Wall clock time and date at job start Tue Mar 31 2020 23:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00082 * 2 1 4 4 H 1.48501 * 109.47377 * 275.26390 * 3 2 1 5 5 H 1.48506 * 109.46919 * 35.26507 * 3 2 1 6 6 H 1.48507 * 109.47040 * 155.26041 * 3 2 1 7 7 C 1.37876 * 119.99755 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00319 * 355.10952 * 7 2 1 9 9 C 1.50701 * 120.00081 * 175.11381 * 7 2 1 10 10 H 1.09008 * 109.52182 * 334.69193 * 9 7 2 11 11 C 1.53036 * 109.50195 * 214.61625 * 9 7 2 12 12 C 1.53036 * 109.54194 * 178.67960 * 11 9 7 13 13 C 1.53198 * 109.30962 * 61.36502 * 12 11 9 14 14 N 1.46920 * 108.77531 * 305.36304 * 13 12 11 15 15 C 1.34783 * 120.63129 * 233.59114 * 14 13 12 16 16 O 1.21350 * 119.99760 * 187.07963 * 15 14 13 17 17 C 1.49449 * 119.99703 * 7.07433 * 15 14 13 18 18 O 1.21343 * 120.00290 * 6.39790 * 17 15 14 19 19 N 1.34776 * 119.99430 * 186.12042 * 17 15 14 20 20 C 1.46498 * 119.99707 * 180.02562 * 19 17 15 21 21 C 1.47204 * 109.47155 * 180.02562 * 20 19 17 22 22 C 9.84205 * 140.10063 * 325.13794 * 3 1 2 23 23 C 9.42760 * 160.11232 * 284.75316 * 6 1 2 24 24 C 1.39535 * 120.14137 * 183.39863 * 23 22 21 25 25 C 1.37974 * 119.85642 * 179.78985 * 24 23 22 26 26 C 1.38347 * 120.14235 * 0.46815 * 25 24 23 27 27 C 1.38345 * 120.28468 * 359.78448 * 26 25 24 28 28 C 1.37968 * 120.14115 * 359.97438 * 27 26 25 29 29 C 1.46928 * 118.73709 * 53.86435 * 14 13 12 30 30 H 0.96998 * 119.99969 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.45964 * 58.65588 * 11 9 7 32 32 H 1.09001 * 109.44602 * 298.69534 * 11 9 7 33 33 H 1.08997 * 109.50048 * 301.41197 * 12 11 9 34 34 H 1.09002 * 109.49792 * 181.31359 * 12 11 9 35 35 H 1.09000 * 109.58124 * 185.58129 * 13 12 11 36 36 H 1.08991 * 109.70436 * 65.22642 * 13 12 11 37 37 H 0.97002 * 120.00708 * 0.02562 * 19 17 15 38 38 H 1.09002 * 109.47620 * 300.00108 * 20 19 17 39 39 H 1.09000 * 109.47271 * 60.00488 * 20 19 17 40 40 H 1.08002 * 120.07366 * 0.02562 * 24 23 22 41 41 H 1.08002 * 119.93017 * 180.20660 * 25 24 23 42 42 H 1.07998 * 119.85374 * 179.76136 * 26 25 24 43 43 H 1.08003 * 119.92499 * 179.97438 * 27 26 25 44 44 H 1.07999 * 120.07112 * 179.97438 * 28 27 26 45 45 H 1.08994 * 109.58647 * 65.92613 * 29 14 13 46 46 H 1.09000 * 109.58352 * 186.35251 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3854 2.1106 -1.3942 5 1 1.5066 2.6180 0.8084 6 1 3.5979 1.4105 0.5860 7 6 2.0044 -1.1941 -0.0005 8 1 1.4674 -2.1277 0.0788 9 6 3.5073 -1.1965 -0.1117 10 1 3.8368 -0.2876 -0.6153 11 6 3.9582 -2.4180 -0.9159 12 6 5.4819 -2.4037 -1.0574 13 6 6.1206 -2.4777 0.3331 14 7 5.5811 -1.3895 1.1597 15 6 6.4076 -0.5295 1.7875 16 8 5.9580 0.2837 2.5680 17 6 7.8776 -0.5775 1.5223 18 8 8.3147 -1.3092 0.6585 19 7 8.7171 0.1959 2.2387 20 6 10.1581 0.1493 1.9784 21 6 10.8510 1.0784 2.8859 22 6 11.4035 1.8212 3.6086 23 6 12.0775 2.7258 4.4906 24 6 11.4150 3.8528 4.9785 25 6 12.0686 4.7181 5.8315 26 6 13.3811 4.4756 6.1955 27 6 14.0453 3.3629 5.7111 28 6 13.4014 2.4872 4.8614 29 6 4.1237 -1.2601 1.2940 30 1 -0.4850 0.8400 0.0004 31 1 3.5013 -2.3903 -1.9051 32 1 3.6500 -3.3267 -0.3989 33 1 5.7928 -1.4835 -1.5521 34 1 5.8003 -3.2614 -1.6501 35 1 7.2015 -2.3682 0.2450 36 1 5.8869 -3.4372 0.7943 37 1 8.3674 0.7835 2.9268 38 1 10.5251 -0.8633 2.1462 39 1 10.3502 0.4389 0.9454 40 1 10.3916 4.0452 4.6922 41 1 11.5559 5.5890 6.2125 42 1 13.8895 5.1582 6.8604 43 1 15.0700 3.1795 5.9987 44 1 13.9210 1.6191 4.4836 45 1 3.7283 -2.1225 1.8307 46 1 3.8867 -0.3471 1.8402 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328801721.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:22 Heat of formation + Delta-G solvation = -0.392160 kcal Electronic energy + Delta-G solvation = -27619.956226 eV Core-core repulsion = 23668.452787 eV Total energy + Delta-G solvation = -3951.503439 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.08055 -40.10377 -39.96262 -38.65835 -36.93581 -35.23471 -34.58776 -33.56669 -32.17008 -31.92779 -31.68984 -28.83092 -27.32778 -26.73607 -24.25559 -23.56656 -23.47662 -23.43375 -21.75695 -20.68280 -19.56500 -19.05925 -18.56687 -18.13064 -17.32574 -17.11109 -16.93801 -16.47992 -16.30476 -16.01706 -15.84168 -15.59033 -15.26227 -15.04737 -14.87879 -14.69838 -14.49288 -14.42245 -14.38766 -14.10990 -13.95202 -13.70454 -13.20836 -13.07368 -12.60259 -12.38796 -12.36176 -12.31839 -12.05293 -12.03718 -11.71026 -11.67932 -11.44337 -11.25723 -11.14859 -10.80662 -10.53281 -10.07173 -9.95892 -9.70401 -9.47500 -8.35872 -6.38506 -0.14083 0.22752 0.40662 0.87098 1.25311 1.32154 1.43266 1.60897 1.82876 2.03430 2.27848 2.53705 2.83340 2.95247 3.01796 3.20919 3.99831 4.01456 4.05037 4.12479 4.16408 4.23133 4.25327 4.40556 4.41931 4.45703 4.49534 4.54231 4.59525 4.66868 4.74543 4.84586 4.94906 4.99237 5.06464 5.08795 5.20010 5.27372 5.39160 5.42954 5.46291 5.52898 5.56262 5.60171 5.65091 5.86778 5.96839 6.24389 6.29130 6.29864 6.58956 6.70415 6.83308 7.27804 8.80422 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015792 B = 0.002079 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.651811 B =13464.590282 C =14876.089716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.269 1.269 5 H -0.286 1.286 6 H -0.257 1.257 7 C -0.510 4.510 8 H 0.044 0.956 9 C 0.006 3.994 10 H 0.024 0.976 11 C -0.103 4.103 12 C -0.123 4.123 13 C 0.050 3.950 14 N -0.574 5.574 15 C 0.489 3.511 16 O -0.561 6.561 17 C 0.527 3.473 18 O -0.508 6.508 19 N -0.690 5.690 20 C 0.238 3.762 21 C -0.183 4.183 22 C -0.116 4.116 23 C -0.019 4.019 24 C -0.110 4.110 25 C -0.125 4.125 26 C -0.109 4.109 27 C -0.122 4.122 28 C -0.103 4.103 29 C 0.117 3.883 30 H 0.267 0.733 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.100 0.900 35 H 0.160 0.840 36 H 0.076 0.924 37 H 0.418 0.582 38 H 0.120 0.880 39 H 0.114 0.886 40 H 0.126 0.874 41 H 0.147 0.853 42 H 0.152 0.848 43 H 0.154 0.846 44 H 0.136 0.864 45 H 0.070 0.930 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.211 4.317 9.119 33.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.176 4.176 3 Si 0.755 3.245 4 H -0.194 1.194 5 H -0.212 1.212 6 H -0.182 1.182 7 C -0.548 4.548 8 H 0.062 0.938 9 C -0.013 4.013 10 H 0.043 0.957 11 C -0.141 4.141 12 C -0.161 4.161 13 C -0.070 4.070 14 N -0.306 5.306 15 C 0.272 3.728 16 O -0.441 6.441 17 C 0.309 3.691 18 O -0.386 6.386 19 N -0.343 5.343 20 C 0.118 3.882 21 C -0.184 4.184 22 C -0.118 4.118 23 C -0.019 4.019 24 C -0.128 4.128 25 C -0.143 4.143 26 C -0.127 4.127 27 C -0.139 4.139 28 C -0.121 4.121 29 C -0.005 4.005 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.118 0.882 35 H 0.176 0.824 36 H 0.095 0.905 37 H 0.255 0.745 38 H 0.138 0.862 39 H 0.132 0.868 40 H 0.144 0.856 41 H 0.165 0.835 42 H 0.170 0.830 43 H 0.171 0.829 44 H 0.154 0.846 45 H 0.088 0.912 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 32.132 4.310 8.898 33.618 hybrid contribution -1.038 1.118 0.331 1.561 sum 31.094 5.428 9.229 32.886 Atomic orbital electron populations 1.70018 1.07849 1.27996 1.52061 1.25798 0.95319 1.02321 0.94183 0.85991 0.79682 0.80091 0.78690 1.19390 1.21222 1.18160 1.21169 0.90820 0.93255 1.49595 0.93760 1.19517 0.93640 0.96224 0.91968 0.95741 1.21507 0.95248 0.97631 0.99700 1.21874 0.94664 1.02883 0.96666 1.23388 1.04997 0.88381 0.90212 1.48457 1.06946 1.29018 1.46131 1.20410 0.88274 0.82239 0.81866 1.90728 1.78038 1.39212 1.36093 1.19777 0.86606 0.80756 0.81970 1.90313 1.76990 1.38995 1.32313 1.45806 1.07074 1.42873 1.38523 1.18363 0.75883 0.97419 0.96583 1.22029 1.00374 0.97696 0.98279 1.19642 0.97142 0.97598 0.97399 1.16171 0.94245 0.93916 0.97613 1.21424 1.00416 0.93520 0.97439 1.21425 0.95616 0.99830 0.97385 1.21713 0.94516 0.97530 0.98961 1.21462 1.01367 0.94299 0.96806 1.21451 0.92740 1.00300 0.97634 1.22301 0.76679 1.01376 1.00150 0.92407 0.92785 0.92439 0.92801 0.88150 0.82376 0.90529 0.74525 0.86234 0.86814 0.85594 0.83527 0.83001 0.82882 0.84566 0.91216 0.92442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.51 13.96 21.45 0.30 -58.21 16 2 C 0.02 1.30 5.47 84.65 0.46 1.76 16 3 Si 0.93 46.28 26.63 68.60 1.83 48.11 16 4 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 5 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 6 H -0.26 -12.72 5.97 99.48 0.59 -12.12 16 7 C -0.51 -28.62 8.86 25.60 0.23 -28.40 16 8 H 0.04 2.71 8.06 -2.91 -0.02 2.68 16 9 C 0.01 0.29 1.79 -11.32 -0.02 0.27 16 10 H 0.02 1.18 5.61 -2.38 -0.01 1.16 16 11 C -0.10 -3.90 5.15 30.62 0.16 -3.74 16 12 C -0.12 -3.65 6.08 30.67 0.19 -3.47 16 13 C 0.05 1.45 6.27 86.37 0.54 1.99 16 14 N -0.57 -20.84 2.97 -819.65 -2.43 -23.27 16 15 C 0.49 17.25 7.74 87.27 0.68 17.92 16 16 O -0.56 -22.93 15.94 -3.25 -0.05 -22.98 16 17 C 0.53 14.31 7.78 87.27 0.68 14.99 16 18 O -0.51 -13.63 13.10 -3.23 -0.04 -13.68 16 19 N -0.69 -14.86 5.53 -473.49 -2.62 -17.48 16 20 C 0.24 3.80 6.15 84.58 0.52 4.32 16 21 C -0.18 -3.34 13.46 31.12 0.42 -2.92 16 22 C -0.12 -2.27 13.24 30.01 0.40 -1.88 16 23 C -0.02 -0.34 5.72 -21.41 -0.12 -0.46 16 24 C -0.11 -1.75 9.75 22.52 0.22 -1.53 16 25 C -0.12 -1.46 10.03 22.23 0.22 -1.23 16 26 C -0.11 -1.01 10.04 22.32 0.22 -0.79 16 27 C -0.12 -1.19 10.03 22.23 0.22 -0.97 16 28 C -0.10 -1.40 9.75 22.52 0.22 -1.18 16 29 C 0.12 5.07 5.52 86.51 0.48 5.54 16 30 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 31 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.16 4.29 3.78 -78.86 -0.30 3.99 16 36 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.42 9.15 7.94 -92.71 -0.74 8.41 16 38 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.13 1.93 8.06 -2.91 -0.02 1.91 16 41 H 0.15 1.08 8.06 -2.91 -0.02 1.06 16 42 H 0.15 0.57 8.06 -2.91 -0.02 0.54 16 43 H 0.15 0.66 8.06 -2.91 -0.02 0.64 16 44 H 0.14 1.47 8.06 -2.91 -0.02 1.45 16 45 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 46 H 0.06 2.78 5.94 -2.39 -0.01 2.77 16 Total: -1.00 -71.90 386.21 2.57 -69.33 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -0.12 Total: 17.96 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: 5.71 Total: 0.23 kcal Atomic # 7 Polarization: -94.21 SS G_CDS: -4.75 Total: -98.96 kcal Atomic # 8 Polarization: -36.57 SS G_CDS: -0.09 Total: -36.66 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 1.83 Total: 48.11 kcal Total: -71.90 2.57 -69.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328801721.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.934 kcal (2) G-P(sol) polarization free energy of solvation -71.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds