Wall clock time and date at job start Wed Apr 1 2020 00:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86799 * 120.00080 * 2 1 4 4 H 1.48501 * 109.46923 * 239.99818 * 3 2 1 5 5 H 1.48501 * 109.47380 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47281 * 119.99782 * 3 2 1 7 7 C 1.38796 * 119.99678 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99667 * 180.02562 * 7 2 1 9 9 S 1.76205 * 120.00062 * 359.97438 * 7 2 1 10 10 C 1.81004 * 99.99750 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.46759 * 180.02562 * 10 9 7 12 12 O 1.21286 * 120.00306 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00030 * 179.97438 * 11 10 9 14 14 C 1.46926 * 120.63336 * 180.02562 * 13 11 10 15 15 C 1.53191 * 108.89109 * 233.68039 * 14 13 11 16 16 C 1.53035 * 109.31327 * 305.29292 * 15 14 13 17 17 C 1.53007 * 109.46118 * 181.38770 * 16 15 14 18 18 C 1.50699 * 109.47144 * 174.99788 * 17 16 15 19 19 O 1.21280 * 120.00053 * 0.02562 * 18 17 16 20 20 N 1.34780 * 119.99846 * 179.97438 * 18 17 16 21 21 C 1.47015 * 125.64757 * 359.69758 * 20 18 17 22 22 C 1.54310 * 107.27768 * 180.96814 * 21 20 18 23 23 C 1.55157 * 102.86268 * 22.51898 * 22 21 20 24 24 C 1.47425 * 125.64904 * 179.97438 * 20 18 17 25 25 C 1.53038 * 109.54175 * 61.36680 * 16 15 14 26 26 C 1.47207 * 120.81118 * 0.14238 * 13 11 10 27 27 H 0.97001 * 119.99749 * 0.02562 * 1 2 3 28 28 H 1.08992 * 109.47317 * 60.00092 * 10 9 7 29 29 H 1.09000 * 109.47045 * 299.99517 * 10 9 7 30 30 H 1.09002 * 109.58861 * 113.82042 * 14 13 11 31 31 H 1.08996 * 109.58519 * 353.53933 * 14 13 11 32 32 H 1.09003 * 109.49975 * 65.24379 * 15 14 13 33 33 H 1.09000 * 109.49553 * 185.30642 * 15 14 13 34 34 H 1.09005 * 109.46002 * 301.35718 * 16 15 14 35 35 H 1.08996 * 109.46924 * 295.00300 * 17 16 15 36 36 H 1.09004 * 109.46756 * 54.99920 * 17 16 15 37 37 H 1.09008 * 109.88187 * 300.51002 * 21 20 18 38 38 H 1.09006 * 109.88705 * 61.67608 * 21 20 18 39 39 H 1.09011 * 110.92497 * 264.11123 * 22 21 20 40 40 H 1.08998 * 110.59743 * 140.78606 * 22 21 20 41 41 H 1.09001 * 111.00871 * 206.22888 * 23 22 21 42 42 H 1.09000 * 111.00134 * 82.38318 * 23 22 21 43 43 H 1.08996 * 110.36888 * 274.68037 * 24 20 18 44 44 H 1.09004 * 110.36234 * 36.89006 * 24 20 18 45 45 H 1.09002 * 109.49557 * 58.58503 * 25 16 15 46 46 H 1.09001 * 109.50153 * 178.64977 * 25 16 15 47 47 H 1.08996 * 109.53610 * 6.53286 * 26 13 11 48 48 H 1.09002 * 109.68003 * 246.22753 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7465 -0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2020 0.0010 9 16 1.1291 -2.7280 0.0019 10 6 2.5157 -3.8915 0.0029 11 6 1.9872 -5.3027 0.0036 12 8 0.7908 -5.5023 0.0038 13 7 2.8439 -6.3432 0.0039 14 6 2.3438 -7.7247 0.0039 15 6 2.9819 -8.4831 1.1719 16 6 4.5051 -8.3692 1.0776 17 6 5.1470 -9.1545 2.2232 18 6 6.6452 -9.1452 2.0610 19 8 7.1499 -8.5669 1.1220 20 7 7.4242 -9.7786 2.9601 21 6 6.9471 -10.5086 4.1437 22 6 8.1907 -11.0427 4.8849 23 6 9.3185 -10.0977 4.3925 24 6 8.8963 -9.8492 2.9228 25 6 4.9154 -6.8981 1.1753 26 6 4.2992 -6.1216 0.0067 27 1 -0.4850 0.8401 -0.0004 28 1 3.1243 -3.7306 0.8927 29 1 3.1243 -3.7322 -0.8872 30 1 2.6096 -8.2096 -0.9354 31 1 1.2599 -7.7209 0.1192 32 1 2.6426 -8.0526 2.1141 33 1 2.6915 -9.5328 1.1261 34 1 4.8414 -8.7773 0.1244 35 1 4.8814 -8.6924 3.1739 36 1 4.7860 -10.1829 2.2056 37 1 6.3866 -9.8360 4.7931 38 1 6.3153 -11.3418 3.8356 39 1 8.4003 -12.0740 4.6008 40 1 8.0599 -10.9578 5.9637 41 1 10.2899 -10.5898 4.4420 42 1 9.3243 -9.1673 4.9604 43 1 9.2206 -10.6752 2.2899 44 1 9.3121 -8.9089 2.5608 45 1 4.5578 -6.4825 2.1174 46 1 6.0017 -6.8197 1.1321 47 1 4.5057 -5.0580 0.1252 48 1 4.7260 -6.4743 -0.9322 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317854337.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:01:02 Heat of formation + Delta-G solvation = -80.920932 kcal Electronic energy + Delta-G solvation = -27116.531473 eV Core-core repulsion = 23296.979996 eV Total energy + Delta-G solvation = -3819.551477 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.64246 -39.68500 -38.07856 -36.94536 -33.83943 -32.38988 -32.23026 -31.42879 -29.86447 -29.25262 -28.15126 -25.46597 -24.63216 -23.25178 -23.11441 -21.71274 -20.70476 -19.49149 -18.96793 -17.64252 -17.40096 -17.07256 -16.56174 -15.77083 -15.46537 -15.41350 -15.06620 -14.76798 -14.32368 -14.23838 -14.02681 -13.83242 -13.75998 -13.53634 -13.35663 -13.12202 -12.82826 -12.67442 -12.51788 -12.14892 -12.04609 -11.92401 -11.77729 -11.76409 -11.32911 -11.27109 -11.08138 -11.00681 -10.99689 -10.76081 -10.70309 -10.59497 -9.94786 -9.76534 -9.25893 -9.06453 -9.02165 -8.40444 -8.17871 -6.45440 -6.17599 -3.87793 2.32097 2.56230 3.02846 3.14464 3.26407 3.29400 3.32539 3.67523 3.90333 4.00856 4.24302 4.31754 4.37860 4.49673 4.56085 4.69687 4.76506 4.81697 4.99705 5.04400 5.11903 5.16169 5.17196 5.17283 5.22480 5.29384 5.30630 5.32052 5.35826 5.41794 5.49941 5.58477 5.65215 5.69430 5.79996 5.85145 5.89609 5.90621 5.96181 5.99407 6.14721 6.19410 6.29659 6.77173 7.10104 7.63078 7.67777 7.84372 8.39120 8.65562 9.27464 10.89758 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016497 B = 0.002105 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.882117 B =13300.909539 C =14419.819721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.534 4.534 8 H 0.072 0.928 9 S -0.062 6.062 10 C -0.150 4.150 11 C 0.535 3.465 12 O -0.521 6.521 13 N -0.620 5.620 14 C 0.114 3.886 15 C -0.128 4.128 16 C -0.071 4.071 17 C -0.131 4.131 18 C 0.529 3.471 19 O -0.532 6.532 20 N -0.625 5.625 21 C 0.098 3.902 22 C -0.133 4.133 23 C -0.135 4.135 24 C 0.103 3.897 25 C -0.134 4.134 26 C 0.111 3.889 27 H 0.268 0.732 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.062 0.938 31 H 0.093 0.907 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.077 0.923 43 H 0.066 0.934 44 H 0.079 0.921 45 H 0.062 0.938 46 H 0.091 0.909 47 H 0.088 0.912 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.103 -26.148 9.715 33.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.683 4.683 8 H 0.090 0.910 9 S 0.165 5.835 10 C -0.301 4.301 11 C 0.323 3.677 12 O -0.396 6.396 13 N -0.356 5.356 14 C -0.009 4.009 15 C -0.167 4.167 16 C -0.090 4.090 17 C -0.171 4.171 18 C 0.318 3.682 19 O -0.408 6.408 20 N -0.361 5.361 21 C -0.025 4.025 22 C -0.171 4.171 23 C -0.173 4.173 24 C -0.019 4.019 25 C -0.172 4.172 26 C -0.012 4.012 27 H 0.078 0.922 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.080 0.920 31 H 0.111 0.889 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.096 0.904 43 H 0.085 0.915 44 H 0.097 0.903 45 H 0.081 0.919 46 H 0.109 0.891 47 H 0.106 0.894 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 16.354 -25.967 9.134 32.018 hybrid contribution 2.104 1.138 0.165 2.398 sum 18.458 -24.829 9.299 32.305 Atomic orbital electron populations 1.70015 1.05928 1.27489 1.46896 1.24990 0.95033 0.98990 0.94596 0.86230 0.79232 0.81271 0.78800 1.19939 1.20834 1.19962 1.22827 0.94864 0.91681 1.58892 0.91016 1.85368 1.05148 0.96308 1.96696 1.23549 1.06340 0.95489 1.04684 1.20304 0.86175 0.86227 0.74947 1.90678 1.15211 1.85287 1.48383 1.48199 1.06502 1.05688 1.75246 1.21459 1.00557 0.81427 0.97481 1.21982 0.94539 1.00419 0.99745 1.20918 0.94400 0.95653 0.98004 1.21752 0.90839 1.02777 1.01739 1.20512 0.89308 0.77349 0.81004 1.90696 1.75739 1.43281 1.31075 1.48610 1.07265 1.54027 1.26193 1.22059 0.97385 0.96046 0.86977 1.22644 0.94098 0.99708 1.00622 1.22806 0.98876 1.00326 0.95304 1.22220 0.80341 1.02427 0.96920 1.22105 1.02254 0.94194 0.98675 1.21737 0.79563 1.01373 0.98548 0.92180 0.89331 0.89306 0.91955 0.88882 0.91286 0.90891 0.90146 0.88840 0.88918 0.91122 0.91235 0.90409 0.89816 0.89716 0.90447 0.91533 0.90276 0.91929 0.89071 0.89400 0.91439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.56 13.22 55.49 0.73 -25.82 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 3 Si 0.92 21.78 29.55 -169.99 -5.02 16.76 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.53 -15.54 9.50 30.94 0.29 -15.25 16 8 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 9 S -0.06 -1.73 20.57 -107.50 -2.21 -3.94 16 10 C -0.15 -3.21 4.51 36.00 0.16 -3.04 16 11 C 0.54 10.75 7.72 -10.99 -0.08 10.66 16 12 O -0.52 -12.34 15.27 5.55 0.08 -12.25 16 13 N -0.62 -9.51 2.98 -172.52 -0.51 -10.03 16 14 C 0.11 1.45 6.42 -3.71 -0.02 1.42 16 15 C -0.13 -1.23 5.36 -26.61 -0.14 -1.38 16 16 C -0.07 -0.67 1.80 -90.58 -0.16 -0.84 16 17 C -0.13 -0.98 4.37 -27.88 -0.12 -1.10 16 18 C 0.53 5.11 7.56 -10.98 -0.08 5.03 16 19 O -0.53 -7.04 14.22 5.56 0.08 -6.96 16 20 N -0.62 -4.65 3.33 -170.52 -0.57 -5.22 16 21 C 0.10 0.43 6.48 -3.08 -0.02 0.41 16 22 C -0.13 -0.40 6.95 -24.90 -0.17 -0.57 16 23 C -0.14 -0.52 7.08 -24.58 -0.17 -0.69 16 24 C 0.10 0.67 6.91 -2.52 -0.02 0.65 16 25 C -0.13 -1.51 5.12 -26.59 -0.14 -1.65 16 26 C 0.11 1.43 6.35 -3.53 -0.02 1.41 16 27 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 28 H 0.09 1.77 7.70 -51.92 -0.40 1.37 16 29 H 0.09 1.78 7.95 -51.92 -0.41 1.37 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.09 1.34 7.00 -51.93 -0.36 0.98 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.84 7.96 -51.93 -0.41 0.42 16 35 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.28 8.14 -51.92 -0.42 -0.15 16 38 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.08 0.19 8.14 -51.92 -0.42 -0.23 16 40 H 0.08 0.17 8.14 -51.93 -0.42 -0.26 16 41 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 42 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.08 0.62 8.03 -51.93 -0.42 0.21 16 45 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 46 H 0.09 1.11 5.92 -51.93 -0.31 0.80 16 47 H 0.09 1.16 5.97 -51.93 -0.31 0.85 16 48 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 392.74 15.07 5.92 5.92 Total: -1.00 -36.74 392.74 -10.39 -47.13 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -8.09 Total: -2.66 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -0.80 Total: -2.91 kcal Atomic # 7 Polarization: -40.72 SS G_CDS: -0.35 Total: -41.07 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: 0.16 Total: -19.22 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: -1.73 SS G_CDS: -2.21 Total: -3.94 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.74 -10.39 -47.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317854337.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.793 kcal (2) G-P(sol) polarization free energy of solvation -36.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds