Wall clock time and date at job start Tue Mar 31 2020 23:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 119.99678 * 2 1 4 4 H 1.48497 * 109.47557 * 240.00229 * 3 2 1 5 5 H 1.48497 * 109.47332 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47214 * 120.00058 * 3 2 1 7 7 C 1.38806 * 120.00403 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00358 * 164.50079 * 7 2 1 9 9 N 1.36941 * 119.99933 * 344.49759 * 7 2 1 10 10 C 1.47601 * 118.64267 * 331.69579 * 9 7 2 11 11 C 1.53945 * 112.14410 * 222.11255 * 10 9 7 12 12 C 1.50877 * 110.09750 * 40.56346 * 11 10 9 13 13 C 1.52572 * 109.35997 * 268.11716 * 12 11 10 14 14 C 1.47087 * 114.32604 * 85.01199 * 13 12 11 15 15 C 1.44582 * 118.64404 * 151.68087 * 9 7 2 16 16 H 1.09001 * 109.44301 * 209.33450 * 15 9 7 17 17 C 1.53003 * 109.42673 * 329.26364 * 15 9 7 18 18 N 1.46496 * 109.47160 * 305.12357 * 17 15 9 19 19 C 1.34781 * 119.99877 * 179.97438 * 18 17 15 20 20 O 1.21283 * 119.99883 * 0.02562 * 19 18 17 21 21 C 1.50703 * 120.00273 * 179.97438 * 19 18 17 22 22 C 1.53000 * 109.47246 * 180.02562 * 21 19 18 23 23 F 1.39897 * 109.47139 * 300.00461 * 22 21 19 24 24 F 1.39895 * 109.46787 * 60.00103 * 22 21 19 25 25 C 1.52993 * 109.47079 * 180.02562 * 22 21 19 26 26 F 1.39905 * 109.47370 * 59.99812 * 25 22 21 27 27 F 1.39896 * 109.47378 * 180.02562 * 25 22 21 28 28 H 0.96998 * 120.00503 * 359.97438 * 1 2 3 29 29 H 1.09000 * 108.95134 * 342.79956 * 10 9 7 30 30 H 1.09006 * 108.94796 * 101.51474 * 10 9 7 31 31 H 1.09002 * 109.36759 * 160.75735 * 11 10 9 32 32 H 1.09008 * 109.36806 * 280.49958 * 11 10 9 33 33 H 1.09004 * 109.48978 * 148.14854 * 12 11 10 34 34 H 1.09003 * 109.48875 * 28.08346 * 12 11 10 35 35 H 1.08997 * 108.51020 * 323.75496 * 13 12 11 36 36 H 1.08995 * 108.51028 * 206.26241 * 13 12 11 37 37 H 1.09003 * 109.33465 * 57.45539 * 14 13 12 38 38 H 1.08996 * 109.33326 * 177.11113 * 14 13 12 39 39 H 1.09005 * 109.46432 * 65.12232 * 17 15 9 40 40 H 1.08999 * 109.46931 * 185.11809 * 17 15 9 41 41 H 0.97002 * 120.00596 * 359.97438 * 18 17 15 42 42 H 1.09003 * 109.47158 * 300.00961 * 21 19 18 43 43 H 1.09000 * 109.46475 * 59.99976 * 21 19 18 44 44 H 1.09003 * 109.47047 * 300.00551 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0609 -1.2189 -0.2505 9 7 1.3630 -2.3666 0.3159 10 6 0.2010 -2.3059 1.2240 11 6 0.2097 -3.4494 2.2547 12 6 1.6119 -3.6798 2.7616 13 6 2.2919 -4.7422 1.9032 14 6 2.9180 -4.2218 0.6782 15 6 1.8459 -3.6047 -0.2535 16 1 1.0153 -4.3020 -0.3629 17 6 2.4623 -3.3273 -1.6261 18 7 1.4848 -2.6352 -2.4696 19 6 1.8095 -2.2868 -3.7305 20 8 2.9108 -2.5468 -4.1669 21 6 0.8037 -1.5753 -4.5984 22 6 1.4202 -1.2978 -5.9709 23 9 2.5556 -0.4947 -5.8184 24 9 1.7824 -2.5077 -6.5726 25 6 0.3994 -0.5750 -6.8518 26 9 0.0377 0.6350 -6.2498 27 9 0.9629 -0.3217 -8.1070 28 1 -0.4851 0.8400 0.0004 29 1 0.2142 -1.3528 1.7527 30 1 -0.7132 -2.3701 0.6338 31 1 -0.4385 -3.1872 3.0909 32 1 -0.1575 -4.3621 1.7852 33 1 1.5733 -4.0187 3.7969 34 1 2.1769 -2.7494 2.7040 35 1 1.5483 -5.4878 1.6219 36 1 3.0590 -5.2324 2.5025 37 1 3.6487 -3.4575 0.9430 38 1 3.4206 -5.0358 0.1560 39 1 3.3471 -2.7018 -1.5072 40 1 2.7441 -4.2700 -2.0951 41 1 0.6038 -2.4276 -2.1207 42 1 -0.0807 -2.2012 -4.7175 43 1 0.5213 -0.6329 -4.1292 44 1 -0.4854 -1.2004 -6.9706 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329940081.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:39 Heat of formation + Delta-G solvation = -239.061239 kcal Electronic energy + Delta-G solvation = -32024.917090 eV Core-core repulsion = 27090.438218 eV Total energy + Delta-G solvation = -4934.478872 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.151 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -50.87174 -49.63916 -48.51640 -48.07009 -40.74459 -39.54822 -36.01505 -35.21150 -34.00631 -33.05838 -32.45230 -29.37302 -28.15971 -27.00870 -25.19146 -24.01787 -23.13528 -21.60876 -21.00847 -20.77693 -19.54609 -19.47228 -18.86115 -18.14721 -17.77707 -17.48903 -17.37863 -17.13835 -16.36753 -16.22259 -16.01968 -15.79253 -15.54838 -15.19397 -15.15721 -15.03289 -14.83594 -14.67601 -14.58044 -14.40485 -14.31444 -13.92604 -13.75461 -13.42408 -13.36670 -13.19678 -13.07042 -12.86115 -12.80083 -12.68410 -12.39473 -12.01006 -11.90843 -11.53510 -11.38753 -11.30626 -11.19319 -11.11292 -10.82302 -10.34402 -9.83015 -8.53196 -7.79211 -5.21726 1.41730 1.46319 1.50123 1.55494 1.65815 2.27065 2.53194 2.57944 2.78422 2.95877 3.01573 3.35315 3.61602 3.72365 3.75218 3.88729 4.06032 4.10574 4.27866 4.28820 4.39172 4.45101 4.52096 4.63209 4.69052 4.83795 5.02842 5.09486 5.15477 5.26880 5.28273 5.40062 5.44522 5.56782 5.64610 5.70094 5.77454 5.81707 5.92676 6.48751 6.67808 7.28122 7.31598 8.02258 8.40175 9.23578 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.013712 B = 0.003916 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.476786 B = 7148.891084 C = 8243.736016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.019 4.019 3 Si 0.922 3.078 4 H -0.296 1.296 5 H -0.293 1.293 6 H -0.290 1.290 7 C -0.233 4.233 8 H 0.043 0.957 9 N -0.587 5.587 10 C 0.190 3.810 11 C -0.133 4.133 12 C -0.104 4.104 13 C -0.100 4.100 14 C -0.129 4.129 15 C 0.174 3.826 16 H 0.062 0.938 17 C 0.133 3.867 18 N -0.682 5.682 19 C 0.506 3.494 20 O -0.587 6.587 21 C -0.185 4.185 22 C 0.258 3.742 23 F -0.201 7.201 24 F -0.179 7.179 25 C 0.243 3.757 26 F -0.188 7.188 27 F -0.197 7.197 28 H 0.248 0.752 29 H 0.036 0.964 30 H 0.009 0.991 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.040 0.960 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.039 0.961 38 H 0.071 0.929 39 H 0.037 0.963 40 H 0.067 0.933 41 H 0.413 0.587 42 H 0.177 0.823 43 H 0.137 0.863 44 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.443 -8.279 -6.186 11.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.216 4.216 3 Si 0.754 3.246 4 H -0.223 1.223 5 H -0.219 1.219 6 H -0.217 1.217 7 C -0.364 4.364 8 H 0.061 0.939 9 N -0.309 5.309 10 C 0.065 3.935 11 C -0.172 4.172 12 C -0.142 4.142 13 C -0.137 4.137 14 C -0.170 4.170 15 C 0.067 3.933 16 H 0.080 0.920 17 C 0.008 3.992 18 N -0.331 5.331 19 C 0.292 3.708 20 O -0.469 6.469 21 C -0.225 4.225 22 C 0.220 3.780 23 F -0.182 7.182 24 F -0.160 7.160 25 C 0.189 3.811 26 F -0.169 7.169 27 F -0.178 7.178 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.027 0.973 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.059 0.941 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.057 0.943 38 H 0.090 0.910 39 H 0.055 0.945 40 H 0.085 0.915 41 H 0.250 0.750 42 H 0.194 0.806 43 H 0.155 0.845 44 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -4.773 -8.320 -6.481 11.576 hybrid contribution 0.746 1.828 0.237 1.988 sum -4.027 -6.492 -6.244 9.867 Atomic orbital electron populations 1.70061 1.05036 1.25116 1.55588 1.25142 0.95571 0.98929 1.01928 0.86072 0.78261 0.83025 0.77264 1.22274 1.21856 1.21693 1.18868 0.91459 0.85853 1.40249 0.93919 1.43757 1.34150 1.01780 1.51248 1.20783 0.87635 0.95478 0.89589 1.21950 0.96974 0.99426 0.98820 1.20915 0.96164 0.98814 0.98318 1.20265 0.99872 0.97684 0.95921 1.21296 0.98632 0.99684 0.97393 1.20674 0.94959 0.88351 0.89360 0.91960 1.21456 0.91616 0.95159 0.90944 1.45604 1.18506 1.57522 1.11443 1.20370 0.88067 0.79196 0.83188 1.90717 1.24406 1.57245 1.74524 1.22842 1.01356 1.06899 0.91420 1.22143 0.83609 0.77722 0.94540 1.93065 1.54991 1.73611 1.96512 1.93071 1.92764 1.45355 1.84770 1.23277 0.97022 0.84467 0.76368 1.93070 1.92103 1.48303 1.83446 1.93036 1.87397 1.95014 1.42356 0.94274 0.94575 0.97321 0.92133 0.91958 0.91981 0.94134 0.91788 0.92215 0.94258 0.90997 0.94466 0.91499 0.75005 0.80597 0.84525 0.77766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.19 11.13 21.65 0.24 -45.95 16 2 C -0.02 -0.94 4.86 84.86 0.41 -0.53 16 3 Si 0.92 43.64 29.58 68.60 2.03 45.67 16 4 H -0.30 -14.53 7.11 99.48 0.71 -13.83 16 5 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 6 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 7 C -0.23 -11.21 7.61 84.03 0.64 -10.57 16 8 H 0.04 2.22 6.75 -2.91 -0.02 2.20 16 9 N -0.59 -24.01 1.77 -674.24 -1.19 -25.20 16 10 C 0.19 7.69 4.66 86.49 0.40 8.10 16 11 C -0.13 -4.17 5.71 30.22 0.17 -4.00 16 12 C -0.10 -3.16 5.51 29.76 0.16 -2.99 16 13 C -0.10 -2.68 5.15 28.61 0.15 -2.53 16 14 C -0.13 -3.93 5.07 29.39 0.15 -3.78 16 15 C 0.17 5.93 2.19 45.99 0.10 6.03 16 16 H 0.06 1.96 8.07 -2.39 -0.02 1.94 16 17 C 0.13 4.79 4.52 86.38 0.39 5.18 16 18 N -0.68 -24.15 4.71 -463.05 -2.18 -26.33 16 19 C 0.51 18.09 7.60 87.66 0.67 18.76 16 20 O -0.59 -25.64 14.83 -3.04 -0.05 -25.69 16 21 C -0.19 -4.71 5.17 29.85 0.15 -4.55 16 22 C 0.26 7.05 1.40 30.59 0.04 7.09 16 23 F -0.20 -7.44 16.10 44.97 0.72 -6.71 16 24 F -0.18 -5.27 16.12 44.97 0.73 -4.55 16 25 C 0.24 4.65 4.83 71.98 0.35 5.00 16 26 F -0.19 -4.34 16.80 44.97 0.76 -3.58 16 27 F -0.20 -4.66 17.30 44.97 0.78 -3.88 16 28 H 0.25 12.61 8.31 -92.71 -0.77 11.84 16 29 H 0.04 1.72 6.47 -2.39 -0.02 1.70 16 30 H 0.01 0.38 8.02 -2.38 -0.02 0.36 16 31 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.06 1.75 7.31 -2.38 -0.02 1.74 16 33 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.04 1.50 7.48 -2.39 -0.02 1.48 16 35 H 0.06 1.54 7.36 -2.39 -0.02 1.52 16 36 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.07 1.87 8.10 -2.39 -0.02 1.85 16 39 H 0.04 1.58 6.84 -2.38 -0.02 1.56 16 40 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.41 14.58 8.07 -92.71 -0.75 13.83 16 42 H 0.18 2.56 8.14 -2.39 -0.02 2.54 16 43 H 0.14 3.53 7.80 -2.39 -0.02 3.51 16 44 H 0.21 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -65.26 361.54 5.91 -59.35 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: 0.28 Total: 15.66 kcal Atomic # 6 Polarization: 17.42 SS G_CDS: 3.79 Total: 21.21 kcal Atomic # 7 Polarization: -94.34 SS G_CDS: -3.13 Total: -97.48 kcal Atomic # 8 Polarization: -25.64 SS G_CDS: -0.05 Total: -25.69 kcal Atomic # 9 Polarization: -21.71 SS G_CDS: 2.98 Total: -18.72 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -65.26 5.91 -59.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329940081.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -179.707 kcal (2) G-P(sol) polarization free energy of solvation -65.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -244.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -239.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds