Wall clock time and date at job start Tue Mar 31 2020 22:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99770 * 2 1 4 4 H 1.48503 * 109.47118 * 269.99699 * 3 2 1 5 5 H 1.48505 * 109.47509 * 29.99574 * 3 2 1 6 6 H 1.48498 * 109.47170 * 149.99657 * 3 2 1 7 7 C 1.38811 * 120.00387 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99553 * 0.02562 * 7 2 1 9 9 N 1.36935 * 120.00139 * 180.02562 * 7 2 1 10 10 C 1.46496 * 119.99757 * 179.97438 * 9 7 2 11 11 C 1.53007 * 109.47191 * 180.02562 * 10 9 7 12 12 H 1.08995 * 109.50738 * 305.10841 * 11 10 9 13 13 C 1.53293 * 109.51494 * 185.00049 * 11 10 9 14 14 N 1.47151 * 108.38589 * 187.77398 * 13 11 10 15 15 C 1.34778 * 120.98292 * 230.51662 * 14 13 11 16 16 O 1.21560 * 119.99521 * 174.23483 * 15 14 13 17 17 C 1.47775 * 119.99850 * 354.23168 * 15 14 13 18 18 C 1.40655 * 119.74167 * 141.13882 * 17 15 14 19 19 C 1.35722 * 120.83925 * 179.97438 * 18 17 15 20 20 C 1.40706 * 120.02603 * 0.02562 * 19 18 17 21 21 C 1.40487 * 121.04582 * 180.02562 * 20 19 18 22 22 C 1.36132 * 119.71929 * 179.97438 * 21 20 19 23 23 C 1.39367 * 121.01273 * 0.04589 * 22 21 20 24 24 C 1.36092 * 120.95284 * 359.95288 * 23 22 21 25 25 C 1.40652 * 119.65993 * 0.02562 * 24 23 22 26 26 C 1.38486 * 119.74689 * 320.86415 * 17 15 14 27 27 C 1.47156 * 118.03298 * 50.53527 * 14 13 11 28 28 C 1.53298 * 108.38681 * 309.46601 * 27 14 13 29 29 O 1.42963 * 109.50681 * 65.25531 * 11 10 9 30 30 H 0.97003 * 120.00316 * 0.02562 * 1 2 3 31 31 H 0.96997 * 119.99833 * 0.02562 * 9 7 2 32 32 H 1.09000 * 109.46992 * 60.00637 * 10 9 7 33 33 H 1.09003 * 109.47582 * 300.00517 * 10 9 7 34 34 H 1.09006 * 109.68081 * 68.05217 * 13 11 10 35 35 H 1.09002 * 109.68219 * 307.50367 * 13 11 10 36 36 H 1.07997 * 119.58263 * 359.97438 * 18 17 15 37 37 H 1.08003 * 119.98903 * 179.97438 * 19 18 17 38 38 H 1.08000 * 120.13711 * 359.95537 * 21 20 19 39 39 H 1.08007 * 119.49777 * 179.97438 * 22 21 20 40 40 H 1.07998 * 119.52180 * 179.97438 * 23 22 21 41 41 H 1.07997 * 120.16898 * 180.02562 * 24 23 22 42 42 H 1.07998 * 120.28044 * 0.02562 * 26 17 15 43 43 H 1.09003 * 109.68018 * 69.19074 * 27 14 13 44 44 H 1.08995 * 109.67971 * 189.74033 * 27 14 13 45 45 H 1.09001 * 109.51172 * 172.22654 * 28 27 14 46 46 H 1.08996 * 109.50903 * 292.37929 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2020 0.0011 10 6 4.1122 -2.4707 0.0022 11 6 5.6165 -2.1912 0.0032 12 1 5.8670 -1.5441 -0.8373 13 6 6.3830 -3.5128 -0.1215 14 7 7.8160 -3.2381 0.0698 15 6 8.7320 -3.6861 -0.8115 16 8 9.8976 -3.3615 -0.6943 17 6 8.3194 -4.5719 -1.9200 18 6 8.8980 -4.4134 -3.1922 19 6 8.5359 -5.2148 -4.2260 20 6 7.5700 -6.2196 -4.0331 21 6 7.1797 -7.0615 -5.0878 22 6 6.2430 -8.0252 -4.8709 23 6 5.6612 -8.1914 -3.6154 24 6 6.0138 -7.3952 -2.5696 25 6 6.9786 -6.3887 -2.7554 26 6 7.3702 -5.5553 -1.6969 27 6 8.2192 -2.4601 1.2520 28 6 7.3632 -1.1897 1.3099 29 8 5.9818 -1.5488 1.2271 30 1 -0.4851 0.8400 -0.0004 31 1 3.8646 -0.3620 0.0014 32 1 3.8493 -3.0428 -0.8876 33 1 3.8485 -3.0418 0.8924 34 1 6.2200 -3.9397 -1.1112 35 1 6.0379 -4.2108 0.6413 36 1 9.6398 -3.6442 -3.3485 37 1 8.9888 -5.0808 -5.1973 38 1 7.6207 -6.9444 -6.0667 39 1 5.9453 -8.6703 -5.6844 40 1 4.9201 -8.9635 -3.4703 41 1 5.5551 -7.5353 -1.6020 42 1 6.9313 -5.6763 -0.7176 43 1 8.0590 -3.0521 2.1531 44 1 9.2721 -2.1900 1.1720 45 1 7.5482 -0.6685 2.2492 46 1 7.6208 -0.5388 0.4745 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327066027.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:17 Heat of formation + Delta-G solvation = -25.898752 kcal Electronic energy + Delta-G solvation = -29157.522255 eV Core-core repulsion = 25204.912767 eV Total energy + Delta-G solvation = -3952.609488 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.00299 -40.88485 -39.60668 -37.23220 -36.75157 -35.97338 -34.09508 -33.71775 -32.35499 -31.50567 -30.44197 -29.29894 -27.40392 -25.50955 -24.79071 -24.15943 -23.43118 -22.95464 -22.41885 -20.79502 -19.76268 -18.91111 -18.12498 -18.10475 -17.63215 -17.21950 -16.74729 -16.51170 -16.41658 -16.18064 -15.72808 -15.55566 -15.44011 -14.88847 -14.79178 -14.58314 -14.50407 -14.35197 -14.24325 -14.09834 -13.94777 -13.69901 -13.21869 -12.99220 -12.88478 -12.68438 -12.37960 -12.24881 -12.19924 -12.07013 -11.86281 -11.79904 -11.69241 -11.28571 -11.10066 -11.00422 -10.86941 -9.79811 -9.59844 -9.30259 -8.87766 -8.02294 -5.35162 -0.63008 -0.13972 0.96773 1.38198 1.39604 1.40487 1.48361 1.64349 2.13603 2.48752 2.66839 3.10166 3.19297 3.30261 3.37147 3.59476 3.79408 3.84078 3.89500 3.93929 3.97951 4.07564 4.08895 4.18168 4.22257 4.31887 4.34205 4.39652 4.43059 4.51216 4.57854 4.65018 4.76242 4.78848 4.90377 4.92413 5.01321 5.05498 5.10983 5.22827 5.26030 5.33427 5.57909 5.59592 5.75221 5.76564 6.02256 6.08823 6.13425 6.21941 6.85733 7.07648 7.83644 8.01785 9.18915 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010159 B = 0.003328 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2755.643980 B = 8412.158227 C =10252.358605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.982 5.982 2 C -0.060 4.060 3 Si 0.949 3.051 4 H -0.278 1.278 5 H -0.295 1.295 6 H -0.257 1.257 7 C -0.232 4.232 8 H 0.064 0.936 9 N -0.756 5.756 10 C 0.164 3.836 11 C 0.076 3.924 12 H 0.056 0.944 13 C 0.081 3.919 14 N -0.607 5.607 15 C 0.564 3.436 16 O -0.571 6.571 17 C -0.145 4.145 18 C -0.091 4.091 19 C -0.104 4.104 20 C -0.052 4.052 21 C -0.120 4.120 22 C -0.108 4.108 23 C -0.121 4.121 24 C -0.109 4.109 25 C -0.077 4.077 26 C -0.062 4.062 27 C 0.079 3.921 28 C 0.045 3.955 29 O -0.386 6.386 30 H 0.258 0.742 31 H 0.365 0.635 32 H 0.057 0.943 33 H 0.038 0.962 34 H 0.113 0.887 35 H 0.103 0.897 36 H 0.128 0.872 37 H 0.157 0.843 38 H 0.150 0.850 39 H 0.150 0.850 40 H 0.147 0.853 41 H 0.146 0.854 42 H 0.151 0.849 43 H 0.094 0.906 44 H 0.100 0.900 45 H 0.128 0.872 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.159 -16.841 -7.496 27.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.632 5.632 2 C -0.252 4.252 3 Si 0.777 3.223 4 H -0.204 1.204 5 H -0.221 1.221 6 H -0.182 1.182 7 C -0.363 4.363 8 H 0.082 0.918 9 N -0.401 5.401 10 C 0.038 3.962 11 C 0.017 3.983 12 H 0.074 0.926 13 C -0.042 4.042 14 N -0.339 5.339 15 C 0.354 3.646 16 O -0.451 6.451 17 C -0.148 4.148 18 C -0.110 4.110 19 C -0.122 4.122 20 C -0.052 4.052 21 C -0.138 4.138 22 C -0.126 4.126 23 C -0.139 4.139 24 C -0.127 4.127 25 C -0.077 4.077 26 C -0.081 4.081 27 C -0.043 4.043 28 C -0.032 4.032 29 O -0.305 6.305 30 H 0.067 0.933 31 H 0.198 0.802 32 H 0.075 0.925 33 H 0.056 0.944 34 H 0.131 0.869 35 H 0.121 0.879 36 H 0.146 0.854 37 H 0.175 0.825 38 H 0.168 0.832 39 H 0.167 0.833 40 H 0.165 0.835 41 H 0.164 0.836 42 H 0.168 0.832 43 H 0.112 0.888 44 H 0.119 0.881 45 H 0.146 0.854 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 20.452 -16.734 -7.261 27.405 hybrid contribution 0.248 1.357 0.025 1.380 sum 20.700 -15.377 -7.236 26.783 Atomic orbital electron populations 1.69866 1.06947 1.26628 1.59791 1.25420 0.96040 1.00982 1.02731 0.85483 0.78654 0.80116 0.78034 1.20442 1.22131 1.18181 1.19060 0.82425 0.93725 1.41092 0.91804 1.42613 1.02585 1.04012 1.90933 1.20772 0.87243 0.88251 0.99972 1.22660 0.94794 0.93598 0.87238 0.92575 1.22768 0.78693 0.97360 1.05339 1.48108 1.07142 1.53965 1.24674 1.18652 0.84724 0.79670 0.81546 1.90742 1.19240 1.60020 1.75133 1.19754 1.01141 0.99352 0.94553 1.20824 0.98924 0.99867 0.91347 1.21201 0.96840 0.94221 0.99916 1.18524 0.96437 0.96461 0.93788 1.21359 0.98389 0.95246 0.98794 1.21333 0.95495 0.97752 0.97991 1.21275 1.00033 0.99758 0.92843 1.21379 0.96202 0.94200 1.00931 1.18238 0.98627 0.97601 0.93265 1.21794 0.93713 0.92977 0.99596 1.22427 1.00902 0.93277 0.87647 1.23134 0.80733 0.95363 1.04014 1.88096 1.26017 1.78697 1.37640 0.93323 0.80205 0.92530 0.94358 0.86865 0.87922 0.85411 0.82526 0.83200 0.83265 0.83493 0.83600 0.83185 0.88794 0.88138 0.85424 0.93298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.98 13.97 21.65 0.30 -62.67 16 2 C -0.06 -3.56 5.50 84.86 0.47 -3.10 16 3 Si 0.95 46.34 27.74 68.60 1.90 48.24 16 4 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 5 H -0.29 -14.48 7.11 99.48 0.71 -13.78 16 6 H -0.26 -11.68 6.52 99.48 0.65 -11.03 16 7 C -0.23 -13.25 10.47 84.03 0.88 -12.37 16 8 H 0.06 3.91 8.06 -2.91 -0.02 3.89 16 9 N -0.76 -35.65 5.36 -343.44 -1.84 -37.49 16 10 C 0.16 5.93 5.93 86.38 0.51 6.44 16 11 C 0.08 2.23 2.81 30.69 0.09 2.31 16 12 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 13 C 0.08 1.80 4.28 86.35 0.37 2.17 16 14 N -0.61 -14.26 3.02 -820.82 -2.48 -16.74 16 15 C 0.56 14.91 7.33 86.77 0.64 15.55 16 16 O -0.57 -18.49 16.36 -3.90 -0.06 -18.55 16 17 C -0.15 -3.34 5.16 -20.11 -0.10 -3.44 16 18 C -0.09 -1.94 9.51 22.28 0.21 -1.73 16 19 C -0.10 -1.82 9.73 22.29 0.22 -1.60 16 20 C -0.05 -0.94 5.75 -21.25 -0.12 -1.06 16 21 C -0.12 -1.66 9.76 22.33 0.22 -1.44 16 22 C -0.11 -1.31 9.95 22.05 0.22 -1.09 16 23 C -0.12 -1.57 9.95 22.04 0.22 -1.35 16 24 C -0.11 -1.68 9.77 22.36 0.22 -1.46 16 25 C -0.08 -1.46 5.74 -21.31 -0.12 -1.58 16 26 C -0.06 -1.21 7.15 22.83 0.16 -1.05 16 27 C 0.08 1.70 6.65 86.35 0.57 2.27 16 28 C 0.04 1.04 6.99 72.08 0.50 1.54 16 29 O -0.39 -11.90 10.33 -148.98 -1.54 -13.44 16 30 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 31 H 0.37 17.00 5.53 -92.71 -0.51 16.49 16 32 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.11 2.32 4.95 -2.38 -0.01 2.31 16 35 H 0.10 1.94 8.01 -2.39 -0.02 1.92 16 36 H 0.13 2.69 8.03 -2.91 -0.02 2.67 16 37 H 0.16 1.82 8.06 -2.91 -0.02 1.79 16 38 H 0.15 1.31 8.06 -2.91 -0.02 1.28 16 39 H 0.15 1.00 8.06 -2.91 -0.02 0.98 16 40 H 0.15 1.21 8.06 -2.91 -0.02 1.19 16 41 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 42 H 0.15 2.38 6.39 -2.91 -0.02 2.37 16 43 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.10 2.19 7.06 -2.39 -0.02 2.17 16 45 H 0.13 2.37 8.14 -2.39 -0.02 2.35 16 46 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -76.83 375.41 1.86 -74.97 By element: Atomic # 1 Polarization: 26.24 SS G_CDS: 0.43 Total: 26.67 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: 5.15 Total: -0.98 kcal Atomic # 7 Polarization: -112.89 SS G_CDS: -4.02 Total: -116.91 kcal Atomic # 8 Polarization: -30.39 SS G_CDS: -1.60 Total: -31.99 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 1.90 Total: 48.24 kcal Total: -76.83 1.86 -74.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327066027.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.068 kcal (2) G-P(sol) polarization free energy of solvation -76.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds