Wall clock time and date at job start Tue Mar 31 2020 23:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00082 * 2 1 4 4 H 1.48501 * 109.47377 * 275.26390 * 3 2 1 5 5 H 1.48506 * 109.46919 * 35.26507 * 3 2 1 6 6 H 1.48507 * 109.47040 * 155.26041 * 3 2 1 7 7 C 1.37876 * 119.99755 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00319 * 355.10952 * 7 2 1 9 9 C 1.50701 * 120.00081 * 175.11381 * 7 2 1 10 10 H 1.09008 * 109.52182 * 334.69193 * 9 7 2 11 11 C 1.53036 * 109.50195 * 214.61625 * 9 7 2 12 12 C 1.53036 * 109.54194 * 178.67960 * 11 9 7 13 13 C 1.53198 * 109.30962 * 61.36502 * 12 11 9 14 14 N 1.46920 * 108.77531 * 305.36304 * 13 12 11 15 15 C 1.34783 * 120.63129 * 233.59114 * 14 13 12 16 16 O 1.21350 * 119.99760 * 187.07963 * 15 14 13 17 17 C 1.49449 * 119.99703 * 7.07433 * 15 14 13 18 18 O 1.21343 * 120.00290 * 6.39790 * 17 15 14 19 19 N 1.34776 * 119.99430 * 186.12042 * 17 15 14 20 20 C 1.46498 * 119.99707 * 180.02562 * 19 17 15 21 21 C 1.47204 * 109.47155 * 180.02562 * 20 19 17 22 22 C 9.84205 * 140.10063 * 325.13794 * 3 1 2 23 23 C 9.42760 * 160.11232 * 284.75316 * 6 1 2 24 24 C 1.39535 * 120.14137 * 183.39863 * 23 22 21 25 25 C 1.37974 * 119.85642 * 179.78985 * 24 23 22 26 26 C 1.38347 * 120.14235 * 0.46815 * 25 24 23 27 27 C 1.38345 * 120.28468 * 359.78448 * 26 25 24 28 28 C 1.37968 * 120.14115 * 359.97438 * 27 26 25 29 29 C 1.46928 * 118.73709 * 53.86435 * 14 13 12 30 30 H 0.96998 * 119.99969 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.45964 * 58.65588 * 11 9 7 32 32 H 1.09001 * 109.44602 * 298.69534 * 11 9 7 33 33 H 1.08997 * 109.50048 * 301.41197 * 12 11 9 34 34 H 1.09002 * 109.49792 * 181.31359 * 12 11 9 35 35 H 1.09000 * 109.58124 * 185.58129 * 13 12 11 36 36 H 1.08991 * 109.70436 * 65.22642 * 13 12 11 37 37 H 0.97002 * 120.00708 * 0.02562 * 19 17 15 38 38 H 1.09002 * 109.47620 * 300.00108 * 20 19 17 39 39 H 1.09000 * 109.47271 * 60.00488 * 20 19 17 40 40 H 1.08002 * 120.07366 * 0.02562 * 24 23 22 41 41 H 1.08002 * 119.93017 * 180.20660 * 25 24 23 42 42 H 1.07998 * 119.85374 * 179.76136 * 26 25 24 43 43 H 1.08003 * 119.92499 * 179.97438 * 27 26 25 44 44 H 1.07999 * 120.07112 * 179.97438 * 28 27 26 45 45 H 1.08994 * 109.58647 * 65.92613 * 29 14 13 46 46 H 1.09000 * 109.58352 * 186.35251 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3854 2.1106 -1.3942 5 1 1.5066 2.6180 0.8084 6 1 3.5979 1.4105 0.5860 7 6 2.0044 -1.1941 -0.0005 8 1 1.4674 -2.1277 0.0788 9 6 3.5073 -1.1965 -0.1117 10 1 3.8368 -0.2876 -0.6153 11 6 3.9582 -2.4180 -0.9159 12 6 5.4819 -2.4037 -1.0574 13 6 6.1206 -2.4777 0.3331 14 7 5.5811 -1.3895 1.1597 15 6 6.4076 -0.5295 1.7875 16 8 5.9580 0.2837 2.5680 17 6 7.8776 -0.5775 1.5223 18 8 8.3147 -1.3092 0.6585 19 7 8.7171 0.1959 2.2387 20 6 10.1581 0.1493 1.9784 21 6 10.8510 1.0784 2.8859 22 6 11.4035 1.8212 3.6086 23 6 12.0775 2.7258 4.4906 24 6 11.4150 3.8528 4.9785 25 6 12.0686 4.7181 5.8315 26 6 13.3811 4.4756 6.1955 27 6 14.0453 3.3629 5.7111 28 6 13.4014 2.4872 4.8614 29 6 4.1237 -1.2601 1.2940 30 1 -0.4850 0.8400 0.0004 31 1 3.5013 -2.3903 -1.9051 32 1 3.6500 -3.3267 -0.3989 33 1 5.7928 -1.4835 -1.5521 34 1 5.8003 -3.2614 -1.6501 35 1 7.2015 -2.3682 0.2450 36 1 5.8869 -3.4372 0.7943 37 1 8.3674 0.7835 2.9268 38 1 10.5251 -0.8633 2.1462 39 1 10.3502 0.4389 0.9454 40 1 10.3916 4.0452 4.6922 41 1 11.5559 5.5890 6.2125 42 1 13.8895 5.1582 6.8604 43 1 15.0700 3.1795 5.9987 44 1 13.9210 1.6191 4.4836 45 1 3.7283 -2.1225 1.8307 46 1 3.8867 -0.3471 1.8402 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328801721.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:23 Heat of formation + Delta-G solvation = 19.311597 kcal Electronic energy + Delta-G solvation = -27619.101807 eV Core-core repulsion = 23668.452787 eV Total energy + Delta-G solvation = -3950.649020 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.79493 -39.58954 -38.65052 -37.15253 -35.96314 -33.95543 -33.21533 -31.87108 -31.44019 -31.02244 -30.46910 -27.89582 -25.71224 -25.15228 -23.41199 -22.99108 -22.49440 -21.84000 -20.51196 -19.17015 -18.61571 -17.68379 -16.97889 -16.77925 -16.49916 -16.10894 -15.74353 -15.46240 -15.41428 -14.78636 -14.55719 -14.30841 -14.00741 -13.92862 -13.80373 -13.72974 -13.51045 -13.40263 -13.13320 -12.55291 -12.48277 -12.18684 -11.93073 -11.83916 -11.69751 -11.39216 -11.17341 -10.76893 -10.73933 -10.64515 -10.42711 -10.10426 -9.73018 -9.61436 -9.53370 -9.45883 -9.22095 -8.90029 -8.72779 -8.64847 -8.14336 -6.13941 -4.14544 0.42722 0.90465 1.49895 1.78258 2.40985 2.74251 3.28387 3.34476 3.38856 3.46819 3.49495 3.50160 3.76754 4.39958 4.42056 4.47145 4.47405 4.61106 4.80313 4.95178 5.04479 5.10844 5.12508 5.17470 5.44559 5.50568 5.52934 5.53676 5.67573 5.83860 5.91271 5.99191 6.00525 6.02612 6.20659 6.22647 6.41154 6.43637 6.49767 6.54957 6.63522 6.78973 6.84118 6.95283 7.01366 7.25133 7.33116 7.62397 7.71396 7.79532 8.21351 8.46392 8.91679 9.49258 10.98440 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015792 B = 0.002079 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.651811 B =13464.590282 C =14876.089716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.075 3.925 3 Si 0.870 3.130 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.257 1.257 7 C -0.513 4.513 8 H 0.076 0.924 9 C 0.008 3.992 10 H 0.035 0.965 11 C -0.106 4.106 12 C -0.131 4.131 13 C 0.050 3.950 14 N -0.568 5.568 15 C 0.496 3.504 16 O -0.531 6.531 17 C 0.516 3.484 18 O -0.508 6.508 19 N -0.703 5.703 20 C 0.235 3.765 21 C -0.172 4.172 22 C -0.109 4.109 23 C 0.010 3.990 24 C -0.093 4.093 25 C -0.118 4.118 26 C -0.111 4.111 27 C -0.120 4.120 28 C -0.095 4.095 29 C 0.107 3.893 30 H 0.265 0.735 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.146 0.854 36 H 0.060 0.940 37 H 0.417 0.583 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.129 0.871 41 H 0.129 0.871 42 H 0.126 0.874 43 H 0.128 0.872 44 H 0.127 0.873 45 H 0.068 0.932 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.460 4.103 8.895 30.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.128 4.128 3 Si 0.697 3.303 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.181 1.181 7 C -0.551 4.551 8 H 0.094 0.906 9 C -0.012 4.012 10 H 0.053 0.947 11 C -0.144 4.144 12 C -0.169 4.169 13 C -0.071 4.071 14 N -0.299 5.299 15 C 0.277 3.723 16 O -0.409 6.409 17 C 0.299 3.701 18 O -0.385 6.385 19 N -0.357 5.357 20 C 0.113 3.887 21 C -0.173 4.173 22 C -0.110 4.110 23 C 0.010 3.990 24 C -0.111 4.111 25 C -0.136 4.136 26 C -0.129 4.129 27 C -0.138 4.138 28 C -0.113 4.113 29 C -0.014 4.014 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.162 0.838 36 H 0.078 0.922 37 H 0.254 0.746 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.147 0.853 41 H 0.147 0.853 42 H 0.144 0.856 43 H 0.146 0.854 44 H 0.145 0.855 45 H 0.086 0.914 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 28.330 4.104 8.679 29.913 hybrid contribution 0.060 1.198 0.314 1.240 sum 28.390 5.302 8.993 30.249 Atomic orbital electron populations 1.69900 1.06339 1.27141 1.49715 1.25080 0.94704 0.99067 0.93924 0.86951 0.81153 0.83815 0.78393 1.20449 1.21259 1.18101 1.20901 0.88370 0.94695 1.51147 0.90583 1.19558 0.96368 0.94814 0.90464 0.94691 1.21598 0.92513 0.99507 1.00809 1.21917 0.97658 1.01491 0.95873 1.23143 1.04401 0.88658 0.90885 1.48471 1.08185 1.27930 1.45354 1.19764 0.86518 0.83251 0.82737 1.90746 1.77005 1.38230 1.34917 1.20636 0.88233 0.79874 0.81356 1.90333 1.77599 1.38506 1.32040 1.45833 1.06127 1.44170 1.39587 1.18160 0.77933 0.96476 0.96091 1.21929 1.00086 0.97422 0.97839 1.19186 0.97192 0.97382 0.97269 1.15918 0.93213 0.93300 0.96550 1.21293 1.00202 0.93070 0.96557 1.21142 0.95023 0.99601 0.97869 1.21330 0.94820 0.97372 0.99334 1.21111 1.00253 0.94773 0.97675 1.21236 0.93198 0.99555 0.97321 1.22835 0.74192 1.02542 1.01806 0.92520 0.92192 0.92792 0.92293 0.91717 0.83804 0.92154 0.74625 0.88081 0.88076 0.85286 0.85287 0.85614 0.85393 0.85470 0.91396 0.89809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.00 13.96 55.43 0.77 -26.23 16 2 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 3 Si 0.87 21.89 26.63 -169.99 -4.53 17.37 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.26 -6.43 5.97 56.52 0.34 -6.09 16 7 C -0.51 -14.02 8.86 -34.44 -0.31 -14.32 16 8 H 0.08 2.23 8.06 -52.49 -0.42 1.81 16 9 C 0.01 0.18 1.79 -91.43 -0.16 0.01 16 10 H 0.03 0.85 5.61 -51.92 -0.29 0.56 16 11 C -0.11 -2.07 5.15 -26.69 -0.14 -2.21 16 12 C -0.13 -2.14 6.08 -26.61 -0.16 -2.30 16 13 C 0.05 0.80 6.27 -3.71 -0.02 0.78 16 14 N -0.57 -10.67 2.97 -173.01 -0.51 -11.18 16 15 C 0.50 9.01 7.74 -11.58 -0.09 8.93 16 16 O -0.53 -10.90 15.94 5.50 0.09 -10.81 16 17 C 0.52 7.56 7.78 -11.59 -0.09 7.47 16 18 O -0.51 -7.60 13.10 5.50 0.07 -7.53 16 19 N -0.70 -8.23 5.53 -63.60 -0.35 -8.58 16 20 C 0.24 2.15 6.15 -6.83 -0.04 2.11 16 21 C -0.17 -1.67 13.46 -37.12 -0.50 -2.17 16 22 C -0.11 -1.09 13.24 -38.83 -0.51 -1.61 16 23 C 0.01 0.09 5.72 -107.00 -0.61 -0.52 16 24 C -0.09 -0.76 9.75 -39.19 -0.38 -1.14 16 25 C -0.12 -0.78 10.03 -39.64 -0.40 -1.17 16 26 C -0.11 -0.64 10.04 -39.50 -0.40 -1.04 16 27 C -0.12 -0.72 10.03 -39.64 -0.40 -1.12 16 28 C -0.10 -0.70 9.75 -39.20 -0.38 -1.09 16 29 C 0.11 2.31 5.52 -3.48 -0.02 2.29 16 30 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.15 2.21 3.78 -56.76 -0.21 1.99 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.42 4.81 7.94 -40.82 -0.32 4.48 16 38 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 41 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 42 H 0.13 0.45 8.06 -52.49 -0.42 0.02 16 43 H 0.13 0.47 8.06 -52.48 -0.42 0.05 16 44 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 45 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 46 H 0.08 2.00 5.94 -51.93 -0.31 1.69 16 LS Contribution 386.21 15.07 5.82 5.82 Total: -1.00 -32.48 386.21 -9.61 -42.09 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -6.26 Total: 4.12 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -4.71 Total: -5.06 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: -0.09 Total: -45.99 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: 0.16 Total: -18.34 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.53 Total: 17.37 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.48 -9.61 -42.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328801721.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.400 kcal (2) G-P(sol) polarization free energy of solvation -32.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds