Wall clock time and date at job start Wed Apr 1 2020 00:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86796 * 119.99741 * 2 1 4 4 H 1.48498 * 109.47157 * 240.00399 * 3 2 1 5 5 H 1.48496 * 109.47271 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46802 * 120.00663 * 3 2 1 7 7 C 1.38799 * 119.99674 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99356 * 179.97438 * 7 2 1 9 9 S 1.76196 * 120.00626 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00314 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47151 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99803 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99675 * 180.27780 * 11 10 9 14 14 C 1.47021 * 125.65024 * 359.41182 * 13 11 10 15 15 C 1.54337 * 107.26261 * 178.85492 * 14 13 11 16 16 C 1.55155 * 103.02070 * 338.14065 * 15 14 13 17 17 H 1.08998 * 111.00779 * 277.23178 * 16 15 14 18 18 N 1.46504 * 111.03569 * 153.40104 * 16 15 14 19 19 C 1.34775 * 120.00134 * 161.33032 * 18 16 15 20 20 O 1.21284 * 119.99909 * 0.02562 * 19 18 16 21 21 C 1.50697 * 119.99959 * 179.97438 * 19 18 16 22 22 C 1.52996 * 109.47092 * 180.02562 * 21 19 18 23 23 C 1.53006 * 109.47196 * 180.02562 * 22 21 19 24 24 C 1.53002 * 109.47164 * 180.02562 * 23 22 21 25 25 C 1.53004 * 117.49669 * 243.61784 * 24 23 22 26 26 C 1.53002 * 117.49693 * 174.99688 * 24 23 22 27 27 C 1.47426 * 125.64505 * 179.72939 * 13 11 10 28 28 H 0.97003 * 120.00297 * 359.97438 * 1 2 3 29 29 H 1.09009 * 109.46810 * 59.99569 * 10 9 7 30 30 H 1.08998 * 109.46824 * 300.00078 * 10 9 7 31 31 H 1.08996 * 109.88140 * 298.39855 * 14 13 11 32 32 H 1.09001 * 109.87951 * 59.56582 * 14 13 11 33 33 H 1.09005 * 110.84402 * 219.67330 * 15 14 13 34 34 H 1.08996 * 110.51583 * 96.45968 * 15 14 13 35 35 H 0.97002 * 119.99710 * 341.33212 * 18 16 15 36 36 H 1.09001 * 109.47836 * 300.00740 * 21 19 18 37 37 H 1.09006 * 109.46573 * 60.00307 * 21 19 18 38 38 H 1.09004 * 109.46999 * 300.00148 * 22 21 19 39 39 H 1.08997 * 109.47173 * 60.00368 * 22 21 19 40 40 H 1.09004 * 109.46585 * 299.99565 * 23 22 21 41 41 H 1.08997 * 109.47441 * 59.99696 * 23 22 21 42 42 H 1.08995 * 115.55076 * 29.32097 * 24 23 22 43 43 H 1.09006 * 117.49374 * 0.02562 * 25 24 23 44 44 H 1.08992 * 117.49803 * 145.01675 * 25 24 23 45 45 H 1.08997 * 117.49487 * 214.97085 * 26 24 23 46 46 H 1.08996 * 117.50103 * 359.97319 * 26 24 23 47 47 H 1.09003 * 110.36374 * 322.92215 * 27 13 11 48 48 H 1.09000 * 110.37185 * 85.13705 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0021 11 6 1.9874 -5.3028 -0.0017 12 8 0.7911 -5.5023 0.0000 13 7 2.8442 -6.3431 0.0029 14 6 4.3112 -6.2451 -0.0044 15 6 4.8665 -7.6846 0.0343 16 6 3.6851 -8.4993 0.6239 17 1 3.6713 -8.4360 1.7119 18 7 3.7371 -9.8954 0.1827 19 6 3.0521 -10.8409 0.8559 20 8 2.3922 -10.5359 1.8268 21 6 3.1052 -12.2768 0.4017 22 6 2.2468 -13.1376 1.3307 23 6 2.3011 -14.5956 0.8699 24 6 1.4421 -15.4563 1.7985 25 6 2.1523 -16.5335 2.6209 26 6 1.2710 -16.9328 1.4356 27 6 2.4656 -7.7679 0.0095 28 1 -0.4851 0.8400 0.0004 29 1 3.1252 -3.7317 0.8875 30 1 3.1238 -3.7309 -0.8925 31 1 4.6445 -5.7413 -0.9117 32 1 4.6503 -5.6951 0.8735 33 1 5.7397 -7.7461 0.6839 34 1 5.1080 -8.0280 -0.9716 35 1 4.2646 -10.1392 -0.5940 36 1 2.7237 -12.3502 -0.6167 37 1 4.1365 -12.6287 0.4296 38 1 2.6280 -13.0643 2.3493 39 1 1.2156 -12.7855 1.3024 40 1 1.9201 -14.6691 -0.1487 41 1 3.3323 -14.9475 0.8984 42 1 0.5938 -14.9494 2.2582 43 1 3.2315 -16.6286 2.5007 44 1 1.7712 -16.7353 3.6219 45 1 0.3102 -17.3973 1.6570 46 1 1.7700 -17.2908 0.5352 47 1 1.5804 -7.9223 0.6265 48 1 2.2843 -8.1171 -1.0070 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001295003579.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:31 Heat of formation + Delta-G solvation = -62.613085 kcal Electronic energy + Delta-G solvation = -25816.547126 eV Core-core repulsion = 21997.789537 eV Total energy + Delta-G solvation = -3818.757589 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.47114 -39.40729 -38.13227 -37.27475 -34.45679 -34.17188 -32.42090 -31.14357 -29.71054 -28.86187 -27.42820 -25.47796 -23.78653 -22.91635 -22.68222 -21.30196 -20.90148 -20.58004 -19.35492 -17.82102 -17.36217 -16.92477 -16.54819 -16.30360 -15.79226 -15.45260 -15.16842 -14.79706 -14.72402 -14.52861 -14.18545 -13.99217 -13.75642 -13.61817 -13.18455 -12.79552 -12.64828 -12.60165 -12.50271 -12.13941 -11.99873 -11.95580 -11.87600 -11.71514 -11.48165 -11.24507 -11.14939 -11.03517 -11.03104 -10.77007 -10.64991 -10.29377 -10.11920 -9.82698 -9.55821 -9.34306 -9.05112 -8.52768 -8.22847 -6.49566 -6.20474 -3.91467 2.32869 2.59849 3.02952 3.07678 3.23981 3.27190 3.30178 3.37409 3.62664 4.06916 4.16690 4.21199 4.34131 4.37992 4.48863 4.52654 4.63265 4.66507 4.74600 4.88215 4.95216 5.05920 5.08175 5.14362 5.14465 5.21431 5.23344 5.34204 5.37027 5.37878 5.47398 5.52166 5.59916 5.65638 5.68086 5.73637 5.77981 5.82837 5.85079 5.92878 5.99679 6.08855 6.13766 6.40317 7.12699 7.59617 7.63825 7.91371 8.35708 8.55021 9.24372 10.86910 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.031924 B = 0.001532 C = 0.001484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.869612 B =18268.907829 C =18868.947829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.146 4.146 11 C 0.549 3.451 12 O -0.512 6.512 13 N -0.626 5.626 14 C 0.104 3.896 15 C -0.136 4.136 16 C 0.132 3.868 17 H 0.105 0.895 18 N -0.723 5.723 19 C 0.511 3.489 20 O -0.531 6.531 21 C -0.140 4.140 22 C -0.103 4.103 23 C -0.089 4.089 24 C -0.153 4.153 25 C -0.182 4.182 26 C -0.183 4.183 27 C 0.099 3.901 28 H 0.269 0.731 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.402 0.598 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.106 0.894 43 H 0.093 0.907 44 H 0.092 0.908 45 H 0.092 0.908 46 H 0.093 0.907 47 H 0.083 0.917 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.434 -30.951 -0.870 33.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.297 4.297 11 C 0.337 3.663 12 O -0.386 6.386 13 N -0.365 5.365 14 C -0.020 4.020 15 C -0.174 4.174 16 C 0.026 3.974 17 H 0.123 0.877 18 N -0.376 5.376 19 C 0.298 3.702 20 O -0.406 6.406 21 C -0.180 4.180 22 C -0.141 4.141 23 C -0.126 4.126 24 C -0.171 4.171 25 C -0.219 4.219 26 C -0.220 4.220 27 C -0.026 4.026 28 H 0.079 0.921 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.108 0.892 34 H 0.101 0.899 35 H 0.237 0.763 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.124 0.876 43 H 0.111 0.889 44 H 0.110 0.890 45 H 0.111 0.889 46 H 0.111 0.889 47 H 0.102 0.898 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 10.931 -30.835 -0.150 32.716 hybrid contribution 2.329 1.179 -0.460 2.650 sum 13.260 -29.656 -0.610 32.491 Atomic orbital electron populations 1.70012 1.05958 1.27573 1.46710 1.24988 0.95019 0.98997 0.94515 0.86222 0.79236 0.81247 0.78781 1.19946 1.20798 1.19935 1.22817 0.94856 0.91622 1.59142 0.90978 1.85432 1.04902 0.96303 1.96718 1.23505 1.06499 0.94841 1.04824 1.20058 0.85678 0.85416 0.75130 1.90721 1.14932 1.85056 1.47888 1.48407 1.06441 1.05526 1.76082 1.21960 0.80656 0.96648 1.02711 1.22915 0.97818 0.94416 1.02265 1.22083 0.94752 0.80047 1.00493 0.87730 1.45919 1.51495 1.07129 1.33032 1.20834 0.78602 0.87755 0.83020 1.90761 1.40363 1.82737 1.26786 1.21697 1.02910 0.91533 1.01854 1.21335 1.00682 0.92853 0.99209 1.21197 0.99012 0.94034 0.98374 1.22357 1.01954 0.90531 1.02244 1.23036 0.98719 1.03935 0.96186 1.22965 1.01650 0.97828 0.99581 1.22472 0.98339 0.80758 1.00989 0.92117 0.89213 0.89267 0.90770 0.90814 0.89186 0.89930 0.76336 0.88739 0.88881 0.90986 0.90911 0.91484 0.91820 0.87628 0.88861 0.88951 0.88914 0.88879 0.89835 0.91608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.35 13.22 55.49 0.73 -25.62 16 2 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 3 Si 0.92 21.45 29.55 -169.99 -5.02 16.43 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 7 C -0.54 -15.37 9.50 30.94 0.29 -15.08 16 8 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 9 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 10 C -0.15 -3.04 5.35 36.01 0.19 -2.85 16 11 C 0.55 10.95 7.87 -10.98 -0.09 10.87 16 12 O -0.51 -12.41 16.12 5.55 0.09 -12.32 16 13 N -0.63 -9.25 3.33 -170.51 -0.57 -9.82 16 14 C 0.10 1.05 6.49 -3.06 -0.02 1.03 16 15 C -0.14 -0.91 6.57 -24.89 -0.16 -1.07 16 16 C 0.13 1.22 3.32 -65.78 -0.22 1.01 16 17 H 0.10 1.17 7.73 -51.93 -0.40 0.77 16 18 N -0.72 -5.04 5.23 -51.73 -0.27 -5.31 16 19 C 0.51 4.60 7.83 -10.99 -0.09 4.51 16 20 O -0.53 -7.35 15.73 5.55 0.09 -7.27 16 21 C -0.14 -0.75 5.70 -27.89 -0.16 -0.90 16 22 C -0.10 -0.69 4.46 -26.73 -0.12 -0.81 16 23 C -0.09 -0.46 5.50 -26.73 -0.15 -0.61 16 24 C -0.15 -0.92 5.74 -90.62 -0.52 -1.44 16 25 C -0.18 -1.01 10.18 -26.73 -0.27 -1.29 16 26 C -0.18 -0.99 10.25 -26.73 -0.27 -1.26 16 27 C 0.10 1.29 6.60 -2.53 -0.02 1.27 16 28 H 0.27 7.60 8.31 -40.82 -0.34 7.27 16 29 H 0.09 1.73 8.14 -51.91 -0.42 1.30 16 30 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.40 8.00 -51.93 -0.42 -0.01 16 35 H 0.40 1.46 8.52 -40.82 -0.35 1.11 16 36 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 39 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 40 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 41 H 0.06 0.29 7.88 -51.93 -0.41 -0.12 16 42 H 0.11 0.70 8.07 -51.93 -0.42 0.28 16 43 H 0.09 0.47 8.03 -51.93 -0.42 0.05 16 44 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.08 1.34 8.04 -51.93 -0.42 0.92 16 48 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 412.19 15.07 6.21 6.21 Total: -1.00 -37.46 412.19 -10.93 -48.39 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -8.29 Total: -2.21 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: -1.69 Total: -4.60 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: -0.10 Total: -40.75 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: 0.18 Total: -19.59 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -37.46 -10.93 -48.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001295003579.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.221 kcal (2) G-P(sol) polarization free energy of solvation -37.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds