Wall clock time and date at job start Tue Mar 31 2020 23:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86796 * 119.99993 * 2 1 4 4 H 1.48503 * 109.47327 * 239.99925 * 3 2 1 5 5 H 1.48505 * 109.47059 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47290 * 120.00169 * 3 2 1 7 7 C 1.38814 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99704 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99891 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99477 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46883 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.47314 * 295.00505 * 11 10 9 13 13 N 1.46498 * 109.46726 * 55.00397 * 11 10 9 14 14 C 1.34783 * 120.00018 * 205.00037 * 13 11 10 15 15 O 1.21285 * 119.99349 * 359.97438 * 14 13 11 16 16 C 1.50698 * 120.00276 * 179.97438 * 14 13 11 17 17 H 1.09001 * 109.46749 * 15.00328 * 16 14 13 18 18 F 1.39896 * 109.47278 * 254.99735 * 16 14 13 19 19 C 1.53001 * 109.47038 * 134.99957 * 16 14 13 20 20 F 1.39894 * 109.47284 * 59.99902 * 19 16 14 21 21 F 1.39894 * 109.47279 * 180.02562 * 19 16 14 22 22 F 1.39906 * 109.46907 * 299.99885 * 19 16 14 23 23 C 1.52996 * 109.47102 * 175.00371 * 11 10 9 24 24 C 1.53000 * 109.46955 * 299.99940 * 23 11 10 25 25 C 1.53005 * 109.47145 * 179.97438 * 24 23 11 26 26 C 1.52996 * 109.46840 * 60.00369 * 25 24 23 27 27 C 1.53003 * 109.47304 * 299.99756 * 26 25 24 28 28 C 1.52996 * 109.46951 * 180.02562 * 23 11 10 29 29 H 0.96993 * 120.00031 * 0.02562 * 1 2 3 30 30 H 0.96992 * 120.00556 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.46891 * 60.00526 * 10 9 7 32 32 H 1.08993 * 109.47378 * 299.99898 * 10 9 7 33 33 H 0.96995 * 120.00562 * 24.99991 * 13 11 10 34 34 H 1.08997 * 109.47474 * 60.00037 * 23 11 10 35 35 H 1.08996 * 109.47552 * 300.00026 * 24 23 11 36 36 H 1.09002 * 109.47044 * 60.00129 * 24 23 11 37 37 H 1.08997 * 109.47396 * 300.00165 * 25 24 23 38 38 H 1.09006 * 109.47013 * 179.97438 * 25 24 23 39 39 H 1.08998 * 109.47140 * 180.02562 * 26 25 24 40 40 H 1.08997 * 109.47293 * 59.99733 * 26 25 24 41 41 H 1.09001 * 109.46679 * 300.00652 * 27 26 25 42 42 H 1.08992 * 109.47399 * 180.02562 * 27 26 25 43 43 H 1.08993 * 109.47243 * 299.99585 * 28 23 11 44 44 H 1.08996 * 109.47312 * 60.00123 * 28 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6568 -0.0017 11 6 1.0639 -4.8198 -0.0021 12 1 0.4980 -4.8143 0.9295 13 7 0.1441 -4.6753 -1.1331 14 6 -1.0804 -5.2362 -1.0818 15 8 -1.4205 -5.8608 -0.0993 16 6 -2.0269 -5.0872 -2.2450 17 1 -1.4761 -4.7404 -3.1193 18 9 -3.0211 -4.1578 -1.9211 19 6 -2.6735 -6.4393 -2.5528 20 9 -3.3802 -6.8845 -1.4306 21 9 -3.5516 -6.3011 -3.6330 22 9 -1.6792 -7.3687 -2.8767 23 6 1.8247 -6.1411 -0.1289 24 6 2.6190 -6.1487 -1.4365 25 6 3.3804 -7.4698 -1.5631 26 6 2.3866 -8.6331 -1.5633 27 6 1.5922 -8.6255 -0.2556 28 6 0.8304 -7.3039 -0.1299 29 1 -0.4850 0.8400 -0.0004 30 1 0.3557 -2.3881 -0.0005 31 1 2.6854 -3.7149 0.8879 32 1 2.6841 -3.7141 -0.8921 33 1 0.4162 -4.1761 -1.9189 34 1 2.5091 -6.2485 0.7126 35 1 1.9347 -6.0413 -2.2780 36 1 3.3273 -5.3202 -1.4362 37 1 4.0648 -7.5768 -0.7216 38 1 3.9459 -7.4754 -2.4949 39 1 2.9289 -9.5743 -1.6530 40 1 1.7021 -8.5261 -2.4048 41 1 2.2767 -8.7324 0.5859 42 1 0.8845 -9.4545 -0.2556 43 1 0.2642 -7.2987 0.8014 44 1 0.1464 -7.1963 -0.9716 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319651972.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:56 Heat of formation + Delta-G solvation = -259.307684 kcal Electronic energy + Delta-G solvation = -32382.168734 eV Core-core repulsion = 27446.811911 eV Total energy + Delta-G solvation = -4935.356823 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.151 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -51.47417 -49.54676 -48.85732 -48.69948 -41.54332 -39.24719 -37.22379 -35.42844 -33.48074 -32.41311 -31.59968 -31.45763 -28.64511 -26.01545 -25.22236 -23.97552 -22.96692 -22.48869 -21.41490 -20.49893 -20.15790 -19.92756 -19.55191 -19.10484 -18.43915 -17.75771 -17.01223 -16.80371 -16.35552 -16.04047 -15.77959 -15.66775 -15.60350 -15.38131 -15.28411 -15.23265 -15.04990 -14.96537 -14.94778 -14.83328 -14.73430 -14.43787 -14.04299 -13.87141 -13.46029 -13.20811 -12.89603 -12.76734 -12.70337 -12.60773 -12.27562 -12.07371 -11.98629 -11.91204 -11.75288 -11.35775 -11.26197 -11.06143 -10.95016 -10.69752 -10.06577 -8.98013 -7.92057 -5.21393 0.85156 1.14576 1.50697 1.52439 1.58566 1.70546 2.22700 2.57752 2.67362 2.75774 3.17233 3.35011 3.42887 3.60018 3.68767 3.77915 3.89432 4.12560 4.18415 4.28221 4.49081 4.50766 4.58426 4.67514 4.71727 4.74788 4.83664 4.89509 5.04871 5.16097 5.22885 5.27715 5.33380 5.35669 5.39787 5.49291 5.53840 5.57504 5.65517 6.20608 6.28277 6.84734 7.36279 8.09546 8.32215 9.30433 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.009901 B = 0.004481 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2827.455028 B = 6246.931233 C = 8405.640160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.071 4.071 3 Si 0.969 3.031 4 H -0.275 1.275 5 H -0.301 1.301 6 H -0.282 1.282 7 C -0.242 4.242 8 H 0.080 0.920 9 N -0.743 5.743 10 C 0.145 3.855 11 C 0.152 3.848 12 H 0.063 0.937 13 N -0.678 5.678 14 C 0.492 3.508 15 O -0.530 6.530 16 C 0.038 3.962 17 H 0.187 0.813 18 F -0.165 7.165 19 C 0.451 3.549 20 F -0.171 7.171 21 F -0.165 7.165 22 F -0.162 7.162 23 C -0.085 4.085 24 C -0.114 4.114 25 C -0.114 4.114 26 C -0.116 4.116 27 C -0.117 4.117 28 C -0.102 4.102 29 H 0.249 0.751 30 H 0.374 0.626 31 H 0.036 0.964 32 H 0.053 0.947 33 H 0.416 0.584 34 H 0.086 0.914 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.055 0.945 41 H 0.065 0.935 42 H 0.056 0.944 43 H 0.044 0.956 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.502 -17.993 -8.483 20.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.264 4.264 3 Si 0.799 3.201 4 H -0.201 1.201 5 H -0.228 1.228 6 H -0.208 1.208 7 C -0.373 4.373 8 H 0.098 0.902 9 N -0.386 5.386 10 C 0.018 3.982 11 C 0.048 3.952 12 H 0.081 0.919 13 N -0.330 5.330 14 C 0.273 3.727 15 O -0.406 6.406 16 C -0.002 4.002 17 H 0.204 0.796 18 F -0.145 7.145 19 C 0.396 3.604 20 F -0.153 7.153 21 F -0.146 7.146 22 F -0.144 7.144 23 C -0.104 4.104 24 C -0.151 4.151 25 C -0.151 4.151 26 C -0.153 4.153 27 C -0.154 4.154 28 C -0.140 4.140 29 H 0.058 0.942 30 H 0.206 0.794 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.253 0.747 34 H 0.104 0.896 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.063 0.937 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.405 -18.339 -7.762 20.059 hybrid contribution -0.535 1.353 -0.017 1.454 sum 1.870 -16.986 -7.779 18.776 Atomic orbital electron populations 1.69812 1.06594 1.26003 1.59396 1.25501 0.96202 1.00930 1.03755 0.85275 0.77153 0.79501 0.78168 1.20058 1.22769 1.20804 1.19563 0.91566 0.85045 1.41168 0.90234 1.42523 1.05599 1.00939 1.89569 1.21196 0.93407 0.83592 0.99977 1.21269 0.89937 0.95458 0.88583 0.91852 1.45806 1.13257 1.52586 1.21324 1.20198 0.83278 0.80923 0.88283 1.90819 1.75743 1.40935 1.33105 1.22969 0.88226 0.85929 1.03118 0.79559 1.93016 1.61786 1.65264 1.94468 1.20318 0.77723 0.87299 0.75093 1.93273 1.79428 1.90566 1.51994 1.93254 1.70064 1.95839 1.55483 1.93246 1.60686 1.67840 1.92579 1.21467 0.96887 0.92057 1.00026 1.21632 0.98852 0.98388 0.96241 1.21501 0.97571 0.93732 1.02315 1.21517 0.97970 0.98803 0.97028 1.21545 0.98855 0.96476 0.98558 1.21554 0.96926 0.94421 1.01092 0.94192 0.79443 0.94617 0.92955 0.74666 0.89565 0.91872 0.91108 0.91684 0.91036 0.91167 0.92583 0.91672 0.92514 0.93711 0.93124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.35 13.06 21.65 0.28 -57.07 16 2 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 3 Si 0.97 44.34 29.55 68.60 2.03 46.37 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 6 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 7 C -0.24 -12.51 9.99 84.03 0.84 -11.67 16 8 H 0.08 3.90 7.83 -2.91 -0.02 3.88 16 9 N -0.74 -34.16 5.43 -343.43 -1.87 -36.02 16 10 C 0.14 4.91 5.60 86.38 0.48 5.39 16 11 C 0.15 4.45 2.16 44.99 0.10 4.55 16 12 H 0.06 2.25 7.58 -2.39 -0.02 2.23 16 13 N -0.68 -18.35 3.64 -442.52 -1.61 -19.96 16 14 C 0.49 14.25 5.26 87.66 0.46 14.71 16 15 O -0.53 -18.65 12.73 -3.04 -0.04 -18.68 16 16 C 0.04 0.90 3.78 29.85 0.11 1.02 16 17 H 0.19 2.63 7.99 -2.39 -0.02 2.62 16 18 F -0.16 -4.89 17.03 44.97 0.77 -4.13 16 19 C 0.45 10.69 2.86 71.98 0.21 10.90 16 20 F -0.17 -5.02 15.95 44.97 0.72 -4.30 16 21 F -0.17 -3.65 17.30 44.97 0.78 -2.87 16 22 F -0.16 -3.55 16.92 44.97 0.76 -2.79 16 23 C -0.08 -1.96 2.07 -10.80 -0.02 -1.98 16 24 C -0.11 -2.18 4.70 30.60 0.14 -2.04 16 25 C -0.11 -1.84 5.92 30.59 0.18 -1.65 16 26 C -0.12 -1.93 5.92 30.59 0.18 -1.75 16 27 C -0.12 -2.30 5.93 30.62 0.18 -2.12 16 28 C -0.10 -2.51 3.73 30.61 0.11 -2.39 16 29 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 30 H 0.37 18.86 7.33 -92.71 -0.68 18.18 16 31 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.05 1.61 6.17 -2.39 -0.01 1.60 16 33 H 0.42 9.93 8.49 -92.71 -0.79 9.15 16 34 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.06 1.18 7.60 -2.39 -0.02 1.16 16 36 H 0.07 1.38 6.32 -2.39 -0.02 1.37 16 37 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 39 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.04 1.31 7.53 -2.39 -0.02 1.29 16 44 H 0.05 1.32 5.67 -2.39 -0.01 1.31 16 Total: -1.00 -65.39 362.32 4.85 -60.54 By element: Atomic # 1 Polarization: 29.81 SS G_CDS: -0.41 Total: 29.39 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: 3.45 Total: 9.52 kcal Atomic # 7 Polarization: -109.86 SS G_CDS: -3.19 Total: -113.06 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.04 Total: -18.68 kcal Atomic # 9 Polarization: -17.11 SS G_CDS: 3.02 Total: -14.08 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -65.39 4.85 -60.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319651972.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -198.765 kcal (2) G-P(sol) polarization free energy of solvation -65.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -264.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -259.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds