Wall clock time and date at job start Tue Mar 31 2020 22:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86804 * 120.00028 * 2 1 4 4 H 1.48503 * 109.46847 * 270.00031 * 3 2 1 5 5 H 1.48497 * 109.47193 * 30.00221 * 3 2 1 6 6 H 1.48495 * 109.46864 * 150.00246 * 3 2 1 7 7 C 1.38808 * 119.99843 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00327 * 164.51340 * 7 2 1 9 9 N 1.36938 * 120.00072 * 344.51810 * 7 2 1 10 10 C 1.47006 * 121.37325 * 335.96756 * 9 7 2 11 11 C 1.50320 * 109.16690 * 222.97478 * 10 9 7 12 12 C 1.29464 * 123.65260 * 349.01814 * 11 10 9 13 13 C 1.50695 * 117.69590 * 180.86100 * 12 11 10 14 14 N 1.46499 * 109.47106 * 95.00231 * 13 12 11 15 15 C 1.34775 * 119.99975 * 179.97438 * 14 13 12 16 16 O 1.21280 * 119.99850 * 0.02562 * 15 14 13 17 17 C 1.50701 * 120.00165 * 179.97438 * 15 14 13 18 18 C 1.50695 * 109.47296 * 180.02562 * 17 15 14 19 19 C 1.33995 * 124.92282 * 89.72208 * 18 17 15 20 20 C 1.46788 * 106.18423 * 179.89646 * 19 18 17 21 21 C 1.39404 * 134.37221 * 180.11455 * 20 19 18 22 22 C 1.36732 * 119.71718 * 180.26538 * 21 20 19 23 23 C 1.38741 * 120.42039 * 0.02562 * 22 21 20 24 24 C 1.37851 * 120.68313 * 359.97438 * 23 22 21 25 25 C 1.38938 * 119.81714 * 359.97438 * 24 23 22 26 26 O 1.34448 * 124.92081 * 270.02692 * 18 17 15 27 27 C 1.49971 * 124.60715 * 1.14571 * 12 11 10 28 28 C 1.47337 * 121.37748 * 155.99396 * 9 7 2 29 29 H 0.97005 * 119.99413 * 359.97438 * 1 2 3 30 30 H 1.08989 * 109.52296 * 103.06700 * 10 9 7 31 31 H 1.08999 * 109.52175 * 342.87854 * 10 9 7 32 32 H 1.07997 * 118.18145 * 169.00371 * 11 10 9 33 33 H 1.09000 * 109.47229 * 335.00250 * 13 12 11 34 34 H 1.09003 * 109.46983 * 215.00288 * 13 12 11 35 35 H 0.96998 * 120.00134 * 0.02562 * 14 13 12 36 36 H 1.09006 * 109.47070 * 300.00896 * 17 15 14 37 37 H 1.09000 * 109.46821 * 60.00348 * 17 15 14 38 38 H 1.07991 * 126.90575 * 0.02786 * 19 18 17 39 39 H 1.07997 * 120.13795 * 0.25130 * 21 20 19 40 40 H 1.08003 * 119.78787 * 179.97438 * 22 21 20 41 41 H 1.07996 * 119.66055 * 180.02562 * 23 22 21 42 42 H 1.07999 * 120.08892 * 179.97438 * 24 23 22 43 43 H 1.09002 * 109.31535 * 101.00923 * 27 12 11 44 44 H 1.08994 * 109.31193 * 220.43580 * 27 12 11 45 45 H 1.08998 * 109.77881 * 237.78588 * 28 9 7 46 46 H 1.09004 * 109.77780 * 358.59881 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0609 -1.2191 -0.2503 9 7 1.3628 -2.3667 0.3155 10 6 0.1444 -2.3660 1.1380 11 6 0.2246 -3.4839 2.1398 12 6 1.1203 -4.4179 2.1024 13 6 1.0638 -5.4854 3.1645 14 7 0.3200 -6.6408 2.6565 15 6 0.1414 -7.7240 3.4383 16 8 0.5961 -7.7421 4.5625 17 6 -0.6242 -8.9123 2.9160 18 6 -0.6806 -9.9799 3.9780 19 6 -1.6402 -10.0879 4.9070 20 6 -1.2940 -11.2611 5.7184 21 6 -1.8764 -11.8938 6.8156 22 6 -1.2795 -12.9987 7.3564 23 6 -0.0989 -13.4926 6.8205 24 6 0.4916 -12.8802 5.7359 25 6 -0.0991 -11.7569 5.1705 26 8 0.2278 -10.9587 4.1344 27 6 2.2138 -4.5089 1.0801 28 6 1.8589 -3.6720 -0.1543 29 1 -0.4849 0.8401 0.0004 30 1 -0.7265 -2.5114 0.4991 31 1 0.0586 -1.4136 1.6612 32 1 -0.5054 -3.5092 2.9353 33 1 0.5636 -5.0917 4.0492 34 1 2.0767 -5.7918 3.4259 35 1 -0.0433 -6.6265 1.7573 36 1 -1.6373 -8.6057 2.6552 37 1 -0.1246 -9.3059 2.0308 38 1 -2.4972 -9.4428 5.0321 39 1 -2.7950 -11.5128 7.2367 40 1 -1.7295 -13.4896 8.2067 41 1 0.3618 -14.3663 7.2572 42 1 1.4108 -13.2725 5.3267 43 1 3.1441 -4.1420 1.5136 44 1 2.3436 -5.5494 0.7828 45 1 1.0845 -4.1738 -0.7346 46 1 2.7475 -3.5293 -0.7692 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284938361.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:37 Heat of formation + Delta-G solvation = 12.352444 kcal Electronic energy + Delta-G solvation = -27609.735696 eV Core-core repulsion = 23658.784905 eV Total energy + Delta-G solvation = -3950.950791 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.46626 -40.83253 -39.34825 -38.78146 -36.43875 -34.59989 -34.31562 -32.84569 -32.20076 -31.40503 -31.35292 -29.12065 -27.91356 -25.79258 -24.39693 -23.98122 -23.07386 -22.72109 -22.26141 -21.42245 -19.51009 -18.64628 -18.33645 -17.94805 -17.40986 -17.17853 -16.98791 -16.79217 -16.44508 -16.13497 -15.69576 -15.40904 -15.20574 -15.07991 -14.78532 -14.66792 -14.50074 -14.06170 -13.98981 -13.80478 -13.61071 -13.26787 -13.21840 -13.10952 -12.88711 -12.79223 -12.63902 -12.57673 -12.24371 -12.10390 -11.86263 -11.70560 -11.32872 -11.23107 -10.99170 -10.68208 -10.13849 -9.66591 -9.59044 -9.12228 -8.74209 -7.88734 -5.29338 -0.07915 0.39401 1.10593 1.35516 1.46481 1.48519 1.55671 1.57449 1.70050 2.47725 2.51160 2.77144 3.28765 3.29655 3.62982 3.69660 3.80829 3.90980 3.96876 4.05198 4.12956 4.18514 4.22310 4.37906 4.44071 4.49620 4.54367 4.57598 4.65456 4.74734 4.76458 4.84468 4.92502 4.94066 5.11190 5.22543 5.23713 5.33661 5.34649 5.41593 5.47234 5.49302 5.50570 5.61639 5.75350 5.77207 6.16955 6.18887 6.34155 6.52070 7.13963 7.18768 7.84228 8.37296 9.19733 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.038672 B = 0.001665 C = 0.001645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.873338 B =16813.602978 C =17021.112681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.053 4.053 3 Si 0.966 3.034 4 H -0.284 1.284 5 H -0.293 1.293 6 H -0.273 1.273 7 C -0.257 4.257 8 H 0.069 0.931 9 N -0.615 5.615 10 C 0.204 3.796 11 C -0.140 4.140 12 C -0.139 4.139 13 C 0.168 3.832 14 N -0.707 5.707 15 C 0.513 3.487 16 O -0.585 6.585 17 C -0.060 4.060 18 C 0.040 3.960 19 C -0.204 4.204 20 C -0.155 4.155 21 C -0.085 4.085 22 C -0.136 4.136 23 C -0.091 4.091 24 C -0.124 4.124 25 C 0.022 3.978 26 O -0.210 6.210 27 C -0.085 4.085 28 C 0.138 3.862 29 H 0.250 0.750 30 H 0.017 0.983 31 H 0.056 0.944 32 H 0.113 0.887 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.418 0.582 36 H 0.166 0.834 37 H 0.143 0.857 38 H 0.174 0.826 39 H 0.144 0.856 40 H 0.160 0.840 41 H 0.167 0.833 42 H 0.144 0.856 43 H 0.060 0.940 44 H 0.089 0.911 45 H 0.032 0.968 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.445 -27.490 9.845 29.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.248 4.248 3 Si 0.794 3.206 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.198 1.198 7 C -0.387 4.387 8 H 0.087 0.913 9 N -0.340 5.340 10 C 0.079 3.921 11 C -0.160 4.160 12 C -0.140 4.140 13 C 0.044 3.956 14 N -0.359 5.359 15 C 0.300 3.700 16 O -0.465 6.465 17 C -0.099 4.099 18 C -0.008 4.008 19 C -0.223 4.223 20 C -0.155 4.155 21 C -0.103 4.103 22 C -0.154 4.154 23 C -0.109 4.109 24 C -0.142 4.142 25 C -0.025 4.025 26 O -0.113 6.113 27 C -0.123 4.123 28 C 0.013 3.987 29 H 0.059 0.941 30 H 0.035 0.965 31 H 0.074 0.926 32 H 0.131 0.869 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.255 0.745 36 H 0.183 0.817 37 H 0.161 0.839 38 H 0.192 0.808 39 H 0.162 0.838 40 H 0.177 0.823 41 H 0.185 0.815 42 H 0.162 0.838 43 H 0.079 0.921 44 H 0.108 0.892 45 H 0.050 0.950 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.956 -27.383 10.459 29.578 hybrid contribution 0.068 1.580 -0.442 1.642 sum -3.888 -25.803 10.017 27.951 Atomic orbital electron populations 1.70159 1.06425 1.25758 1.56153 1.25705 0.96160 1.01226 1.01701 0.85296 0.77966 0.79762 0.77555 1.21080 1.21978 1.19839 1.19499 0.92543 0.85698 1.41009 0.91320 1.44404 1.29436 1.02147 1.57966 1.19417 0.87765 0.94937 0.90000 1.22954 0.98168 0.96024 0.98859 1.20582 0.98279 0.96627 0.98489 1.20204 0.96434 0.84401 0.94519 1.45939 1.56047 1.15173 1.18716 1.20866 0.79885 0.84245 0.85013 1.90746 1.51791 1.82423 1.21505 1.20395 1.05825 0.87490 0.96162 1.21899 0.88651 0.90595 0.99657 1.22531 1.03246 0.99695 0.96867 1.20318 0.97124 0.98113 0.99995 1.20654 1.00435 0.95526 0.93645 1.21218 0.96281 0.96501 1.01393 1.21385 0.95405 1.00077 0.94023 1.20349 1.02034 0.93513 0.98287 1.20136 0.96759 0.95556 0.90065 1.83877 1.46866 1.35640 1.44885 1.20731 0.96169 1.00429 0.94987 1.21189 0.97426 0.85754 0.94318 0.94128 0.96544 0.92608 0.86882 0.92109 0.91734 0.74519 0.81671 0.83892 0.80829 0.83827 0.82274 0.81525 0.83829 0.92132 0.89222 0.95008 0.92400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.57 11.08 21.65 0.24 -54.33 16 2 C -0.05 -2.93 5.01 84.86 0.43 -2.51 16 3 Si 0.97 44.65 29.58 68.60 2.03 46.68 16 4 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 5 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 6 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 7 C -0.26 -13.98 9.71 84.03 0.82 -13.16 16 8 H 0.07 3.63 7.88 -2.91 -0.02 3.61 16 9 N -0.62 -30.06 3.01 -703.04 -2.11 -32.17 16 10 C 0.20 9.55 5.23 85.42 0.45 9.99 16 11 C -0.14 -4.98 9.47 27.10 0.26 -4.72 16 12 C -0.14 -4.27 5.22 -15.15 -0.08 -4.35 16 13 C 0.17 4.45 5.66 85.63 0.48 4.93 16 14 N -0.71 -14.67 5.55 -466.80 -2.59 -17.26 16 15 C 0.51 11.83 7.82 87.66 0.69 12.51 16 16 O -0.58 -19.68 16.03 -3.03 -0.05 -19.73 16 17 C -0.06 -0.89 6.20 29.10 0.18 -0.71 16 18 C 0.04 0.89 5.72 24.72 0.14 1.03 16 19 C -0.20 -4.50 11.01 23.54 0.26 -4.24 16 20 C -0.15 -3.60 6.40 -20.21 -0.13 -3.73 16 21 C -0.08 -1.48 10.05 22.20 0.22 -1.26 16 22 C -0.14 -1.82 9.98 22.04 0.22 -1.60 16 23 C -0.09 -1.22 10.01 22.30 0.22 -1.00 16 24 C -0.12 -2.30 10.07 22.35 0.23 -2.08 16 25 C 0.02 0.54 7.42 22.99 0.17 0.71 16 26 O -0.21 -5.59 10.58 -8.97 -0.09 -5.69 16 27 C -0.08 -2.61 5.95 29.72 0.18 -2.43 16 28 C 0.14 5.31 6.59 86.32 0.57 5.87 16 29 H 0.25 14.11 8.31 -92.70 -0.77 13.34 16 30 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.06 3.00 6.41 -2.39 -0.02 2.98 16 32 H 0.11 3.58 7.73 -2.91 -0.02 3.56 16 33 H 0.06 1.73 7.78 -2.39 -0.02 1.71 16 34 H 0.06 1.79 8.11 -2.39 -0.02 1.78 16 35 H 0.42 6.47 8.46 -92.71 -0.78 5.68 16 36 H 0.17 1.20 8.14 -2.38 -0.02 1.18 16 37 H 0.14 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.17 2.94 8.06 -2.91 -0.02 2.91 16 39 H 0.14 1.86 8.06 -2.91 -0.02 1.83 16 40 H 0.16 1.06 8.06 -2.91 -0.02 1.04 16 41 H 0.17 1.02 8.06 -2.91 -0.02 1.00 16 42 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 43 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 45 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 46 H 0.06 2.18 7.96 -2.39 -0.02 2.16 16 Total: -1.00 -76.45 386.45 2.93 -73.52 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: 0.21 Total: 15.70 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: 5.29 Total: -6.72 kcal Atomic # 7 Polarization: -99.30 SS G_CDS: -4.46 Total: -103.76 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -0.14 Total: -25.41 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -76.45 2.93 -73.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284938361.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.872 kcal (2) G-P(sol) polarization free energy of solvation -76.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds