28158 * 18 17 15 39 39 H 0.97005 * 119.99609 * 93.54377 * 21 19 18 40 40 H 1.08998 * 109.47060 * 299.99735 * 24 22 21 41 41 H 1.08999 * 109.47191 * 60.00123 * 24 22 21 42 42 H 1.09007 * 115.55154 * 29.33317 * 25 24 22 43 43 H 1.08999 * 117.49824 * 0.02562 * 26 25 24 44 44 H 1.08997 * 117.49607 * 145.02429 * 26 25 24 45 45 H 1.08998 * 117.49931 * 214.97953 * 27 25 24 46 46 H 1.09001 * 117.50287 * 359.97438 * 27 25 24 47 47 H 1.09001 * 110.75744 * 156.25305 * 28 19 18 48 48 H 1.09000 * 110.75698 * 279.63123 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6966 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2019 0.0010 9 16 1.1294 -2.7280 0.0005 10 6 2.5160 -3.8913 0.0005 11 6 1.9876 -5.3026 -0.0001 12 8 0.7914 -5.5023 0.0000 13 7 2.8445 -6.3430 0.0003 14 6 2.3308 -7.7150 0.0003 15 6 3.5029 -8.6984 0.0001 16 1 4.1606 -8.5064 -0.8475 17 6 4.2877 -8.6032 1.3249 18 6 4.7121 -10.0369 1.6884 19 6 4.1699 -10.9533 0.5722 20 1 4.9356 -11.1280 -0.1836 21 7 3.7024 -12.2234 1.1333 22 6 4.5689 -13.2396 1.3144 23 8 5.7357 -13.1026 1.0132 24 6 4.0882 -14.5458 1.8921 25 6 5.2620 -15.5223 1.9915 26 6 5.1935 -16.7974 1.1487 27 6 5.0034 -16.8714 2.6651 28 6 2.9850 -10.1582 -0.0302 29 1 -0.4850 0.8400 -0.0004 30 1 3.1247 -3.7312 0.8905 31 1 3.1247 -3.7312 -0.8895 32 1 3.8012 -6.1834 0.0006 33 1 1.7224 -7.8752 -0.8898 34 1 1.7219 -7.8750 0.8901 35 1 3.6501 -8.1927 2.1078 36 1 5.1686 -7.9749 1.1934 37 1 4.2805 -10.3222 2.6478 38 1 5.7991 -10.1047 1.7325 39 1 2.7693 -12.3328 1.3747 40 1 3.6737 -14.3732 2.8853 41 1 3.3188 -14.9678 1.2456 42 1 6.2415 -15.0667 2.1369 43 1 4.3124 -16.9405 0.5232 44 1 6.1280 -17.1809 0.7394 45 1 5.8130 -17.3037 3.2532 46 1 3.9973 -17.0633 3.0378 47 1 2.7869 -10.4763 -1.0538 48 1 2.0938 -10.2652 0.5882 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281227739.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:54:20 Heat of formation + Delta-G solvation = -99.237384 kcal Electronic energy + Delta-G solvation = -25652.510219 eV Core-core repulsion = 21832.164481 eV Total energy + Delta-G solvation = -3820.345738 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.13679 -40.59755 -39.20201 -37.86954 -35.97865 -34.58035 -34.41910 -31.75141 -30.64169 -29.95961 -28.46100 -27.64082 -25.21080 -23.23319 -22.73188 -21.96692 -21.46713 -20.98378 -20.59550 -19.77256 -18.22273 -17.84819 -17.61888 -16.95446 -16.89393 -16.85753 -16.48061 -16.29212 -15.88084 -15.66588 -14.97483 -14.84080 -14.67393 -14.56377 -14.42335 -14.32713 -13.72105 -13.47483 -13.28437 -13.16150 -13.11026 -12.85867 -12.66695 -12.57010 -12.37719 -12.31596 -12.11752 -11.90194 -11.75804 -11.70479 -11.38716 -11.29713 -11.12209 -10.99207 -10.92244 -10.72132 -10.27144 -10.09366 -10.02021 -8.65626 -8.33828 -6.11891 1.28115 1.44362 1.47733 1.57629 1.64086 1.67853 2.15462 2.28096 2.38739 2.93662 3.00306 3.33096 3.45053 3.58181 3.75627 3.77973 3.91370 4.01930 4.05964 4.17542 4.23459 4.29188 4.35183 4.44136 4.49984 4.52338 4.53427 4.58975 4.61630 4.68178 4.79278 4.81166 4.83127 4.89660 4.98871 5.05215 5.13843 5.18235 5.25052 5.27241 5.36536 5.40721 5.42324 5.50447 5.61147 6.20313 6.53343 6.60858 7.07496 7.27261 7.31490 8.75142 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.046277 B = 0.001385 C = 0.001365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.908608 B =20207.810424 C =20514.954353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.015 3.985 3 Si 0.997 3.003 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.549 4.549 8 H 0.082 0.918 9 S -0.151 6.151 10 C -0.131 4.131 11 C 0.533 3.467 12 O -0.567 6.567 13 N -0.712 5.712 14 C 0.130 3.870 15 C -0.091 4.091 16 H 0.095 0.905 17 C -0.118 4.118 18 C -0.129 4.129 19 C 0.143 3.857 20 H 0.076 0.924 21 N -0.714 5.714 22 C 0.510 3.490 23 O -0.586 6.586 24 C -0.103 4.103 25 C -0.159 4.159 26 C -0.184 4.184 27 C -0.168 4.168 28 C -0.112 4.112 29 H 0.271 0.729 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.415 0.585 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.055 0.945 39 H 0.416 0.584 40 H 0.119 0.881 41 H 0.117 0.883 42 H 0.089 0.911 43 H 0.105 0.895 44 H 0.087 0.913 45 H 0.095 0.905 46 H 0.112 0.888 47 H 0.086 0.914 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.836 -32.614 3.850 34.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.190 4.190 3 Si 0.819 3.181 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.696 4.696 8 H 0.100 0.900 9 S 0.076 5.924 10 C -0.282 4.282 11 C 0.319 3.681 12 O -0.445 6.445 13 N -0.366 5.366 14 C 0.006 3.994 15 C -0.110 4.110 16 H 0.114 0.886 17 C -0.156 4.156 18 C -0.168 4.168 19 C 0.038 3.962 20 H 0.094 0.906 21 N -0.366 5.366 22 C 0.299 3.701 23 O -0.466 6.466 24 C -0.143 4.143 25 C -0.178 4.178 26 C -0.221 4.221 27 C -0.204 4.204 28 C -0.151 4.151 29 H 0.080 0.920 30 H 0.127 0.873 31 H 0.127 0.873 32 H 0.252 0.748 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.254 0.746 40 H 0.137 0.863 41 H 0.135 0.865 42 H 0.107 0.893 43 H 0.123 0.877 44 H 0.106 0.894 45 H 0.114 0.886 46 H 0.130 0.870 47 H 0.105 0.895 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 9.523 -32.786 3.638 34.334 hybrid contribution 1.738 1.427 0.074 2.250 sum 11.261 -31.359 3.712 33.526 Atomic orbital electron populations 1.70177 1.07961 1.28666 1.47956 1.26102 0.95931 1.03242 0.93690 0.85026 0.77833 0.75790 0.79485 1.18693 1.20374 1.18679 1.23184 0.95357 0.92099 1.58993 0.89951 1.85549 1.10598 0.99183 1.97056 1.23387 1.03530 0.94575 1.06740 1.20031 0.86244 0.86678 0.75181 1.90688 1.17415 1.86128 1.50295 1.45751 1.10225 1.05246 1.75340 1.21437 0.96496 0.79559 1.01859 1.22090 0.95734 0.93861 0.99319 0.88624 1.22188 1.00241 0.96414 0.96711 1.22468 1.00633 0.94761 0.98933 1.21721 0.96790 0.82704 0.95023 0.90570 1.46008 1.13171 1.12760 1.64701 1.21185 0.85520 0.86322 0.77118 1.90687 1.19678 1.83695 1.52557 1.21260 0.98308 0.90616 1.04067 1.22007 0.99431 0.89510 1.06818 1.23122 1.03585 1.00961 0.94472 1.23077 1.03942 0.98466 0.94960 1.22678 0.97401 0.92445 1.02530 0.91989 0.87280 0.87298 0.74812 0.92101 0.92081 0.91545 0.90744 0.91312 0.92633 0.74631 0.86262 0.86454 0.89283 0.87662 0.89425 0.88625 0.86974 0.89514 0.89149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.85 13.22 21.65 0.29 -55.56 16 2 C 0.02 0.86 5.49 84.85 0.47 1.33 16 3 Si 1.00 43.38 29.55 68.60 2.03 45.40 16 4 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 5 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 6 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 7 C -0.55 -31.24 9.50 67.95 0.65 -30.59 16 8 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 9 S -0.15 -8.34 20.57 -56.49 -1.16 -9.50 16 10 C -0.13 -5.10 6.16 71.24 0.44 -4.67 16 11 C 0.53 19.06 7.85 87.66 0.69 19.75 16 12 O -0.57 -25.71 15.86 -3.02 -0.05 -25.75 16 13 N -0.71 -16.64 5.39 -463.06 -2.50 -19.14 16 14 C 0.13 2.50 4.99 86.38 0.43 2.93 16 15 C -0.09 -1.11 2.93 -9.71 -0.03 -1.14 16 16 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 17 C -0.12 -1.50 6.05 31.32 0.19 -1.31 16 18 C -0.13 -1.76 6.53 31.32 0.20 -1.56 16 19 C 0.14 1.78 3.15 46.06 0.15 1.92 16 20 H 0.08 1.27 7.67 -2.39 -0.02 1.25 16 21 N -0.71 -7.17 5.11 -437.44 -2.24 -9.41 16 22 C 0.51 7.52 7.82 87.66 0.69 8.21 16 23 O -0.59 -14.39 15.28 -3.03 -0.05 -14.44 16 24 C -0.10 -0.82 5.98 29.85 0.18 -0.64 16 25 C -0.16 -1.92 5.41 -10.79 -0.06 -1.98 16 26 C -0.18 -1.86 10.18 30.60 0.31 -1.55 16 27 C -0.17 -1.35 10.25 30.59 0.31 -1.04 16 28 C -0.11 -1.08 5.92 31.89 0.19 -0.89 16 29 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 30 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 31 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 32 H 0.42 7.04 8.32 -92.71 -0.77 6.27 16 33 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.06 1.30 8.05 -2.38 -0.02 1.28 16 35 H 0.07 0.96 7.77 -2.39 -0.02 0.94 16 36 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.07 0.93 8.04 -2.39 -0.02 0.91 16 38 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 39 H 0.42 1.62 8.53 -92.70 -0.79 0.83 16 40 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 41 H 0.12 0.41 7.87 -2.39 -0.02 0.39 16 42 H 0.09 1.60 7.30 -2.38 -0.02 1.58 16 43 H 0.11 0.79 8.03 -2.39 -0.02 0.77 16 44 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 47 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 48 H 0.09 0.72 7.94 -2.39 -0.02 0.70 16 Total: -1.00 -82.55 409.74 0.52 -82.03 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -0.60 Total: 17.59 kcal Atomic # 6 Polarization: -16.01 SS G_CDS: 4.80 Total: -11.21 kcal Atomic # 7 Polarization: -79.66 SS G_CDS: -4.45 Total: -84.11 kcal Atomic # 8 Polarization: -40.10 SS G_CDS: -0.09 Total: -40.19 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Atomic # 16 Polarization: -8.34 SS G_CDS: -1.16 Total: -9.50 kcal Total: -82.55 0.52 -82.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281227739.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.210 kcal (2) G-P(sol) polarization free energy of solvation -82.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds