Wall clock time and date at job start Wed Apr 1 2020 00:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99698 * 2 1 4 4 H 1.48500 * 109.46967 * 269.99860 * 3 2 1 5 5 H 1.48502 * 109.47094 * 29.99719 * 3 2 1 6 6 H 1.48496 * 109.47013 * 149.99884 * 3 2 1 7 7 C 1.37877 * 120.00036 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99729 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99954 * 0.02562 * 7 2 1 10 10 C 1.53036 * 109.45796 * 180.02562 * 9 7 2 11 11 C 1.53189 * 109.31189 * 178.62589 * 10 9 7 12 12 N 1.46925 * 108.77382 * 54.63674 * 11 10 9 13 13 C 1.34781 * 120.63155 * 126.37044 * 12 11 10 14 14 O 1.21347 * 120.00163 * 1.94562 * 13 12 11 15 15 C 1.49449 * 119.99904 * 181.95575 * 13 12 11 16 16 O 1.21345 * 119.99955 * 353.06452 * 15 13 12 17 17 N 1.34774 * 120.00131 * 173.07140 * 15 13 12 18 18 C 1.46498 * 120.00522 * 179.72398 * 17 15 13 19 19 C 1.52995 * 109.47546 * 180.27194 * 18 17 15 20 20 C 1.52579 * 109.22639 * 296.23651 * 19 18 17 21 21 C 1.53094 * 109.95871 * 169.00478 * 20 19 18 22 22 S 1.81753 * 108.84170 * 63.02056 * 21 20 19 23 23 C 1.81743 * 102.22097 * 306.73586 * 22 21 20 24 24 C 1.52585 * 109.22919 * 174.99741 * 19 18 17 25 25 C 1.46924 * 118.73764 * 306.63885 * 12 11 10 26 26 C 1.52765 * 109.00767 * 53.31607 * 25 12 11 27 27 H 0.97004 * 120.00363 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.45796 * 299.96863 * 9 7 2 29 29 H 1.09001 * 109.49983 * 58.67268 * 10 9 7 30 30 H 1.09003 * 109.52523 * 298.59527 * 10 9 7 31 31 H 1.08996 * 109.59077 * 294.84611 * 11 10 9 32 32 H 1.09006 * 109.70238 * 174.48609 * 11 10 9 33 33 H 0.97002 * 120.00114 * 359.97438 * 17 15 13 34 34 H 1.09003 * 109.46824 * 300.27512 * 18 17 15 35 35 H 1.08999 * 109.47240 * 60.26761 * 18 17 15 36 36 H 1.09002 * 109.22267 * 55.59533 * 19 18 17 37 37 H 1.09004 * 109.38895 * 289.15184 * 20 19 18 38 38 H 1.08998 * 109.39154 * 48.85190 * 20 19 18 39 39 H 1.08999 * 109.57385 * 303.21551 * 21 20 19 40 40 H 1.09000 * 109.58045 * 182.83132 * 21 20 19 41 41 H 1.09001 * 109.57975 * 293.45549 * 23 22 21 42 42 H 1.09004 * 109.57796 * 173.07408 * 23 22 21 43 43 H 1.09007 * 109.38848 * 311.14688 * 24 19 18 44 44 H 1.08998 * 109.39066 * 70.94182 * 24 19 18 45 45 H 1.09000 * 109.58549 * 173.14264 * 25 12 11 46 46 H 1.09000 * 109.59086 * 293.57106 * 25 12 11 47 47 H 1.08994 * 109.56421 * 185.55416 * 26 25 12 48 48 H 1.08994 * 109.38600 * 65.51203 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5465 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2457 -3.6621 0.0018 11 6 1.4767 -4.9865 0.0365 12 7 0.5234 -5.0092 -1.0813 13 6 0.5139 -6.0353 -1.9551 14 8 1.2736 -6.9692 -1.8026 15 6 -0.4322 -6.0229 -3.1119 16 8 -1.2762 -5.1551 -3.1962 17 7 -0.3481 -6.9755 -4.0615 18 6 -1.2794 -6.9669 -5.1924 19 6 -0.9745 -8.1501 -6.1132 20 6 0.4230 -7.9817 -6.7019 21 6 0.8545 -9.2732 -7.4015 22 16 -0.2737 -9.5939 -8.7899 23 6 -1.9021 -9.5292 -7.9852 24 6 -2.0233 -8.2088 -7.2200 25 6 -0.4154 -3.8890 -1.2318 26 6 0.3711 -2.5795 -1.2491 27 1 -0.4851 0.8400 -0.0004 28 1 0.6245 -2.5567 0.8907 29 1 2.8875 -3.5910 0.8800 30 1 2.8569 -3.6198 -0.8998 31 1 0.9364 -5.0709 0.9794 32 1 2.1737 -5.8189 -0.0610 33 1 0.3267 -7.6691 -3.9943 34 1 -2.3013 -7.0485 -4.8221 35 1 -1.1676 -6.0359 -5.7480 36 1 -1.0109 -9.0735 -5.5350 37 1 0.4157 -7.1645 -7.4232 38 1 1.1270 -7.7505 -5.9025 39 1 0.8105 -10.1030 -6.6960 40 1 1.8723 -9.1634 -7.7759 41 1 -1.9999 -10.3639 -7.2912 42 1 -2.6855 -9.5865 -8.7410 43 1 -3.0180 -8.1353 -6.7802 44 1 -1.8698 -7.3778 -7.9084 45 1 -0.9648 -3.9959 -2.1671 46 1 -1.1132 -3.8819 -0.3945 47 1 -0.3214 -1.7380 -1.2612 48 1 0.9994 -2.5466 -2.1392 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323671000.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:06:59 Heat of formation + Delta-G solvation = -72.491614 kcal Electronic energy + Delta-G solvation = -27768.929119 eV Core-core repulsion = 23949.743165 eV Total energy + Delta-G solvation = -3819.185954 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.77913 -38.96600 -37.90115 -37.01446 -34.55876 -33.39828 -32.01438 -31.23045 -30.08020 -29.57314 -26.69255 -25.21783 -23.81749 -23.45709 -22.42196 -21.86307 -20.97660 -20.23446 -18.93431 -17.50119 -17.26467 -16.83771 -16.35894 -15.94409 -15.68517 -15.27285 -15.06313 -14.75235 -14.53816 -14.37338 -14.23967 -13.85740 -13.77739 -13.34251 -13.24648 -13.01933 -12.89512 -12.80037 -12.55883 -12.30786 -11.94507 -11.79265 -11.70390 -11.42537 -11.31664 -10.95127 -10.86269 -10.85297 -10.59785 -10.36913 -10.12065 -10.07898 -9.72433 -9.40835 -9.24084 -9.18585 -8.53389 -8.32768 -8.10559 -8.10166 -6.01030 -4.07602 1.34214 1.57610 2.10176 2.44697 3.28983 3.36012 3.37894 3.39183 3.69900 3.99559 4.13372 4.27422 4.41805 4.46912 4.50207 4.70332 4.70842 4.89064 4.99391 5.10385 5.22850 5.27598 5.28648 5.40380 5.42546 5.49707 5.59491 5.62814 5.76170 5.82735 5.87621 6.03211 6.09003 6.23555 6.45339 6.60310 6.71263 6.79228 6.95657 7.06633 7.15366 7.29575 7.65877 7.77549 7.87616 7.95242 8.07226 8.22240 8.41656 8.95613 9.57241 11.04402 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019693 B = 0.002146 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.468715 B =13042.393555 C =13432.155393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.513 4.513 8 H 0.054 0.946 9 C 0.045 3.955 10 C -0.122 4.122 11 C 0.106 3.894 12 N -0.558 5.558 13 C 0.498 3.502 14 O -0.548 6.548 15 C 0.511 3.489 16 O -0.500 6.500 17 N -0.705 5.705 18 C 0.123 3.877 19 C -0.108 4.108 20 C -0.122 4.122 21 C -0.080 4.080 22 S -0.272 6.272 23 C -0.080 4.080 24 C -0.115 4.115 25 C 0.044 3.956 26 C -0.121 4.121 27 H 0.260 0.740 28 H 0.027 0.973 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.411 0.589 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.107 0.893 41 H 0.084 0.916 42 H 0.106 0.894 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.142 0.858 46 H 0.059 0.941 47 H 0.105 0.895 48 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.231 -19.240 -13.918 24.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.551 4.551 8 H 0.073 0.927 9 C 0.027 3.973 10 C -0.160 4.160 11 C -0.016 4.016 12 N -0.288 5.288 13 C 0.280 3.720 14 O -0.428 6.428 15 C 0.294 3.706 16 O -0.376 6.376 17 N -0.359 5.359 18 C 0.000 4.000 19 C -0.127 4.127 20 C -0.161 4.161 21 C -0.228 4.228 22 S -0.046 6.046 23 C -0.228 4.228 24 C -0.154 4.154 25 C -0.076 4.076 26 C -0.159 4.159 27 H 0.070 0.930 28 H 0.045 0.955 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.247 0.753 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.103 0.897 40 H 0.125 0.875 41 H 0.103 0.897 42 H 0.125 0.875 43 H 0.099 0.901 44 H 0.101 0.899 45 H 0.158 0.842 46 H 0.078 0.922 47 H 0.123 0.877 48 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -4.356 -19.150 -14.952 24.683 hybrid contribution 0.536 0.900 1.383 1.735 sum -3.821 -18.250 -13.569 23.060 Atomic orbital electron populations 1.69845 1.05836 1.26460 1.50744 1.24966 0.94869 0.99051 0.95116 0.86619 0.79874 0.83575 0.78071 1.20744 1.21246 1.19992 1.21187 0.92877 0.90580 1.50462 0.92744 1.18690 0.92688 0.91610 0.94336 1.22013 0.98928 0.93978 1.01125 1.21900 0.91786 1.00127 0.87763 1.48268 1.34853 1.20052 1.25673 1.19822 0.84477 0.83761 0.83910 1.90691 1.41808 1.34929 1.75334 1.20428 0.84911 0.81691 0.83612 1.90389 1.36619 1.34472 1.76135 1.45802 1.36442 1.30145 1.23519 1.21474 0.93438 0.98799 0.86285 1.21403 0.95603 0.99081 0.96579 1.21847 0.96141 0.97236 1.00917 1.23462 1.00783 1.00640 0.97901 1.87009 1.03641 1.94614 1.19316 1.23436 0.96228 1.00578 1.02535 1.21691 0.99338 0.97220 0.97180 1.23450 0.91873 0.86067 1.06213 1.21904 0.99961 0.95087 0.98960 0.92957 0.95453 0.91856 0.92905 0.91509 0.90133 0.75255 0.90575 0.90456 0.90088 0.89953 0.90212 0.89683 0.87513 0.89748 0.87539 0.90062 0.89938 0.84215 0.92231 0.87673 0.94611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.87 11.31 55.43 0.63 -24.25 16 2 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 3 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.51 -13.81 8.56 -34.44 -0.29 -14.10 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.05 1.09 2.07 -91.73 -0.19 0.91 16 10 C -0.12 -2.50 5.30 -26.61 -0.14 -2.64 16 11 C 0.11 1.91 6.43 -3.71 -0.02 1.89 16 12 N -0.56 -10.32 2.98 -173.54 -0.52 -10.84 16 13 C 0.50 8.54 7.76 -11.58 -0.09 8.45 16 14 O -0.55 -9.79 15.91 5.50 0.09 -9.70 16 15 C 0.51 7.60 7.80 -11.59 -0.09 7.51 16 16 O -0.50 -8.43 13.02 5.50 0.07 -8.36 16 17 N -0.70 -7.55 5.14 -60.74 -0.31 -7.86 16 18 C 0.12 1.02 5.03 -4.05 -0.02 1.00 16 19 C -0.11 -0.64 1.98 -91.05 -0.18 -0.82 16 20 C -0.12 -0.78 5.00 -26.90 -0.13 -0.91 16 21 C -0.08 -0.50 6.45 37.21 0.24 -0.26 16 22 S -0.27 -2.07 22.33 -107.50 -2.40 -4.47 16 23 C -0.08 -0.43 6.45 37.21 0.24 -0.19 16 24 C -0.11 -0.60 5.05 -26.89 -0.14 -0.74 16 25 C 0.04 0.87 6.20 -3.93 -0.02 0.84 16 26 C -0.12 -2.80 5.14 -26.83 -0.14 -2.94 16 27 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 28 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.08 1.38 7.01 -51.93 -0.36 1.02 16 33 H 0.41 3.91 7.07 -40.82 -0.29 3.63 16 34 H 0.08 0.64 8.09 -51.93 -0.42 0.22 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.08 0.46 8.08 -51.93 -0.42 0.04 16 37 H 0.08 0.57 8.06 -51.93 -0.42 0.15 16 38 H 0.08 0.53 6.85 -51.93 -0.36 0.17 16 39 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.11 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.11 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.08 0.36 8.05 -51.93 -0.42 -0.06 16 44 H 0.08 0.47 8.06 -51.93 -0.42 0.06 16 45 H 0.14 2.73 3.79 -56.98 -0.22 2.51 16 46 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 47 H 0.11 2.72 6.03 -51.93 -0.31 2.41 16 48 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 382.76 15.07 5.77 5.77 Total: -1.00 -29.98 382.76 -10.60 -40.58 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -7.82 Total: 3.51 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: -1.08 Total: -0.42 kcal Atomic # 7 Polarization: -42.75 SS G_CDS: -0.20 Total: -42.95 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: 0.16 Total: -18.06 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: -2.07 SS G_CDS: -2.40 Total: -4.47 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -29.98 -10.60 -40.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323671000.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.911 kcal (2) G-P(sol) polarization free energy of solvation -29.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds