Wall clock time and date at job start Tue Mar 31 2020 23:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86799 * 119.99572 * 2 1 4 4 H 1.48501 * 109.47047 * 269.99781 * 3 2 1 5 5 H 1.48493 * 109.47342 * 30.00028 * 3 2 1 6 6 H 1.48505 * 109.47179 * 150.00222 * 3 2 1 7 7 C 1.38793 * 120.00040 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99657 * 179.97438 * 7 2 1 9 9 S 1.76197 * 120.00249 * 359.97438 * 7 2 1 10 10 C 1.81000 * 100.00286 * 180.02562 * 9 7 2 11 11 C 1.50693 * 109.47504 * 180.02562 * 10 9 7 12 12 O 1.21289 * 119.99641 * 359.97438 * 11 10 9 13 13 N 1.34780 * 120.00376 * 180.02562 * 11 10 9 14 14 C 1.47853 * 126.92360 * 0.02562 * 13 11 10 15 15 C 1.56022 * 105.11229 * 181.89814 * 14 13 11 16 16 H 1.09002 * 116.25952 * 158.84774 * 15 14 13 17 17 C 1.57091 * 99.59694 * 32.80849 * 15 14 13 18 18 C 1.49283 * 126.92561 * 179.70805 * 13 11 10 19 19 H 1.08994 * 116.12464 * 16.89476 * 18 13 11 20 20 C 1.56014 * 104.12596 * 246.92407 * 18 13 11 21 21 N 1.47809 * 105.10957 * 288.64982 * 20 18 13 22 22 C 1.46903 * 110.72549 * 122.75880 * 21 20 18 23 23 C 1.52994 * 109.47083 * 188.36424 * 22 21 20 24 24 C 1.53002 * 109.47305 * 180.02562 * 23 22 21 25 25 H 1.09001 * 109.86401 * 54.30106 * 24 23 22 26 26 C 1.54096 * 109.87980 * 175.30735 * 24 23 22 27 27 C 1.54805 * 104.18843 * 121.45711 * 26 24 23 28 28 C 1.54995 * 102.09302 * 20.87866 * 27 26 24 29 29 O 1.43741 * 109.87813 * 293.29524 * 24 23 22 30 30 H 0.97004 * 120.00108 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.47223 * 300.00103 * 10 9 7 32 32 H 1.09003 * 109.47329 * 59.99831 * 10 9 7 33 33 H 1.09004 * 110.31688 * 300.81096 * 14 13 11 34 34 H 1.09001 * 110.31419 * 62.99130 * 14 13 11 35 35 H 1.08997 * 112.35463 * 64.32911 * 17 15 14 36 36 H 1.08999 * 112.35565 * 191.74246 * 17 15 14 37 37 H 1.08999 * 110.32044 * 47.69999 * 20 18 13 38 38 H 1.09001 * 110.31687 * 169.79943 * 20 18 13 39 39 H 1.08996 * 109.47019 * 308.36773 * 22 21 20 40 40 H 1.09005 * 109.46859 * 68.36683 * 22 21 20 41 41 H 1.09006 * 109.47454 * 300.00140 * 23 22 21 42 42 H 1.09003 * 109.47269 * 59.99888 * 23 22 21 43 43 H 1.09002 * 110.49008 * 240.13197 * 26 24 23 44 44 H 1.09001 * 110.48692 * 2.77508 * 26 24 23 45 45 H 1.08994 * 110.91021 * 139.07945 * 27 26 24 46 46 H 1.09007 * 110.90616 * 262.64609 * 27 26 24 47 47 H 1.08998 * 110.61954 * 81.47702 * 28 27 26 48 48 H 1.08998 * 110.61630 * 204.32142 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2019 0.0001 9 16 1.1293 -2.7279 0.0019 10 6 2.5159 -3.8914 0.0029 11 6 1.9875 -5.3027 0.0036 12 8 0.7912 -5.5022 0.0038 13 7 2.8443 -6.3431 0.0049 14 6 4.3214 -6.2774 0.0064 15 6 4.7947 -7.7632 -0.0423 16 1 5.8096 -7.9346 -0.4013 17 6 3.6333 -8.3800 -0.9017 18 6 2.4932 -7.7940 0.0118 19 1 1.4693 -8.0414 -0.2683 20 6 2.9845 -8.2981 1.4041 21 7 4.4600 -8.2970 1.3156 22 6 5.0434 -7.4568 2.3700 23 6 6.5468 -7.3067 2.1291 24 6 7.1546 -6.4322 3.2276 25 1 6.9039 -6.8401 4.2068 26 6 8.6854 -6.3709 3.0616 27 6 8.9891 -4.8618 2.8978 28 6 7.7283 -4.2076 3.5179 29 8 6.6554 -5.0889 3.1152 30 1 -0.4850 0.8401 -0.0004 31 1 3.1245 -3.7321 -0.8872 32 1 3.1246 -3.7305 0.8928 33 1 4.6771 -5.7378 -0.8714 34 1 4.6778 -5.7964 0.9173 35 1 3.6067 -7.9758 -1.9136 36 1 3.6480 -9.4699 -0.8972 37 1 2.6500 -7.6221 2.1910 38 1 2.6184 -9.3074 1.5920 39 1 4.5728 -6.4738 2.3533 40 1 4.8758 -7.9234 3.3407 41 1 7.0174 -8.2898 2.1458 42 1 6.7144 -6.8402 1.1583 43 1 9.1814 -6.7658 3.9483 44 1 8.9951 -6.9212 2.1732 45 1 9.8849 -4.5829 3.4525 46 1 9.0876 -4.5970 1.8450 47 1 7.8079 -4.1748 4.6045 48 1 7.5779 -3.2061 3.1148 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318187111.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:59:34 Heat of formation + Delta-G solvation = -40.962072 kcal Electronic energy + Delta-G solvation = -28350.115525 eV Core-core repulsion = 24532.296794 eV Total energy + Delta-G solvation = -3817.818731 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.33502 -39.65409 -38.15500 -34.81897 -32.78270 -32.40700 -32.29737 -30.51007 -29.91546 -28.63116 -26.91921 -25.48109 -24.86820 -23.44735 -22.11883 -21.59659 -21.13149 -20.10325 -18.72005 -17.72795 -16.82600 -16.76028 -16.65459 -16.08747 -15.88216 -15.42125 -14.94504 -14.78688 -14.46590 -14.29331 -13.90941 -13.58936 -13.43161 -13.34320 -12.85098 -12.75562 -12.63197 -12.51957 -12.13919 -12.03132 -12.00813 -11.77976 -11.61373 -11.54588 -11.32000 -11.22472 -11.13181 -11.04700 -10.99800 -10.95287 -10.76070 -10.73732 -9.89579 -9.79181 -9.40892 -9.04500 -8.66866 -8.27240 -8.20750 -6.47437 -6.19355 -3.89585 2.87383 3.08408 3.23361 3.26298 3.31244 3.59307 3.62817 3.63414 4.16913 4.22558 4.25642 4.32340 4.39922 4.57626 4.63869 4.76144 4.82325 4.93292 4.95552 4.99937 5.04373 5.15686 5.22088 5.24873 5.34643 5.39661 5.43426 5.46521 5.50802 5.53553 5.56624 5.62477 5.64951 5.68458 5.71757 5.77555 5.78645 5.82464 5.92511 5.94713 6.02867 6.19110 6.34663 6.55995 6.70396 6.81489 7.61871 7.72799 8.37756 8.58634 9.25870 10.88179 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008897 B = 0.003720 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3146.526163 B = 7524.511121 C =10160.442962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.533 4.533 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.145 4.145 11 C 0.552 3.448 12 O -0.517 6.517 13 N -0.628 5.628 14 C 0.062 3.938 15 C 0.052 3.948 16 H 0.131 0.869 17 C -0.135 4.135 18 C 0.113 3.887 19 H 0.126 0.874 20 C 0.027 3.973 21 N -0.513 5.513 22 C 0.040 3.960 23 C -0.116 4.116 24 C 0.075 3.925 25 H 0.067 0.933 26 C -0.150 4.150 27 C -0.156 4.156 28 C 0.045 3.955 29 O -0.369 6.369 30 H 0.268 0.732 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.064 0.936 38 H 0.087 0.913 39 H 0.055 0.945 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.077 0.923 47 H 0.059 0.941 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.533 -18.219 4.390 27.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.744 3.256 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.682 4.682 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.295 4.295 11 C 0.341 3.659 12 O -0.391 6.391 13 N -0.366 5.366 14 C -0.062 4.062 15 C -0.057 4.057 16 H 0.149 0.851 17 C -0.173 4.173 18 C 0.009 3.991 19 H 0.144 0.856 20 C -0.102 4.102 21 N -0.237 5.237 22 C -0.088 4.088 23 C -0.153 4.153 24 C 0.017 3.983 25 H 0.085 0.915 26 C -0.188 4.188 27 C -0.193 4.193 28 C -0.032 4.032 29 O -0.288 6.288 30 H 0.078 0.922 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.088 0.912 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.111 0.889 37 H 0.082 0.918 38 H 0.106 0.894 39 H 0.073 0.927 40 H 0.092 0.908 41 H 0.100 0.900 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.097 0.903 45 H 0.096 0.904 46 H 0.096 0.904 47 H 0.077 0.923 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 17.506 -18.765 4.429 26.042 hybrid contribution 2.004 2.202 0.092 2.979 sum 19.510 -16.564 4.521 25.989 Atomic orbital electron populations 1.70021 1.05941 1.27401 1.46974 1.24978 0.95011 0.98965 0.94567 0.86178 0.79434 0.81617 0.78339 1.20266 1.20731 1.19705 1.22855 0.94879 0.91623 1.58815 0.91002 1.85359 1.05010 0.96330 1.96699 1.23489 1.06337 0.95028 1.04675 1.20026 0.85647 0.85403 0.74873 1.90702 1.14828 1.85104 1.48489 1.49300 1.06292 1.05476 1.75521 1.23266 0.81067 0.98740 1.03136 1.24622 0.99484 0.91325 0.90223 0.85112 1.24010 0.93918 1.01133 0.98280 1.24026 0.99855 0.80363 0.94888 0.85595 1.23602 0.87755 1.01625 0.97236 1.64962 1.08229 1.48651 1.01846 1.22407 0.94540 0.96702 0.95157 1.21848 0.95298 0.99395 0.98787 1.22745 0.92541 0.84385 0.98665 0.91499 1.22988 0.95759 0.97131 1.02944 1.23127 0.98858 0.94996 1.02342 1.23582 0.85682 0.95035 0.98871 1.89001 1.36193 1.15346 1.88266 0.92213 0.89531 0.89432 0.91241 0.89575 0.89747 0.88923 0.91762 0.89435 0.92692 0.90765 0.89979 0.90920 0.90751 0.90284 0.90354 0.90419 0.92270 0.88780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.59 13.22 55.49 0.73 -25.86 16 2 C 0.07 2.15 5.49 -17.43 -0.10 2.05 16 3 Si 0.92 21.74 29.55 -169.99 -5.02 16.72 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.53 -15.59 9.50 30.94 0.29 -15.30 16 8 H 0.07 2.00 7.80 -52.48 -0.41 1.59 16 9 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 10 C -0.14 -3.17 5.44 36.00 0.20 -2.97 16 11 C 0.55 11.26 7.91 -10.99 -0.09 11.17 16 12 O -0.52 -12.42 16.21 5.55 0.09 -12.33 16 13 N -0.63 -9.65 2.95 -156.60 -0.46 -10.11 16 14 C 0.06 0.76 5.30 -1.68 -0.01 0.75 16 15 C 0.05 0.48 4.06 -62.31 -0.25 0.22 16 16 H 0.13 0.94 7.58 -51.93 -0.39 0.55 16 17 C -0.13 -1.27 6.83 -22.11 -0.15 -1.42 16 18 C 0.11 1.40 5.24 -62.37 -0.33 1.08 16 19 H 0.13 1.64 8.06 -51.93 -0.42 1.22 16 20 C 0.03 0.30 6.24 -1.71 -0.01 0.29 16 21 N -0.51 -5.12 5.39 -217.16 -1.17 -6.29 16 22 C 0.04 0.40 4.13 -3.83 -0.02 0.39 16 23 C -0.12 -0.94 4.27 -26.73 -0.11 -1.06 16 24 C 0.08 0.64 3.40 -26.16 -0.09 0.55 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 26 C -0.15 -0.98 6.64 -25.21 -0.17 -1.15 16 27 C -0.16 -1.08 7.16 -24.73 -0.18 -1.26 16 28 C 0.04 0.40 7.72 38.21 0.29 0.70 16 29 O -0.37 -4.28 10.84 -35.23 -0.38 -4.66 16 30 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 31 H 0.09 1.78 8.14 -51.91 -0.42 1.36 16 32 H 0.09 1.85 8.14 -51.91 -0.42 1.43 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.09 1.14 5.09 -51.93 -0.26 0.88 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.85 7.54 -51.93 -0.39 0.46 16 38 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.06 0.71 5.56 -51.93 -0.29 0.42 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.61 6.34 -51.93 -0.33 0.28 16 43 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.08 0.46 7.70 -51.93 -0.40 0.06 16 45 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 48 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 387.34 15.07 5.84 5.84 Total: -1.00 -35.08 387.34 -11.25 -46.33 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -7.95 Total: 0.24 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: -0.71 Total: -5.95 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: -0.90 Total: -42.27 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.29 Total: -16.99 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.08 -11.25 -46.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318187111.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.369 kcal (2) G-P(sol) polarization free energy of solvation -35.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds