Wall clock time and date at job start Tue Mar 31 2020 23:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86794 * 119.99727 * 2 1 4 4 H 1.48500 * 109.47244 * 269.99575 * 3 2 1 5 5 H 1.48503 * 109.47566 * 30.00257 * 3 2 1 6 6 H 1.48502 * 109.47137 * 150.00090 * 3 2 1 7 7 C 1.37873 * 119.99861 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00101 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00590 * 0.02562 * 7 2 1 10 10 C 1.53039 * 109.46347 * 180.02562 * 9 7 2 11 11 C 1.53199 * 109.31216 * 178.62628 * 10 9 7 12 12 N 1.46920 * 108.77369 * 54.63381 * 11 10 9 13 13 C 1.34779 * 120.63292 * 126.36927 * 12 11 10 14 14 O 1.21352 * 119.99391 * 351.37481 * 13 12 11 15 15 C 1.49453 * 120.00319 * 171.65396 * 13 12 11 16 16 O 1.21351 * 119.99571 * 352.91877 * 15 13 12 17 17 N 1.34772 * 119.99676 * 172.92295 * 15 13 12 18 18 C 1.46504 * 119.99612 * 179.97438 * 17 15 13 19 19 C 1.52998 * 109.47303 * 179.97438 * 18 17 15 20 20 C 1.52999 * 109.47331 * 179.97438 * 19 18 17 21 21 H 1.09000 * 110.36016 * 304.13170 * 20 19 18 22 22 C 1.54280 * 110.40000 * 181.68285 * 20 19 18 23 23 C 1.53858 * 108.92473 * 213.25393 * 22 20 19 24 24 C 1.55138 * 106.89594 * 47.25634 * 23 22 20 25 25 S 1.83095 * 110.39926 * 66.45584 * 20 19 18 26 26 C 1.46926 * 118.74297 * 306.64052 * 12 11 10 27 27 C 1.52769 * 109.00585 * 53.31021 * 26 12 11 28 28 H 0.96994 * 119.99991 * 359.97438 * 1 2 3 29 29 H 1.09011 * 109.45791 * 299.97280 * 9 7 2 30 30 H 1.09003 * 109.49691 * 58.67714 * 10 9 7 31 31 H 1.08997 * 109.52180 * 298.59406 * 10 9 7 32 32 H 1.09001 * 109.58642 * 294.84981 * 11 10 9 33 33 H 1.08994 * 109.70045 * 174.49123 * 11 10 9 34 34 H 0.96995 * 120.00542 * 359.97438 * 17 15 13 35 35 H 1.09004 * 109.47424 * 300.00073 * 18 17 15 36 36 H 1.09005 * 109.47085 * 60.00066 * 18 17 15 37 37 H 1.09004 * 109.47253 * 300.00561 * 19 18 17 38 38 H 1.08997 * 109.46794 * 59.99904 * 19 18 17 39 39 H 1.08995 * 109.60866 * 333.17768 * 22 20 19 40 40 H 1.08993 * 109.60479 * 93.33580 * 22 20 19 41 41 H 1.08993 * 109.97650 * 287.90071 * 23 22 20 42 42 H 1.09000 * 110.00708 * 166.63515 * 23 22 20 43 43 H 1.09005 * 110.85545 * 199.69586 * 24 23 22 44 44 H 1.09009 * 111.03245 * 76.14421 * 24 23 22 45 45 H 1.08999 * 109.59138 * 173.14598 * 26 12 11 46 46 H 1.09004 * 109.58917 * 293.57366 * 26 12 11 47 47 H 1.09001 * 109.56247 * 185.55665 * 27 26 12 48 48 H 1.09000 * 109.38684 * 65.51461 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0017 10 6 2.2459 -3.6622 -0.0015 11 6 1.4768 -4.9867 0.0320 12 7 0.5234 -5.0083 -1.0857 13 6 0.5139 -6.0336 -1.9604 14 8 1.3931 -6.8693 -1.9253 15 6 -0.5760 -6.1378 -2.9777 16 8 -1.5198 -5.3761 -2.9360 17 7 -0.5107 -7.0779 -3.9413 18 6 -1.5793 -7.1804 -4.9382 19 6 -1.2629 -8.3192 -5.9098 20 6 -2.3793 -8.4267 -6.9505 21 1 -3.3438 -8.5569 -6.4599 22 6 -2.1024 -9.5968 -7.9171 23 6 -2.6398 -9.2301 -9.3114 24 6 -2.1448 -7.7929 -9.6217 25 16 -2.4019 -6.9395 -8.0182 26 6 -0.4154 -3.8880 -1.2353 27 6 0.3712 -2.5785 -1.2513 28 1 -0.4850 0.8400 0.0004 29 1 0.6245 -2.5576 0.8884 30 1 2.8876 -3.5919 0.8768 31 1 2.8569 -3.6190 -0.9030 32 1 0.9364 -5.0718 0.9748 33 1 2.1738 -5.8189 -0.0661 34 1 0.2438 -7.6865 -3.9748 35 1 -2.5258 -7.3826 -4.4368 36 1 -1.6532 -6.2430 -5.4894 37 1 -0.3165 -8.1166 -6.4112 38 1 -1.1887 -9.2567 -5.3589 39 1 -1.0291 -9.7777 -7.9746 40 1 -2.6033 -10.4952 -7.5567 41 1 -3.7294 -9.2562 -9.3092 42 1 -2.2523 -9.9261 -10.0553 43 1 -2.7481 -7.3355 -10.4059 44 1 -1.0900 -7.7932 -9.8965 45 1 -0.9649 -3.9941 -2.1706 46 1 -1.1132 -3.8816 -0.3979 47 1 -0.3214 -1.7369 -1.2626 48 1 0.9995 -2.5447 -2.1413 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332018333.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:59:49 Heat of formation + Delta-G solvation = -75.866750 kcal Electronic energy + Delta-G solvation = -27257.442508 eV Core-core repulsion = 23438.110197 eV Total energy + Delta-G solvation = -3819.332311 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.61749 -38.58403 -37.32157 -36.95522 -35.38929 -33.47351 -32.40104 -31.19422 -30.05664 -28.46735 -26.62629 -25.45213 -24.01481 -22.53712 -22.24969 -21.84999 -21.25202 -20.15518 -18.89331 -17.33597 -17.22450 -16.82678 -16.35781 -16.12347 -15.82340 -15.47212 -14.94775 -14.87792 -14.50788 -14.41505 -14.06839 -13.80814 -13.59971 -13.10795 -13.04769 -12.83922 -12.73092 -12.40789 -12.36781 -12.26225 -11.98463 -11.73986 -11.56456 -11.48480 -11.37565 -11.33692 -10.93303 -10.85323 -10.59373 -10.34248 -10.17260 -10.04587 -9.67703 -9.29423 -9.19034 -9.14946 -8.58531 -8.32298 -8.05326 -8.03074 -5.98076 -4.04605 1.40195 1.66066 1.98910 2.52827 3.31594 3.38500 3.41332 3.44897 3.72902 3.97876 4.14552 4.27758 4.44582 4.49734 4.55906 4.59405 4.72310 4.84262 4.94108 5.08248 5.15113 5.26817 5.29357 5.31529 5.32642 5.52746 5.65513 5.67947 5.72246 5.86372 5.92133 6.09115 6.14459 6.27964 6.48094 6.62903 6.72781 6.81482 7.00951 7.15008 7.19299 7.33479 7.69168 7.80086 7.92620 7.98063 8.10381 8.28405 8.44643 8.98632 9.60168 11.07415 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016974 B = 0.002150 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.158335 B =13018.008553 C =14106.382019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.512 4.512 8 H 0.054 0.946 9 C 0.046 3.954 10 C -0.122 4.122 11 C 0.107 3.893 12 N -0.562 5.562 13 C 0.500 3.500 14 O -0.546 6.546 15 C 0.508 3.492 16 O -0.503 6.503 17 N -0.705 5.705 18 C 0.116 3.884 19 C -0.117 4.117 20 C -0.039 4.039 21 H 0.105 0.895 22 C -0.127 4.127 23 C -0.128 4.128 24 C -0.079 4.079 25 S -0.280 6.280 26 C 0.067 3.933 27 C -0.124 4.124 28 H 0.260 0.740 29 H 0.028 0.972 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.411 0.589 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.101 0.899 44 H 0.090 0.910 45 H 0.122 0.878 46 H 0.062 0.938 47 H 0.106 0.894 48 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.920 -21.364 -16.536 27.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.551 4.551 8 H 0.073 0.927 9 C 0.027 3.973 10 C -0.160 4.160 11 C -0.015 4.015 12 N -0.293 5.293 13 C 0.282 3.718 14 O -0.425 6.425 15 C 0.290 3.710 16 O -0.379 6.379 17 N -0.359 5.359 18 C -0.007 4.007 19 C -0.157 4.157 20 C -0.168 4.168 21 H 0.123 0.877 22 C -0.166 4.166 23 C -0.166 4.166 24 C -0.227 4.227 25 S -0.054 6.054 26 C -0.053 4.053 27 C -0.162 4.162 28 H 0.070 0.930 29 H 0.046 0.954 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.247 0.753 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.103 0.897 41 H 0.098 0.902 42 H 0.102 0.898 43 H 0.120 0.880 44 H 0.109 0.891 45 H 0.139 0.861 46 H 0.080 0.920 47 H 0.124 0.876 48 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -6.455 -19.927 -16.204 26.483 hybrid contribution 0.917 -0.389 -0.271 1.032 sum -5.538 -20.316 -16.475 26.736 Atomic orbital electron populations 1.69845 1.05826 1.26462 1.50747 1.24970 0.94874 0.99057 0.95138 0.86615 0.79855 0.83575 0.78064 1.20749 1.21265 1.20001 1.21185 0.92887 0.90568 1.50424 0.92726 1.18681 0.92673 0.91652 0.94251 1.22008 0.98933 0.93939 1.01152 1.21887 0.91793 1.00253 0.87542 1.48221 1.35306 1.19775 1.26001 1.19882 0.85903 0.83063 0.82908 1.90686 1.37482 1.42013 1.72356 1.20379 0.87294 0.81001 0.82293 1.90572 1.34265 1.39731 1.73313 1.45712 1.25889 1.35365 1.28898 1.21476 0.90432 0.99639 0.89157 1.21904 0.98594 0.99102 0.96058 1.23731 1.02391 0.93699 0.97017 0.87709 1.22412 1.02882 0.97823 0.93433 1.22564 1.02089 0.95172 0.96803 1.24286 1.04769 0.96882 0.96786 1.88000 1.96135 1.16316 1.04900 1.22992 0.91526 0.85868 1.04945 1.21961 1.00063 0.95049 0.99137 0.92954 0.95410 0.91893 0.92832 0.91518 0.90111 0.75309 0.91012 0.90117 0.89869 0.89935 0.90327 0.89702 0.90249 0.89773 0.88019 0.89139 0.86115 0.91995 0.87581 0.94530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.18 11.31 55.43 0.63 -24.55 16 2 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 3 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.51 -13.97 8.56 -34.44 -0.29 -14.26 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.05 1.13 2.07 -91.73 -0.19 0.94 16 10 C -0.12 -2.55 5.30 -26.61 -0.14 -2.69 16 11 C 0.11 1.98 6.45 -3.71 -0.02 1.95 16 12 N -0.56 -10.76 2.98 -173.53 -0.52 -11.28 16 13 C 0.50 9.00 7.73 -11.58 -0.09 8.91 16 14 O -0.55 -10.18 15.93 5.50 0.09 -10.09 16 15 C 0.51 8.18 7.74 -11.59 -0.09 8.09 16 16 O -0.50 -9.15 13.19 5.50 0.07 -9.08 16 17 N -0.70 -8.51 5.55 -60.72 -0.34 -8.84 16 18 C 0.12 1.18 5.53 -4.04 -0.02 1.15 16 19 C -0.12 -0.78 4.73 -26.73 -0.13 -0.91 16 20 C -0.04 -0.25 3.27 -26.06 -0.09 -0.34 16 21 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 22 C -0.13 -0.55 5.94 -25.61 -0.15 -0.70 16 23 C -0.13 -0.53 6.46 -25.15 -0.16 -0.69 16 24 C -0.08 -0.46 7.38 38.29 0.28 -0.17 16 25 S -0.28 -2.51 21.67 -107.50 -2.33 -4.84 16 26 C 0.07 1.37 5.95 -3.93 -0.02 1.35 16 27 C -0.12 -2.93 5.14 -26.83 -0.14 -3.07 16 28 H 0.26 7.06 8.31 -40.82 -0.34 6.73 16 29 H 0.03 0.73 8.14 -51.92 -0.42 0.31 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.08 1.42 7.00 -51.93 -0.36 1.06 16 34 H 0.41 4.30 7.96 -40.82 -0.33 3.98 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.08 0.97 7.28 -51.93 -0.38 0.60 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.08 0.32 7.86 -51.93 -0.41 -0.08 16 40 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 43 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.09 0.48 8.14 -51.92 -0.42 0.06 16 45 H 0.12 2.46 4.32 -54.72 -0.24 2.23 16 46 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 47 H 0.11 2.79 6.04 -51.93 -0.31 2.48 16 48 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 387.66 15.07 5.84 5.84 Total: -1.00 -31.08 387.66 -10.83 -41.91 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -7.91 Total: 3.51 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -1.35 Total: 1.13 kcal Atomic # 7 Polarization: -44.45 SS G_CDS: -0.23 Total: -44.67 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: 0.16 Total: -19.17 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -2.51 SS G_CDS: -2.33 Total: -4.84 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.08 -10.83 -41.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332018333.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.956 kcal (2) G-P(sol) polarization free energy of solvation -31.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds