Wall clock time and date at job start Tue Mar 31 2020 22:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86804 * 120.00028 * 2 1 4 4 H 1.48503 * 109.46847 * 270.00031 * 3 2 1 5 5 H 1.48497 * 109.47193 * 30.00221 * 3 2 1 6 6 H 1.48495 * 109.46864 * 150.00246 * 3 2 1 7 7 C 1.38808 * 119.99843 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00327 * 164.51340 * 7 2 1 9 9 N 1.36938 * 120.00072 * 344.51810 * 7 2 1 10 10 C 1.47006 * 121.37325 * 335.96756 * 9 7 2 11 11 C 1.50320 * 109.16690 * 222.97478 * 10 9 7 12 12 C 1.29464 * 123.65260 * 349.01814 * 11 10 9 13 13 C 1.50695 * 117.69590 * 180.86100 * 12 11 10 14 14 N 1.46499 * 109.47106 * 95.00231 * 13 12 11 15 15 C 1.34775 * 119.99975 * 179.97438 * 14 13 12 16 16 O 1.21280 * 119.99850 * 0.02562 * 15 14 13 17 17 C 1.50701 * 120.00165 * 179.97438 * 15 14 13 18 18 C 1.50695 * 109.47296 * 180.02562 * 17 15 14 19 19 C 1.33995 * 124.92282 * 89.72208 * 18 17 15 20 20 C 1.46788 * 106.18423 * 179.89646 * 19 18 17 21 21 C 1.39404 * 134.37221 * 180.11455 * 20 19 18 22 22 C 1.36732 * 119.71718 * 180.26538 * 21 20 19 23 23 C 1.38741 * 120.42039 * 0.02562 * 22 21 20 24 24 C 1.37851 * 120.68313 * 359.97438 * 23 22 21 25 25 C 1.38938 * 119.81714 * 359.97438 * 24 23 22 26 26 O 1.34448 * 124.92081 * 270.02692 * 18 17 15 27 27 C 1.49971 * 124.60715 * 1.14571 * 12 11 10 28 28 C 1.47337 * 121.37748 * 155.99396 * 9 7 2 29 29 H 0.97005 * 119.99413 * 359.97438 * 1 2 3 30 30 H 1.08989 * 109.52296 * 103.06700 * 10 9 7 31 31 H 1.08999 * 109.52175 * 342.87854 * 10 9 7 32 32 H 1.07997 * 118.18145 * 169.00371 * 11 10 9 33 33 H 1.09000 * 109.47229 * 335.00250 * 13 12 11 34 34 H 1.09003 * 109.46983 * 215.00288 * 13 12 11 35 35 H 0.96998 * 120.00134 * 0.02562 * 14 13 12 36 36 H 1.09006 * 109.47070 * 300.00896 * 17 15 14 37 37 H 1.09000 * 109.46821 * 60.00348 * 17 15 14 38 38 H 1.07991 * 126.90575 * 0.02786 * 19 18 17 39 39 H 1.07997 * 120.13795 * 0.25130 * 21 20 19 40 40 H 1.08003 * 119.78787 * 179.97438 * 22 21 20 41 41 H 1.07996 * 119.66055 * 180.02562 * 23 22 21 42 42 H 1.07999 * 120.08892 * 179.97438 * 24 23 22 43 43 H 1.09002 * 109.31535 * 101.00923 * 27 12 11 44 44 H 1.08994 * 109.31193 * 220.43580 * 27 12 11 45 45 H 1.08998 * 109.77881 * 237.78588 * 28 9 7 46 46 H 1.09004 * 109.77780 * 358.59881 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0609 -1.2191 -0.2503 9 7 1.3628 -2.3667 0.3155 10 6 0.1444 -2.3660 1.1380 11 6 0.2246 -3.4839 2.1398 12 6 1.1203 -4.4179 2.1024 13 6 1.0638 -5.4854 3.1645 14 7 0.3200 -6.6408 2.6565 15 6 0.1414 -7.7240 3.4383 16 8 0.5961 -7.7421 4.5625 17 6 -0.6242 -8.9123 2.9160 18 6 -0.6806 -9.9799 3.9780 19 6 -1.6402 -10.0879 4.9070 20 6 -1.2940 -11.2611 5.7184 21 6 -1.8764 -11.8938 6.8156 22 6 -1.2795 -12.9987 7.3564 23 6 -0.0989 -13.4926 6.8205 24 6 0.4916 -12.8802 5.7359 25 6 -0.0991 -11.7569 5.1705 26 8 0.2278 -10.9587 4.1344 27 6 2.2138 -4.5089 1.0801 28 6 1.8589 -3.6720 -0.1543 29 1 -0.4849 0.8401 0.0004 30 1 -0.7265 -2.5114 0.4991 31 1 0.0586 -1.4136 1.6612 32 1 -0.5054 -3.5092 2.9353 33 1 0.5636 -5.0917 4.0492 34 1 2.0767 -5.7918 3.4259 35 1 -0.0433 -6.6265 1.7573 36 1 -1.6373 -8.6057 2.6552 37 1 -0.1246 -9.3059 2.0308 38 1 -2.4972 -9.4428 5.0321 39 1 -2.7950 -11.5128 7.2367 40 1 -1.7295 -13.4896 8.2067 41 1 0.3618 -14.3663 7.2572 42 1 1.4108 -13.2725 5.3267 43 1 3.1441 -4.1420 1.5136 44 1 2.3436 -5.5494 0.7828 45 1 1.0845 -4.1738 -0.7346 46 1 2.7475 -3.5293 -0.7692 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284938361.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:38 Heat of formation + Delta-G solvation = 32.199911 kcal Electronic energy + Delta-G solvation = -27608.875045 eV Core-core repulsion = 23658.784905 eV Total energy + Delta-G solvation = -3950.090141 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.69986 -39.77739 -38.15351 -37.78139 -35.02642 -33.59748 -32.96452 -31.76898 -30.84674 -30.67154 -29.77192 -28.07837 -26.57859 -24.21862 -23.24575 -22.79579 -22.20235 -21.53457 -21.10463 -20.49799 -17.88085 -17.61560 -17.47341 -17.18108 -16.28180 -16.12575 -15.71391 -15.48918 -15.33982 -15.02029 -14.41994 -14.11857 -13.99517 -13.84311 -13.73925 -13.40973 -13.35371 -13.25797 -12.87107 -12.53494 -12.49218 -12.27467 -12.12768 -11.94142 -11.61250 -11.40622 -11.20372 -10.95509 -10.75912 -10.46491 -10.40496 -10.36300 -10.05151 -9.87388 -9.65063 -9.06528 -8.87969 -8.72781 -8.40145 -8.11315 -6.79436 -5.84453 -3.23152 0.62657 1.10402 2.01586 2.37738 2.51310 2.59868 3.35212 3.42426 3.44409 3.44866 3.50207 4.01193 4.39072 4.45807 4.62932 4.65959 4.74847 4.83264 4.85371 4.97043 5.08192 5.12683 5.17910 5.30009 5.35411 5.44147 5.53094 5.58597 5.76928 5.87887 5.93880 5.97706 6.01901 6.11228 6.15140 6.17690 6.27400 6.36476 6.39151 6.46747 6.67942 6.81567 6.94376 7.10555 7.19833 7.26365 7.46248 7.67899 7.77248 8.11851 8.33355 9.14864 9.77586 10.35188 11.26075 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.038672 B = 0.001665 C = 0.001645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.873338 B =16813.602978 C =17021.112681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.001 4.001 3 Si 0.904 3.096 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.247 4.247 8 H 0.069 0.931 9 N -0.595 5.595 10 C 0.193 3.807 11 C -0.123 4.123 12 C -0.167 4.167 13 C 0.158 3.842 14 N -0.718 5.718 15 C 0.510 3.490 16 O -0.534 6.534 17 C -0.070 4.070 18 C 0.059 3.941 19 C -0.194 4.194 20 C -0.127 4.127 21 C -0.071 4.071 22 C -0.138 4.138 23 C -0.097 4.097 24 C -0.107 4.107 25 C 0.056 3.944 26 O -0.188 6.188 27 C -0.090 4.090 28 C 0.144 3.856 29 H 0.254 0.746 30 H 0.042 0.958 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.403 0.597 36 H 0.129 0.871 37 H 0.117 0.883 38 H 0.158 0.842 39 H 0.127 0.873 40 H 0.128 0.872 41 H 0.134 0.866 42 H 0.131 0.869 43 H 0.064 0.936 44 H 0.053 0.947 45 H 0.024 0.976 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.646 -25.164 9.180 27.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.199 4.199 3 Si 0.734 3.266 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.376 4.376 8 H 0.086 0.914 9 N -0.318 5.318 10 C 0.068 3.932 11 C -0.143 4.143 12 C -0.168 4.168 13 C 0.035 3.965 14 N -0.369 5.369 15 C 0.295 3.705 16 O -0.411 6.411 17 C -0.110 4.110 18 C 0.011 3.989 19 C -0.213 4.213 20 C -0.128 4.128 21 C -0.090 4.090 22 C -0.157 4.157 23 C -0.115 4.115 24 C -0.125 4.125 25 C 0.008 3.992 26 O -0.090 6.090 27 C -0.129 4.129 28 C 0.017 3.983 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.238 0.762 36 H 0.147 0.853 37 H 0.135 0.865 38 H 0.175 0.825 39 H 0.145 0.855 40 H 0.146 0.854 41 H 0.152 0.848 42 H 0.149 0.851 43 H 0.083 0.917 44 H 0.071 0.929 45 H 0.042 0.958 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.158 -25.025 9.827 27.205 hybrid contribution 0.097 0.998 -0.270 1.038 sum -4.061 -24.027 9.557 26.175 Atomic orbital electron populations 1.70006 1.05187 1.25560 1.54753 1.24984 0.95399 0.98315 1.01168 0.86259 0.79093 0.83525 0.77698 1.21404 1.21546 1.20526 1.19173 0.92247 0.84345 1.41851 0.91369 1.44122 1.29218 1.01219 1.57264 1.19767 0.88833 0.94793 0.89771 1.23302 0.95805 0.96617 0.98612 1.20495 1.00024 0.97247 0.99056 1.20478 0.96129 0.84276 0.95583 1.46142 1.56591 1.16097 1.18099 1.20270 0.80691 0.83637 0.85876 1.90760 1.49642 1.81467 1.19205 1.20272 1.04143 0.90072 0.96476 1.21377 0.88705 0.90162 0.98615 1.22175 1.02635 0.99501 0.96967 1.19938 0.96628 0.97379 0.98827 1.20298 0.99613 0.94985 0.94056 1.20768 0.96559 0.97270 1.01061 1.20913 0.95716 0.99723 0.95168 1.19958 1.01242 0.93790 0.97533 1.19605 0.95669 0.94401 0.89479 1.83924 1.45951 1.34901 1.44212 1.20793 0.96577 0.99036 0.96526 1.20993 0.97358 0.87189 0.92742 0.93583 0.94043 0.88856 0.88764 0.91577 0.91537 0.76219 0.85319 0.86519 0.82462 0.85537 0.85400 0.84838 0.85079 0.91711 0.92894 0.95839 0.92448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.66 11.08 55.49 0.61 -25.05 16 2 C 0.00 -0.02 5.01 -17.43 -0.09 -0.11 16 3 Si 0.90 21.39 29.58 -169.99 -5.03 16.37 16 4 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.25 -6.62 9.71 -15.06 -0.15 -6.77 16 8 H 0.07 1.80 7.88 -52.48 -0.41 1.38 16 9 N -0.60 -14.40 3.01 -173.57 -0.52 -14.92 16 10 C 0.19 4.41 5.23 -5.10 -0.03 4.38 16 11 C -0.12 -2.22 9.47 -35.78 -0.34 -2.56 16 12 C -0.17 -2.73 5.22 -100.99 -0.53 -3.25 16 13 C 0.16 2.26 5.66 -5.20 -0.03 2.23 16 14 N -0.72 -8.40 5.55 -61.47 -0.34 -8.74 16 15 C 0.51 6.36 7.82 -10.99 -0.09 6.28 16 16 O -0.53 -9.14 16.03 5.56 0.09 -9.06 16 17 C -0.07 -0.60 6.20 -29.04 -0.18 -0.78 16 18 C 0.06 0.69 5.72 -35.80 -0.20 0.48 16 19 C -0.19 -2.17 11.01 -37.62 -0.41 -2.59 16 20 C -0.13 -1.49 6.40 -105.16 -0.67 -2.16 16 21 C -0.07 -0.67 10.05 -39.69 -0.40 -1.07 16 22 C -0.14 -1.09 9.98 -39.94 -0.40 -1.48 16 23 C -0.10 -0.76 10.01 -39.54 -0.40 -1.15 16 24 C -0.11 -1.03 10.07 -39.46 -0.40 -1.43 16 25 C 0.06 0.69 7.42 -38.47 -0.29 0.40 16 26 O -0.19 -2.48 10.58 3.90 0.04 -2.44 16 27 C -0.09 -1.50 5.95 -28.08 -0.17 -1.67 16 28 C 0.14 2.84 6.59 -3.43 -0.02 2.82 16 29 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 30 H 0.04 1.00 8.14 -51.94 -0.42 0.58 16 31 H 0.09 2.40 6.41 -51.93 -0.33 2.06 16 32 H 0.09 1.53 7.73 -52.49 -0.41 1.12 16 33 H 0.07 0.99 7.78 -51.93 -0.40 0.59 16 34 H 0.07 1.00 8.11 -51.93 -0.42 0.58 16 35 H 0.40 3.82 8.46 -40.82 -0.35 3.48 16 36 H 0.13 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.12 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.16 1.40 8.06 -52.49 -0.42 0.98 16 39 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 40 H 0.13 0.66 8.06 -52.48 -0.42 0.23 16 41 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 42 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 43 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.06 1.11 7.96 -51.93 -0.41 0.70 16 LS Contribution 386.45 15.07 5.82 5.82 Total: -1.00 -33.57 386.45 -10.62 -44.19 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -6.52 Total: 2.26 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: -4.78 Total: -8.43 kcal Atomic # 7 Polarization: -48.46 SS G_CDS: -0.25 Total: -48.71 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.13 Total: -11.50 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.57 -10.62 -44.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284938361.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.391 kcal (2) G-P(sol) polarization free energy of solvation -33.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds