Wall clock time and date at job start Tue Mar 31 2020 23:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99933 * 2 1 4 4 H 1.48506 * 109.46993 * 274.99223 * 3 2 1 5 5 H 1.48503 * 109.47027 * 34.98754 * 3 2 1 6 6 H 1.48499 * 109.47226 * 154.99169 * 3 2 1 7 7 C 1.37873 * 120.00366 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00539 * 188.10993 * 7 2 1 9 9 C 1.50708 * 119.99595 * 8.10767 * 7 2 1 10 10 C 1.53036 * 109.46107 * 65.05222 * 9 7 2 11 11 C 1.53160 * 109.32853 * 181.38526 * 10 9 7 12 12 N 1.46927 * 108.76909 * 305.35299 * 11 10 9 13 13 C 1.34779 * 120.63498 * 233.63420 * 12 11 10 14 14 O 1.21348 * 120.00439 * 171.44144 * 13 12 11 15 15 C 1.49460 * 119.99590 * 351.44078 * 13 12 11 16 16 O 1.21348 * 119.99777 * 354.35667 * 15 13 12 17 17 N 1.34771 * 119.99483 * 174.35372 * 15 13 12 18 18 C 1.46500 * 119.99695 * 180.02562 * 17 15 13 19 19 C 1.52996 * 109.47435 * 180.02562 * 18 17 15 20 20 C 1.52998 * 109.47434 * 179.97438 * 19 18 17 21 21 H 1.09000 * 110.75999 * 57.04306 * 20 19 18 22 22 C 1.55136 * 110.85747 * 180.76409 * 20 19 18 23 23 C 1.53854 * 106.89963 * 160.29541 * 22 20 19 24 24 C 1.54277 * 108.92827 * 312.74496 * 23 22 20 25 25 S 1.83096 * 104.64838 * 27.95207 * 24 23 22 26 26 C 1.46930 * 118.73783 * 53.60970 * 12 11 10 27 27 C 1.53040 * 109.45769 * 185.10329 * 9 7 2 28 28 H 0.96993 * 120.00115 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.46335 * 305.07717 * 9 7 2 30 30 H 1.09003 * 109.49560 * 301.32545 * 10 9 7 31 31 H 1.08997 * 109.50017 * 61.41888 * 10 9 7 32 32 H 1.09000 * 109.59188 * 185.56631 * 11 10 9 33 33 H 1.09003 * 109.71116 * 65.20785 * 11 10 9 34 34 H 0.96999 * 120.00130 * 0.02562 * 17 15 13 35 35 H 1.09005 * 109.47143 * 300.00503 * 18 17 15 36 36 H 1.08998 * 109.47145 * 59.99830 * 18 17 15 37 37 H 1.08997 * 109.47067 * 300.00601 * 19 18 17 38 38 H 1.09005 * 109.46936 * 59.99803 * 19 18 17 39 39 H 1.09002 * 109.97623 * 279.65374 * 22 20 19 40 40 H 1.09005 * 109.97534 * 40.93399 * 22 20 19 41 41 H 1.08999 * 109.61277 * 192.82247 * 23 22 20 42 42 H 1.09003 * 109.46297 * 72.57799 * 23 22 20 43 43 H 1.08999 * 110.39827 * 269.15973 * 24 23 22 44 44 H 1.08996 * 110.50044 * 146.79125 * 24 23 22 45 45 H 1.09003 * 109.58794 * 186.60562 * 26 12 11 46 46 H 1.08995 * 109.58648 * 66.17986 * 26 12 11 47 47 H 1.08997 * 109.50204 * 298.58203 * 27 9 7 48 48 H 1.09006 * 109.49792 * 58.67905 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.3911 2.1073 -1.3948 5 1 1.5032 2.6200 0.8028 6 1 3.5955 1.4121 0.5919 7 6 2.0046 -1.1940 0.0005 8 1 3.0764 -1.1986 0.1325 9 6 1.2624 -2.4927 -0.1830 10 6 0.6466 -2.5346 -1.5833 11 6 -0.1358 -3.8401 -1.7543 12 7 0.7560 -4.9685 -1.4536 13 6 0.9166 -5.9718 -2.3390 14 8 1.7680 -6.8160 -2.1517 15 6 0.0460 -6.0447 -3.5518 16 8 -0.8712 -5.2619 -3.6881 17 7 0.2798 -6.9797 -4.4938 18 6 -0.5731 -7.0508 -5.6828 19 6 -0.0967 -8.1910 -6.5848 20 6 -0.9879 -8.2657 -7.8262 21 1 -0.9878 -7.3151 -8.3596 22 6 -0.5442 -9.4258 -8.7557 23 6 -1.7379 -9.7464 -9.6719 24 6 -3.0147 -9.8508 -8.8122 25 16 -2.6958 -8.7616 -7.3754 26 6 1.4698 -4.9820 -0.1694 27 6 2.2341 -3.6632 -0.0163 28 1 -0.4850 0.8400 0.0004 29 1 0.4718 -2.5679 0.5637 30 1 -0.0277 -1.6875 -1.7097 31 1 1.4385 -2.4844 -2.3307 32 1 -0.4931 -3.9203 -2.7809 33 1 -0.9842 -3.8526 -1.0701 34 1 1.0128 -7.6055 -4.3846 35 1 -1.6041 -7.2340 -5.3799 36 1 -0.5165 -6.1083 -6.2274 37 1 0.9343 -8.0083 -6.8876 38 1 -0.1537 -9.1334 -6.0399 39 1 0.3123 -9.1162 -9.3547 40 1 -0.2857 -10.3017 -8.1606 41 1 -1.5627 -10.6929 -10.1832 42 1 -1.8558 -8.9500 -10.4069 43 1 -3.1682 -10.8785 -8.4833 44 1 -3.8812 -9.4981 -9.3714 45 1 2.1718 -5.8156 -0.1503 46 1 0.7536 -5.0860 0.6456 47 1 3.0111 -3.6024 -0.7783 48 1 2.6899 -3.6196 0.9729 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332018331.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:59:44 Heat of formation + Delta-G solvation = -95.408479 kcal Electronic energy + Delta-G solvation = -27166.147358 eV Core-core repulsion = 23345.967654 eV Total energy + Delta-G solvation = -3820.179704 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.01138 -39.94737 -38.59806 -37.85810 -36.33596 -35.26372 -33.23634 -33.01157 -31.82468 -29.22562 -28.26528 -26.50927 -25.22936 -24.18172 -23.59737 -22.80431 -21.85412 -21.46255 -20.49905 -18.73430 -18.36587 -18.09483 -17.87149 -17.16903 -17.01195 -16.48103 -16.34251 -16.07613 -15.85524 -15.38749 -15.06057 -15.01981 -14.73703 -14.63891 -14.50470 -14.29565 -13.96074 -13.71779 -13.42035 -13.23622 -13.07863 -12.84527 -12.78946 -12.54861 -12.47581 -12.35897 -12.18948 -12.15117 -12.02513 -11.94478 -11.70250 -11.52216 -11.10037 -10.93184 -10.76344 -10.46270 -10.38412 -10.08521 -9.70635 -8.71498 -8.11479 -6.20821 0.28675 0.86929 1.26449 1.40621 1.42581 1.48988 1.52052 2.06548 2.42991 2.44870 3.18230 3.23269 3.46642 3.73628 3.88415 4.02544 4.07231 4.09447 4.14358 4.26902 4.29792 4.33927 4.39866 4.45807 4.54463 4.56613 4.69114 4.73593 4.77279 4.81776 4.91746 4.94578 5.00098 5.02362 5.05873 5.13486 5.18698 5.24370 5.26723 5.35431 5.41013 5.63401 5.94037 5.97217 6.02630 6.25378 6.36536 6.66267 6.89025 6.90872 7.46037 8.96069 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021333 B = 0.001989 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.208345 B =14073.077643 C =14673.839126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.015 3.985 3 Si 0.949 3.051 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.534 4.534 8 H 0.052 0.948 9 C 0.041 3.959 10 C -0.106 4.106 11 C 0.081 3.919 12 N -0.571 5.571 13 C 0.503 3.497 14 O -0.548 6.548 15 C 0.508 3.492 16 O -0.529 6.529 17 N -0.683 5.683 18 C 0.117 3.883 19 C -0.105 4.105 20 C -0.024 4.024 21 H 0.105 0.895 22 C -0.120 4.120 23 C -0.127 4.127 24 C -0.065 4.065 25 S -0.366 6.366 26 C 0.111 3.889 27 C -0.112 4.112 28 H 0.261 0.739 29 H 0.006 0.994 30 H 0.058 0.942 31 H 0.032 0.968 32 H 0.131 0.869 33 H 0.058 0.942 34 H 0.422 0.578 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.110 0.890 38 H 0.088 0.912 39 H 0.106 0.894 40 H 0.084 0.916 41 H 0.102 0.898 42 H 0.078 0.922 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.096 0.904 46 H 0.077 0.923 47 H 0.047 0.953 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.433 -22.477 -20.447 30.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.184 4.184 3 Si 0.775 3.225 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.572 4.572 8 H 0.070 0.930 9 C 0.023 3.977 10 C -0.145 4.145 11 C -0.040 4.040 12 N -0.302 5.302 13 C 0.286 3.714 14 O -0.427 6.427 15 C 0.290 3.710 16 O -0.407 6.407 17 N -0.336 5.336 18 C -0.006 4.006 19 C -0.144 4.144 20 C -0.152 4.152 21 H 0.123 0.877 22 C -0.159 4.159 23 C -0.165 4.165 24 C -0.213 4.213 25 S -0.141 6.141 26 C -0.010 4.010 27 C -0.150 4.150 28 H 0.070 0.930 29 H 0.024 0.976 30 H 0.077 0.923 31 H 0.051 0.949 32 H 0.148 0.852 33 H 0.076 0.924 34 H 0.260 0.740 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.128 0.872 38 H 0.106 0.894 39 H 0.124 0.876 40 H 0.102 0.898 41 H 0.120 0.880 42 H 0.097 0.903 43 H 0.115 0.885 44 H 0.116 0.884 45 H 0.115 0.885 46 H 0.096 0.904 47 H 0.066 0.934 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.501 -21.964 -19.520 29.491 hybrid contribution 0.894 0.913 -0.411 1.342 sum -1.608 -21.051 -19.931 29.034 Atomic orbital electron populations 1.70061 1.07132 1.27246 1.51014 1.25707 0.95589 1.02256 0.94857 0.85681 0.78942 0.79866 0.77990 1.20363 1.21026 1.19285 1.21524 0.93825 0.92320 1.49500 0.93007 1.18657 0.93807 0.92453 0.92804 1.21723 0.98495 0.95463 0.98836 1.22818 0.91383 0.84466 1.05340 1.48172 1.43827 1.20685 1.17548 1.20168 0.84297 0.82396 0.84580 1.90681 1.34612 1.40751 1.76684 1.20106 0.84724 0.81899 0.84311 1.90531 1.32173 1.40074 1.77952 1.45678 1.34450 1.33315 1.20129 1.21597 0.93938 1.00370 0.84713 1.21715 1.00399 0.98406 0.93878 1.24032 0.90090 1.02753 0.98361 0.87709 1.22680 0.99377 0.96801 0.97050 1.22329 0.91446 1.04514 0.98225 1.24082 1.02013 1.00707 0.94493 1.88237 1.23918 1.63117 1.38815 1.21873 0.96373 0.99259 0.83514 1.21849 0.98129 0.93761 1.01296 0.93005 0.97555 0.92296 0.94915 0.85226 0.92355 0.74005 0.92130 0.91004 0.87202 0.89370 0.87593 0.89757 0.88004 0.90279 0.88479 0.88446 0.88536 0.90447 0.93413 0.90980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.14 12.06 21.45 0.26 -52.89 16 2 C 0.01 0.83 5.21 84.65 0.44 1.27 16 3 Si 0.95 43.85 29.54 68.60 2.03 45.87 16 4 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 5 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 7 C -0.53 -29.37 8.49 25.60 0.22 -29.16 16 8 H 0.05 2.81 7.76 -2.92 -0.02 2.79 16 9 C 0.04 2.06 1.93 -11.51 -0.02 2.04 16 10 C -0.11 -5.06 5.20 30.66 0.16 -4.90 16 11 C 0.08 3.29 6.00 86.35 0.52 3.81 16 12 N -0.57 -21.23 2.97 -820.51 -2.44 -23.67 16 13 C 0.50 17.20 7.73 87.27 0.67 17.88 16 14 O -0.55 -19.12 15.92 -3.24 -0.05 -19.18 16 15 C 0.51 15.60 7.76 87.27 0.68 16.28 16 16 O -0.53 -18.85 13.15 -3.24 -0.04 -18.90 16 17 N -0.68 -15.05 5.55 -464.41 -2.58 -17.63 16 18 C 0.12 2.17 5.53 86.38 0.48 2.65 16 19 C -0.11 -1.13 4.91 30.59 0.15 -0.98 16 20 C -0.02 -0.25 3.24 31.33 0.10 -0.15 16 21 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 22 C -0.12 -0.68 5.89 31.61 0.19 -0.49 16 23 C -0.13 -0.68 6.39 31.32 0.20 -0.48 16 24 C -0.07 -0.63 7.34 72.41 0.53 -0.10 16 25 S -0.37 -6.22 21.74 -56.49 -1.23 -7.45 16 26 C 0.11 3.97 6.44 86.36 0.56 4.52 16 27 C -0.11 -4.60 5.30 30.67 0.16 -4.44 16 28 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 29 H 0.01 0.35 8.11 -2.39 -0.02 0.33 16 30 H 0.06 3.14 6.78 -2.39 -0.02 3.12 16 31 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.13 5.21 4.28 -51.37 -0.22 4.99 16 33 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.42 7.62 7.96 -92.71 -0.74 6.88 16 35 H 0.06 1.40 7.31 -2.38 -0.02 1.38 16 36 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 39 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 40 H 0.08 0.47 8.08 -2.38 -0.02 0.45 16 41 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 42 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 43 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.10 3.18 7.01 -2.39 -0.02 3.16 16 46 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 47 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 48 H 0.07 2.80 8.14 -2.38 -0.02 2.79 16 Total: -1.00 -67.90 389.21 0.99 -66.91 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: 0.01 Total: 19.17 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: 5.03 Total: 7.75 kcal Atomic # 7 Polarization: -89.43 SS G_CDS: -4.76 Total: -94.18 kcal Atomic # 8 Polarization: -37.98 SS G_CDS: -0.09 Total: -38.07 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Atomic # 16 Polarization: -6.22 SS G_CDS: -1.23 Total: -7.45 kcal Total: -67.90 0.99 -66.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332018331.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.503 kcal (2) G-P(sol) polarization free energy of solvation -67.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds