Wall clock time and date at job start Tue Mar 31 2020 23:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86796 * 119.99993 * 2 1 4 4 H 1.48503 * 109.47327 * 239.99925 * 3 2 1 5 5 H 1.48505 * 109.47059 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47290 * 120.00169 * 3 2 1 7 7 C 1.38814 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99704 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99891 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99477 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46883 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.47314 * 295.00505 * 11 10 9 13 13 N 1.46498 * 109.46726 * 55.00397 * 11 10 9 14 14 C 1.34783 * 120.00018 * 205.00037 * 13 11 10 15 15 O 1.21285 * 119.99349 * 359.97438 * 14 13 11 16 16 C 1.50698 * 120.00276 * 179.97438 * 14 13 11 17 17 H 1.09001 * 109.46749 * 15.00328 * 16 14 13 18 18 F 1.39896 * 109.47278 * 254.99735 * 16 14 13 19 19 C 1.53001 * 109.47038 * 134.99957 * 16 14 13 20 20 F 1.39894 * 109.47284 * 59.99902 * 19 16 14 21 21 F 1.39894 * 109.47279 * 180.02562 * 19 16 14 22 22 F 1.39906 * 109.46907 * 299.99885 * 19 16 14 23 23 C 1.52996 * 109.47102 * 175.00371 * 11 10 9 24 24 C 1.53000 * 109.46955 * 299.99940 * 23 11 10 25 25 C 1.53005 * 109.47145 * 179.97438 * 24 23 11 26 26 C 1.52996 * 109.46840 * 60.00369 * 25 24 23 27 27 C 1.53003 * 109.47304 * 299.99756 * 26 25 24 28 28 C 1.52996 * 109.46951 * 180.02562 * 23 11 10 29 29 H 0.96993 * 120.00031 * 0.02562 * 1 2 3 30 30 H 0.96992 * 120.00556 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.46891 * 60.00526 * 10 9 7 32 32 H 1.08993 * 109.47378 * 299.99898 * 10 9 7 33 33 H 0.96995 * 120.00562 * 24.99991 * 13 11 10 34 34 H 1.08997 * 109.47474 * 60.00037 * 23 11 10 35 35 H 1.08996 * 109.47552 * 300.00026 * 24 23 11 36 36 H 1.09002 * 109.47044 * 60.00129 * 24 23 11 37 37 H 1.08997 * 109.47396 * 300.00165 * 25 24 23 38 38 H 1.09006 * 109.47013 * 179.97438 * 25 24 23 39 39 H 1.08998 * 109.47140 * 180.02562 * 26 25 24 40 40 H 1.08997 * 109.47293 * 59.99733 * 26 25 24 41 41 H 1.09001 * 109.46679 * 300.00652 * 27 26 25 42 42 H 1.08992 * 109.47399 * 180.02562 * 27 26 25 43 43 H 1.08993 * 109.47243 * 299.99585 * 28 23 11 44 44 H 1.08996 * 109.47312 * 60.00123 * 28 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6568 -0.0017 11 6 1.0639 -4.8198 -0.0021 12 1 0.4980 -4.8143 0.9295 13 7 0.1441 -4.6753 -1.1331 14 6 -1.0804 -5.2362 -1.0818 15 8 -1.4205 -5.8608 -0.0993 16 6 -2.0269 -5.0872 -2.2450 17 1 -1.4761 -4.7404 -3.1193 18 9 -3.0211 -4.1578 -1.9211 19 6 -2.6735 -6.4393 -2.5528 20 9 -3.3802 -6.8845 -1.4306 21 9 -3.5516 -6.3011 -3.6330 22 9 -1.6792 -7.3687 -2.8767 23 6 1.8247 -6.1411 -0.1289 24 6 2.6190 -6.1487 -1.4365 25 6 3.3804 -7.4698 -1.5631 26 6 2.3866 -8.6331 -1.5633 27 6 1.5922 -8.6255 -0.2556 28 6 0.8304 -7.3039 -0.1299 29 1 -0.4850 0.8400 -0.0004 30 1 0.3557 -2.3881 -0.0005 31 1 2.6854 -3.7149 0.8879 32 1 2.6841 -3.7141 -0.8921 33 1 0.4162 -4.1761 -1.9189 34 1 2.5091 -6.2485 0.7126 35 1 1.9347 -6.0413 -2.2780 36 1 3.3273 -5.3202 -1.4362 37 1 4.0648 -7.5768 -0.7216 38 1 3.9459 -7.4754 -2.4949 39 1 2.9289 -9.5743 -1.6530 40 1 1.7021 -8.5261 -2.4048 41 1 2.2767 -8.7324 0.5859 42 1 0.8845 -9.4545 -0.2556 43 1 0.2642 -7.2987 0.8014 44 1 0.1464 -7.1963 -0.9716 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319651972.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:57 Heat of formation + Delta-G solvation = -241.370078 kcal Electronic energy + Delta-G solvation = -32381.390901 eV Core-core repulsion = 27446.811911 eV Total energy + Delta-G solvation = -4934.578991 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.151 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.46771 -48.47014 -47.85720 -47.65193 -40.38385 -38.19917 -35.87819 -33.79320 -32.17353 -30.90568 -30.55862 -30.46346 -27.21612 -24.69117 -23.82259 -22.83912 -21.79379 -21.35487 -20.33390 -19.52153 -19.09368 -18.91574 -18.44415 -17.49449 -17.10140 -16.62961 -15.86286 -15.54413 -14.93587 -14.72420 -14.69112 -14.63534 -14.54521 -14.27830 -14.23085 -14.11042 -13.94852 -13.92507 -13.87271 -13.54140 -13.31006 -13.20520 -12.87904 -12.51935 -12.32734 -11.96665 -11.76771 -11.68059 -11.13031 -11.05474 -11.03958 -10.86779 -10.84883 -10.47090 -10.27611 -10.18743 -9.93220 -9.83746 -9.75047 -8.97130 -8.88357 -7.03935 -5.84154 -3.15099 1.91084 2.27940 2.79958 3.22611 3.38804 3.43848 3.45045 3.66134 3.74488 4.18409 4.35536 4.49669 4.68490 4.71167 4.75346 4.80040 5.14982 5.23040 5.35324 5.43178 5.48447 5.55164 5.58824 5.69135 5.71267 5.83089 5.90705 6.01999 6.07047 6.12491 6.21167 6.23529 6.27555 6.38209 6.44874 6.53090 6.58243 6.71855 7.36269 7.61345 7.98365 8.33015 9.44918 9.98981 10.33852 11.37714 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.009901 B = 0.004481 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2827.455028 B = 6246.931233 C = 8405.640160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.009 4.009 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.247 4.247 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.143 3.857 11 C 0.142 3.858 12 H 0.092 0.908 13 N -0.685 5.685 14 C 0.495 3.505 15 O -0.499 6.499 16 C 0.038 3.962 17 H 0.142 0.858 18 F -0.149 7.149 19 C 0.446 3.554 20 F -0.155 7.155 21 F -0.171 7.171 22 F -0.168 7.168 23 C -0.094 4.094 24 C -0.117 4.117 25 C -0.117 4.117 26 C -0.119 4.119 27 C -0.119 4.119 28 C -0.108 4.108 29 H 0.257 0.743 30 H 0.385 0.615 31 H 0.036 0.964 32 H 0.032 0.968 33 H 0.408 0.592 34 H 0.081 0.919 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.055 0.945 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.056 0.944 43 H 0.069 0.931 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.579 -17.178 -7.100 18.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.206 4.206 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.378 4.378 8 H 0.088 0.912 9 N -0.377 5.377 10 C 0.015 3.985 11 C 0.038 3.962 12 H 0.110 0.890 13 N -0.336 5.336 14 C 0.276 3.724 15 O -0.373 6.373 16 C -0.003 4.003 17 H 0.160 0.840 18 F -0.129 7.129 19 C 0.391 3.609 20 F -0.136 7.136 21 F -0.153 7.153 22 F -0.150 7.150 23 C -0.114 4.114 24 C -0.154 4.154 25 C -0.155 4.155 26 C -0.156 4.156 27 C -0.157 4.157 28 C -0.145 4.145 29 H 0.067 0.933 30 H 0.219 0.781 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.244 0.756 34 H 0.099 0.901 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.087 0.913 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.431 -17.495 -6.361 18.620 hybrid contribution 0.032 1.185 -0.479 1.279 sum 0.463 -16.310 -6.840 17.692 Atomic orbital electron populations 1.69651 1.05104 1.25974 1.56984 1.24757 0.95493 0.97741 1.02588 0.86270 0.78528 0.83497 0.77851 1.21245 1.21671 1.21232 1.19137 0.90973 0.83988 1.43670 0.91166 1.42347 1.05934 0.99729 1.89688 1.21052 0.93075 0.85058 0.99336 1.21489 0.90491 0.94970 0.89282 0.88963 1.45881 1.13423 1.52815 1.21455 1.19844 0.83081 0.81529 0.87985 1.90828 1.75177 1.39632 1.31676 1.22764 0.88860 0.86043 1.02617 0.84022 1.93052 1.61033 1.64608 1.94253 1.20394 0.77753 0.87347 0.75423 1.93305 1.78977 1.90353 1.50951 1.93241 1.70209 1.95871 1.55930 1.93235 1.61005 1.68051 1.92692 1.21544 0.97131 0.94006 0.98678 1.21651 0.98979 0.97416 0.97357 1.21517 0.97705 0.94844 1.01401 1.21533 0.98069 0.97960 0.98058 1.21562 0.98797 0.97852 0.97455 1.21658 0.97042 0.93079 1.02759 0.93317 0.78057 0.94663 0.95067 0.75581 0.90075 0.92182 0.91059 0.92121 0.92362 0.92637 0.92289 0.92295 0.92501 0.91254 0.92235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.19 13.06 55.49 0.72 -26.47 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 3 Si 0.91 21.65 29.55 -169.99 -5.02 16.63 16 4 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.25 -6.49 9.99 -15.06 -0.15 -6.64 16 8 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 9 N -0.73 -16.96 5.43 -59.90 -0.33 -17.29 16 10 C 0.14 2.50 5.60 -4.04 -0.02 2.48 16 11 C 0.14 2.10 2.16 -67.93 -0.15 1.95 16 12 H 0.09 1.58 7.58 -51.93 -0.39 1.19 16 13 N -0.68 -9.48 3.64 -53.80 -0.20 -9.68 16 14 C 0.50 7.22 5.26 -10.98 -0.06 7.16 16 15 O -0.50 -8.58 12.73 5.55 0.07 -8.51 16 16 C 0.04 0.48 3.78 -27.88 -0.11 0.37 16 17 H 0.14 1.18 7.99 -51.93 -0.42 0.76 16 18 F -0.15 -2.23 17.03 2.25 0.04 -2.20 16 19 C 0.45 5.50 2.86 37.16 0.11 5.60 16 20 F -0.15 -2.26 15.95 2.25 0.04 -2.22 16 21 F -0.17 -2.01 17.30 2.25 0.04 -1.97 16 22 F -0.17 -1.96 16.92 2.25 0.04 -1.92 16 23 C -0.09 -1.14 2.07 -90.62 -0.19 -1.33 16 24 C -0.12 -1.26 4.70 -26.73 -0.13 -1.39 16 25 C -0.12 -1.13 5.92 -26.73 -0.16 -1.29 16 26 C -0.12 -1.15 5.92 -26.73 -0.16 -1.31 16 27 C -0.12 -1.27 5.93 -26.70 -0.16 -1.43 16 28 C -0.11 -1.35 3.73 -26.70 -0.10 -1.45 16 29 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 30 H 0.39 9.63 7.33 -40.82 -0.30 9.33 16 31 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.03 0.52 6.17 -51.93 -0.32 0.20 16 33 H 0.41 5.17 8.49 -40.82 -0.35 4.82 16 34 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.06 0.64 7.60 -51.93 -0.39 0.25 16 36 H 0.07 0.80 6.32 -51.93 -0.33 0.47 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.99 7.53 -51.93 -0.39 0.60 16 44 H 0.06 0.80 5.67 -51.93 -0.29 0.50 16 LS Contribution 362.32 15.07 5.46 5.46 Total: -1.00 -30.32 362.32 -6.61 -36.93 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -6.11 Total: 8.85 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: -1.36 Total: 2.38 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: 0.20 Total: -53.43 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.07 Total: -8.51 kcal Atomic # 9 Polarization: -8.46 SS G_CDS: 0.15 Total: -8.31 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.32 -6.61 -36.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319651972.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -204.438 kcal (2) G-P(sol) polarization free energy of solvation -30.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -234.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -241.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds