Wall clock time and date at job start Tue Mar 31 2020 23:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86800 * 120.00044 * 2 1 4 4 H 1.48502 * 109.47321 * 239.99926 * 3 2 1 5 5 H 1.48500 * 109.47014 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47130 * 120.00079 * 3 2 1 7 7 C 1.38653 * 120.00259 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00325 * 179.97438 * 7 2 1 9 9 O 1.34834 * 119.99611 * 0.02562 * 7 2 1 10 10 C 1.35752 * 116.99915 * 185.04956 * 9 7 2 11 11 C 1.38884 * 120.06794 * 354.47176 * 10 9 7 12 12 C 1.38102 * 119.92831 * 180.02562 * 11 10 9 13 13 C 1.38297 * 120.06737 * 359.97438 * 12 11 10 14 14 C 1.50700 * 119.92776 * 180.02562 * 13 12 11 15 15 N 1.46907 * 109.47245 * 89.99785 * 14 13 12 16 16 C 1.47481 * 110.99753 * 170.00280 * 15 14 13 17 17 C 1.53515 * 87.93151 * 138.70424 * 16 15 14 18 18 N 1.46499 * 114.16850 * 220.32467 * 17 16 15 19 19 C 1.34773 * 120.00098 * 204.99974 * 18 17 16 20 20 O 1.21612 * 119.99867 * 359.97438 * 19 18 17 21 21 C 1.43198 * 119.99910 * 180.02562 * 19 18 17 22 22 C 9.00804 * 154.96531 * 66.84688 * 12 1 2 23 23 C 8.98954 * 138.47580 * 32.63341 * 14 1 2 24 24 C 1.53003 * 117.50047 * 349.60070 * 23 22 21 25 25 C 1.53007 * 117.49746 * 280.94470 * 23 22 21 26 26 C 1.47475 * 110.99870 * 265.97061 * 15 14 13 27 27 C 1.38298 * 120.14332 * 0.29266 * 13 12 11 28 28 C 1.38101 * 120.06498 * 359.45169 * 27 13 12 29 29 H 0.96999 * 120.00166 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.03254 * 359.97438 * 11 10 9 31 31 H 1.08001 * 119.96271 * 179.97438 * 12 11 10 32 32 H 1.08996 * 109.47183 * 329.99697 * 14 13 12 33 33 H 1.09002 * 109.47254 * 209.99748 * 14 13 12 34 34 H 1.09011 * 113.47216 * 253.46876 * 16 15 14 35 35 H 1.08998 * 113.47879 * 23.93462 * 16 15 14 36 36 H 1.08998 * 114.16916 * 87.61972 * 17 16 15 37 37 H 0.97006 * 119.99952 * 25.00379 * 18 17 16 38 38 H 1.08991 * 115.54836 * 135.27822 * 23 22 21 39 39 H 1.09001 * 117.49846 * 0.02562 * 24 23 22 40 40 H 1.08999 * 117.49478 * 145.01909 * 24 23 22 41 41 H 1.08995 * 117.49471 * 214.98414 * 25 23 22 42 42 H 1.09005 * 117.49774 * 359.97438 * 25 23 22 43 43 H 1.09000 * 113.47751 * 336.06102 * 26 15 14 44 44 H 1.09004 * 113.47867 * 106.52834 * 26 15 14 45 45 H 1.08001 * 119.96750 * 179.71104 * 27 13 12 46 46 H 1.08004 * 120.03477 * 180.27432 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2845 2.7464 0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0088 -1.2007 0.0005 8 1 3.0888 -1.2007 0.0001 9 8 1.3347 -2.3684 0.0005 10 6 2.0699 -3.5046 0.1075 11 6 3.4571 -3.4394 0.0951 12 6 4.2023 -4.5971 0.2036 13 6 3.5684 -5.8202 0.3251 14 6 4.3846 -7.0815 0.4439 15 7 4.6560 -7.3576 1.8610 16 6 5.2431 -8.6992 2.0351 17 6 6.2006 -8.0856 3.0662 18 7 7.5733 -8.5910 2.9853 19 6 8.3698 -8.5551 4.0719 20 8 7.9491 -8.1027 5.1194 21 6 9.7117 -9.0487 3.9926 22 6 10.8128 -9.4532 3.9270 23 6 12.1919 -9.9614 3.8444 24 6 12.4051 -11.4626 4.0494 25 6 12.8348 -10.4730 5.1352 26 6 5.9574 -6.7964 2.2690 27 6 2.1872 -5.8890 0.3323 28 6 1.4365 -4.7344 0.2294 29 1 -0.4850 0.8400 0.0004 30 1 3.9526 -2.4845 -0.0002 31 1 5.2811 -4.5471 0.1936 32 1 5.3273 -6.9558 -0.0888 33 1 3.8310 -7.9147 0.0110 34 1 4.5505 -9.4241 2.4631 35 1 5.7464 -9.0721 1.1430 36 1 5.8072 -8.0628 4.0824 37 1 7.9090 -8.9515 2.1495 38 1 12.8375 -9.4547 3.1272 39 1 11.5242 -12.0740 4.2449 40 1 13.1912 -11.9434 3.4671 41 1 13.9034 -10.3030 5.2669 42 1 12.2367 -10.4328 6.0456 43 1 6.6514 -6.6615 1.4393 44 1 5.8704 -5.9085 2.8952 45 1 1.6952 -6.8462 0.4226 46 1 0.3578 -4.7883 0.2395 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318020439.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:44 Heat of formation + Delta-G solvation = 61.320531 kcal Electronic energy + Delta-G solvation = -26610.656732 eV Core-core repulsion = 22661.829356 eV Total energy + Delta-G solvation = -3948.827376 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.75375 -40.74814 -40.09115 -38.50193 -38.23540 -35.37533 -34.35201 -33.77225 -32.35920 -31.77137 -29.02014 -27.42008 -26.94821 -26.18590 -24.53403 -23.59538 -23.30773 -22.91935 -21.83668 -21.42992 -19.83628 -19.67375 -18.84764 -17.95572 -17.60826 -16.79237 -16.57909 -16.47597 -16.23643 -16.13898 -15.84233 -15.73508 -15.50146 -15.21944 -15.05097 -14.37716 -14.21481 -13.99032 -13.72094 -13.57093 -13.54470 -13.19045 -13.08735 -12.93274 -12.66717 -12.43885 -12.41615 -12.34566 -12.27336 -12.15650 -11.80781 -11.76504 -11.69990 -11.16985 -11.11303 -10.79151 -10.73900 -10.24472 -9.89186 -9.75709 -8.90005 -8.47399 -6.15765 0.36268 0.61557 0.68748 1.06819 1.33391 1.44291 1.49848 1.85470 2.17171 2.29851 2.76357 2.95101 3.02858 3.15420 3.27054 3.42639 3.53660 3.82068 3.84321 3.96249 3.96483 4.01113 4.04323 4.14213 4.23295 4.34475 4.40000 4.44950 4.61839 4.65014 4.71873 4.76351 4.77374 4.84345 4.89280 4.96774 5.08122 5.09094 5.12463 5.20438 5.25654 5.29002 5.35197 5.60022 5.72105 5.83435 6.02647 6.03869 6.09616 6.25333 6.29553 6.94976 6.97093 7.78546 8.75706 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016780 B = 0.001625 C = 0.001526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.266888 B =17231.256675 C =18344.287059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.023 4.023 3 Si 1.018 2.982 4 H -0.256 1.256 5 H -0.270 1.270 6 H -0.260 1.260 7 C -0.415 4.415 8 H 0.100 0.900 9 O -0.234 6.234 10 C 0.111 3.889 11 C -0.245 4.245 12 C -0.062 4.062 13 C -0.151 4.151 14 C 0.083 3.917 15 N -0.481 5.481 16 C 0.005 3.995 17 C 0.120 3.880 18 N -0.686 5.686 19 C 0.637 3.363 20 O -0.569 6.569 21 C -0.266 4.266 22 C -0.023 4.023 23 C -0.087 4.087 24 C -0.146 4.146 25 C -0.161 4.161 26 C -0.014 4.014 27 C -0.051 4.051 28 C -0.206 4.206 29 H 0.273 0.727 30 H 0.116 0.884 31 H 0.134 0.866 32 H 0.069 0.931 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.110 0.890 37 H 0.421 0.579 38 H 0.161 0.839 39 H 0.094 0.906 40 H 0.133 0.867 41 H 0.130 0.870 42 H 0.088 0.912 43 H 0.092 0.908 44 H 0.068 0.932 45 H 0.147 0.853 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.660 -25.738 2.771 37.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.220 4.220 3 Si 0.837 3.163 4 H -0.180 1.180 5 H -0.195 1.195 6 H -0.184 1.184 7 C -0.491 4.491 8 H 0.117 0.883 9 O -0.141 6.141 10 C 0.061 3.939 11 C -0.264 4.264 12 C -0.080 4.080 13 C -0.152 4.152 14 C -0.045 4.045 15 N -0.204 5.204 16 C -0.124 4.124 17 C 0.014 3.986 18 N -0.337 5.337 19 C 0.425 3.575 20 O -0.449 6.449 21 C -0.269 4.269 22 C -0.025 4.025 23 C -0.104 4.104 24 C -0.183 4.183 25 C -0.198 4.198 26 C -0.144 4.144 27 C -0.069 4.069 28 C -0.226 4.226 29 H 0.082 0.918 30 H 0.133 0.867 31 H 0.152 0.848 32 H 0.087 0.913 33 H 0.117 0.883 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.128 0.872 37 H 0.259 0.741 38 H 0.178 0.822 39 H 0.113 0.887 40 H 0.151 0.849 41 H 0.148 0.852 42 H 0.107 0.893 43 H 0.110 0.890 44 H 0.086 0.914 45 H 0.164 0.836 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 25.271 -25.060 3.778 35.790 hybrid contribution 0.363 1.161 -0.722 1.415 sum 25.634 -23.899 3.056 35.179 Atomic orbital electron populations 1.70177 1.08001 1.28832 1.48863 1.26581 0.96857 1.02699 0.95858 0.84663 0.77419 0.74344 0.79870 1.18014 1.19479 1.18425 1.21767 0.92449 0.81525 1.53373 0.88285 1.83939 1.35987 1.12618 1.81577 1.19956 0.91652 0.87971 0.94310 1.21224 0.93109 0.99991 1.12067 1.20903 0.99436 0.91149 0.96528 1.19569 0.93557 0.94806 1.07253 1.21444 0.99081 0.94818 0.89115 1.68974 1.25795 1.06048 1.19574 1.24280 0.96027 0.93603 0.98458 1.22583 0.80562 0.94601 1.00824 1.45613 1.12598 1.62456 1.13010 1.14860 0.81843 0.77078 0.83698 1.90861 1.75415 1.47540 1.31112 1.20522 0.94436 1.05937 1.06000 1.22157 0.92693 0.92139 0.95515 1.19336 0.86812 0.99430 1.04847 1.23245 1.04237 0.89074 1.01750 1.23253 1.02672 1.01974 0.91882 1.24485 0.91400 0.98679 0.99887 1.20873 0.93484 0.96759 0.95793 1.20477 0.99915 0.90689 1.11488 0.91846 0.86664 0.84817 0.91264 0.88321 0.87862 0.87858 0.87212 0.74087 0.82213 0.88715 0.84852 0.85177 0.89311 0.88988 0.91370 0.83567 0.87082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.66 13.67 21.61 0.30 -57.37 16 2 C -0.02 -1.31 5.49 84.83 0.47 -0.84 16 3 Si 1.02 43.87 29.55 68.60 2.03 45.89 16 4 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 5 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 6 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 7 C -0.42 -24.86 9.49 67.92 0.64 -24.21 16 8 H 0.10 5.46 5.20 -2.91 -0.02 5.44 16 9 O -0.23 -14.57 9.76 -22.80 -0.22 -14.79 16 10 C 0.11 5.73 6.65 22.58 0.15 5.88 16 11 C -0.24 -10.97 9.17 22.39 0.21 -10.76 16 12 C -0.06 -2.14 9.69 22.25 0.22 -1.93 16 13 C -0.15 -4.63 5.47 -19.84 -0.11 -4.73 16 14 C 0.08 1.68 4.94 85.56 0.42 2.10 16 15 N -0.48 -9.92 6.32 -932.56 -5.89 -15.81 16 16 C 0.01 0.07 7.45 83.57 0.62 0.69 16 17 C 0.12 2.09 4.59 45.45 0.21 2.30 16 18 N -0.69 -10.30 5.38 -449.28 -2.42 -12.72 16 19 C 0.64 14.31 7.65 85.49 0.65 14.96 16 20 O -0.57 -18.05 16.68 -4.07 -0.07 -18.12 16 21 C -0.27 -5.14 13.62 30.00 0.41 -4.73 16 22 C -0.02 -0.34 13.48 31.12 0.42 0.08 16 23 C -0.09 -0.62 6.21 -12.59 -0.08 -0.70 16 24 C -0.15 -0.57 10.21 30.62 0.31 -0.26 16 25 C -0.16 -0.87 10.21 30.62 0.31 -0.56 16 26 C -0.01 -0.28 7.52 83.57 0.63 0.34 16 27 C -0.05 -1.73 9.69 22.25 0.22 -1.51 16 28 C -0.21 -9.07 9.99 22.39 0.22 -8.85 16 29 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 30 H 0.12 5.28 5.64 -2.91 -0.02 5.26 16 31 H 0.13 3.75 8.06 -2.91 -0.02 3.73 16 32 H 0.07 1.13 7.24 -2.39 -0.02 1.12 16 33 H 0.10 1.63 8.02 -2.39 -0.02 1.61 16 34 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 35 H 0.10 0.76 7.90 -2.39 -0.02 0.74 16 36 H 0.11 2.50 7.45 -2.39 -0.02 2.48 16 37 H 0.42 3.45 8.72 -92.70 -0.81 2.64 16 38 H 0.16 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.13 -0.09 8.14 -2.39 -0.02 -0.11 16 41 H 0.13 0.16 8.14 -2.39 -0.02 0.14 16 42 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 43 H 0.09 1.44 7.42 -2.39 -0.02 1.43 16 44 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 45 H 0.15 3.93 8.06 -2.91 -0.02 3.91 16 46 H 0.11 4.86 8.06 -2.91 -0.02 4.83 16 Total: -1.00 -82.77 401.28 -0.14 -82.91 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: 0.21 Total: 22.73 kcal Atomic # 6 Polarization: -38.64 SS G_CDS: 5.92 Total: -32.72 kcal Atomic # 7 Polarization: -77.89 SS G_CDS: -8.01 Total: -85.90 kcal Atomic # 8 Polarization: -32.62 SS G_CDS: -0.29 Total: -32.91 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Total: -82.77 -0.14 -82.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318020439.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.229 kcal (2) G-P(sol) polarization free energy of solvation -82.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds