Wall clock time and date at job start Tue Mar 31 2020 23:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86808 * 119.99874 * 2 1 4 4 H 1.48502 * 109.47051 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47120 * 300.00580 * 3 2 1 6 6 H 1.48503 * 109.46665 * 60.00603 * 3 2 1 7 7 C 1.37876 * 120.00618 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00304 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99694 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.49983 * 60.06279 * 9 7 2 11 11 C 1.53039 * 109.52712 * 180.14809 * 9 7 2 12 12 C 1.53037 * 109.53963 * 181.32948 * 11 9 7 13 13 C 1.53627 * 109.24537 * 298.51019 * 12 11 9 14 14 N 1.46930 * 108.53916 * 54.85812 * 13 12 11 15 15 C 1.34768 * 120.63193 * 126.37474 * 14 13 12 16 16 O 1.21352 * 120.00381 * 188.42620 * 15 14 13 17 17 C 1.49457 * 120.00026 * 8.41554 * 15 14 13 18 18 O 1.21352 * 119.99905 * 6.75284 * 17 15 14 19 19 N 1.34781 * 120.00040 * 186.74927 * 17 15 14 20 20 C 1.46491 * 119.99807 * 180.02562 * 19 17 15 21 21 C 1.53001 * 109.47085 * 179.72474 * 20 19 17 22 22 C 1.52577 * 109.22497 * 295.59556 * 21 20 19 23 23 C 1.53121 * 109.94491 * 168.96370 * 22 21 20 24 24 S 1.81742 * 108.80814 * 63.08524 * 23 22 21 25 25 C 1.81748 * 102.22080 * 306.71396 * 24 23 22 26 26 C 1.52581 * 109.22608 * 174.40027 * 21 20 19 27 27 C 1.46923 * 118.73801 * 306.09193 * 14 13 12 28 28 H 0.96992 * 120.00376 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.45892 * 301.35358 * 11 9 7 30 30 H 1.08998 * 109.45808 * 61.32519 * 11 9 7 31 31 H 1.09003 * 109.49635 * 58.58940 * 12 11 9 32 32 H 1.09002 * 109.50002 * 178.68539 * 12 11 9 33 33 H 1.08999 * 109.73725 * 295.12120 * 13 12 11 34 34 H 1.08996 * 109.66601 * 174.55020 * 13 12 11 35 35 H 0.97002 * 119.99457 * 359.72484 * 19 17 15 36 36 H 1.09007 * 109.47298 * 299.72037 * 20 19 17 37 37 H 1.09002 * 109.47583 * 59.72346 * 20 19 17 38 38 H 1.08995 * 109.21919 * 54.99976 * 21 20 19 39 39 H 1.09005 * 109.38701 * 289.15093 * 22 21 20 40 40 H 1.09000 * 109.38854 * 48.85493 * 22 21 20 41 41 H 1.08998 * 109.60380 * 303.27362 * 23 22 21 42 42 H 1.09001 * 109.67921 * 182.93860 * 23 22 21 43 43 H 1.08997 * 109.57692 * 293.45455 * 25 24 23 44 44 H 1.09007 * 109.67844 * 173.13722 * 25 24 23 45 45 H 1.09004 * 109.39380 * 311.14355 * 26 21 20 46 46 H 1.08993 * 109.39101 * 70.94271 * 26 21 20 47 47 H 1.08994 * 109.58875 * 173.65193 * 27 14 13 48 48 H 1.09006 * 109.58945 * 293.93448 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 1 0.6248 -2.5577 -0.8907 11 6 2.2446 -3.6632 0.0025 12 6 1.4801 -4.9886 -0.0309 13 6 0.6027 -5.0989 1.2253 14 7 -0.2560 -3.9091 1.3013 15 6 -1.5926 -4.0335 1.4213 16 8 -2.3038 -3.0545 1.3297 17 6 -2.1990 -5.3773 1.6670 18 8 -1.4852 -6.3352 1.8804 19 7 -3.5386 -5.5251 1.6516 20 6 -4.1329 -6.8421 1.8930 21 6 -5.6577 -6.7333 1.8276 22 6 -6.1466 -5.8382 2.9624 23 6 -7.6244 -5.4941 2.7566 24 16 -8.5986 -7.0266 2.8301 25 6 -7.7592 -8.0752 1.6057 26 6 -6.2662 -8.1279 1.9405 27 6 0.3706 -2.5812 1.2504 28 1 -0.4850 0.8399 0.0004 29 1 2.8887 -3.5933 -0.8740 30 1 2.8537 -3.6184 0.9053 31 1 0.8517 -5.0237 -0.9209 32 1 2.1885 -5.8168 -0.0523 33 1 1.2344 -5.1509 2.1121 34 1 -0.0169 -5.9934 1.1626 35 1 -4.1092 -4.7586 1.4850 36 1 -3.7858 -7.5423 1.1331 37 1 -3.8362 -7.1995 2.8791 38 1 -5.9453 -6.2924 0.8732 39 1 -6.0245 -6.3589 3.9122 40 1 -5.5602 -4.9195 2.9769 41 1 -7.7579 -5.0227 1.7829 42 1 -7.9553 -4.8129 3.5405 43 1 -7.8955 -7.6542 0.6096 44 1 -8.1763 -9.0818 1.6370 45 1 -5.7630 -8.7998 1.2452 46 1 -6.1377 -8.4975 2.9578 47 1 -0.4022 -1.8140 1.2042 48 1 0.9817 -2.4311 2.1405 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334032269.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:18 Heat of formation + Delta-G solvation = -95.649648 kcal Electronic energy + Delta-G solvation = -27921.858467 eV Core-core repulsion = 24101.668305 eV Total energy + Delta-G solvation = -3820.190162 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.94376 -40.02387 -38.71949 -38.48022 -35.62497 -34.96968 -33.44945 -32.48649 -31.56955 -30.27467 -27.64949 -26.82932 -25.36036 -24.22291 -23.58489 -23.27025 -21.73350 -21.30540 -20.42181 -18.85061 -18.25861 -17.97099 -17.81199 -17.11871 -16.84072 -16.43395 -16.18117 -15.83483 -15.52594 -15.36274 -15.11963 -14.84340 -14.79066 -14.66045 -14.53440 -14.37161 -13.94515 -13.81398 -13.71439 -13.49036 -13.27749 -12.98088 -12.89528 -12.47281 -12.40371 -12.31522 -12.29672 -12.15634 -11.85226 -11.74559 -11.62771 -11.33751 -11.13479 -10.98354 -10.63189 -10.55327 -10.36485 -10.07589 -9.54199 -8.68963 -8.11826 -6.28449 0.36797 0.83957 1.34948 1.41703 1.42731 1.53976 1.61118 2.14777 2.41074 2.58130 3.16205 3.32595 3.43909 3.63074 3.78846 4.00937 4.12894 4.17172 4.20353 4.24663 4.33314 4.38128 4.48756 4.58964 4.60146 4.70252 4.71224 4.78401 4.80045 4.81539 4.84322 4.94288 5.01266 5.06206 5.13055 5.15002 5.22965 5.25232 5.31044 5.36439 5.49488 5.57372 5.84375 5.93974 5.99420 6.30042 6.43661 6.72918 6.83743 6.99281 7.41429 8.91987 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018883 B = 0.002326 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.457863 B =12035.174036 C =13236.496433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.011 3.989 3 Si 0.958 3.042 4 H -0.263 1.263 5 H -0.283 1.283 6 H -0.281 1.281 7 C -0.535 4.535 8 H 0.062 0.938 9 C 0.039 3.961 10 H -0.011 1.011 11 C -0.107 4.107 12 C -0.126 4.126 13 C 0.071 3.929 14 N -0.577 5.577 15 C 0.483 3.517 16 O -0.558 6.558 17 C 0.520 3.480 18 O -0.522 6.522 19 N -0.688 5.688 20 C 0.124 3.876 21 C -0.100 4.100 22 C -0.120 4.120 23 C -0.072 4.072 24 S -0.317 6.317 25 C -0.069 4.069 26 C -0.109 4.109 27 C 0.120 3.880 28 H 0.261 0.739 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.100 0.900 33 H 0.073 0.927 34 H 0.140 0.860 35 H 0.416 0.584 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.089 0.911 42 H 0.107 0.893 43 H 0.090 0.910 44 H 0.118 0.882 45 H 0.097 0.903 46 H 0.080 0.920 47 H 0.086 0.914 48 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.058 -18.707 4.357 23.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.188 4.188 3 Si 0.783 3.217 4 H -0.187 1.187 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.573 4.573 8 H 0.080 0.920 9 C 0.020 3.980 10 H 0.008 0.992 11 C -0.145 4.145 12 C -0.164 4.164 13 C -0.049 4.049 14 N -0.308 5.308 15 C 0.266 3.734 16 O -0.437 6.437 17 C 0.301 3.699 18 O -0.401 6.401 19 N -0.340 5.340 20 C 0.002 3.998 21 C -0.119 4.119 22 C -0.159 4.159 23 C -0.220 4.220 24 S -0.091 6.091 25 C -0.217 4.217 26 C -0.148 4.148 27 C -0.002 4.002 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.118 0.882 33 H 0.091 0.909 34 H 0.157 0.843 35 H 0.253 0.747 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.104 0.896 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.107 0.893 42 H 0.125 0.875 43 H 0.109 0.891 44 H 0.136 0.864 45 H 0.116 0.884 46 H 0.099 0.901 47 H 0.104 0.896 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -13.981 -19.008 5.093 24.140 hybrid contribution 1.045 2.203 -0.858 2.585 sum -12.936 -16.806 4.235 21.627 Atomic orbital electron populations 1.70059 1.07278 1.27291 1.50555 1.25871 0.95626 1.02807 0.94528 0.85505 0.79220 0.79456 0.77480 1.18662 1.20847 1.20721 1.21512 0.93314 0.91311 1.51162 0.91978 1.18900 0.93071 0.93865 0.92182 0.99235 1.21552 0.97755 0.94126 1.01021 1.22003 0.98878 0.98284 0.97189 1.23016 0.94671 0.88737 0.98510 1.48461 1.05384 1.09785 1.67196 1.20593 0.83624 0.89870 0.79324 1.90748 1.60953 1.40852 1.51135 1.19870 0.84000 0.87910 0.78131 1.90455 1.59729 1.41014 1.48880 1.45849 1.05139 1.13739 1.69310 1.21674 0.92460 0.82707 1.02923 1.21357 0.92896 0.97554 1.00096 1.21811 0.94085 1.00449 0.99511 1.23436 0.96470 0.95753 1.06329 1.87132 1.47539 1.16826 1.57634 1.23482 0.97322 1.01984 0.98952 1.21649 0.93363 0.95581 1.04210 1.21948 0.97609 0.82006 0.98587 0.92984 0.92768 0.92443 0.93236 0.88174 0.90920 0.84335 0.74697 0.89784 0.90398 0.89607 0.90240 0.90839 0.89260 0.87453 0.89121 0.86406 0.88442 0.90096 0.89610 0.93727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.20 11.39 21.45 0.24 -53.95 16 2 C 0.01 0.62 5.30 84.66 0.45 1.07 16 3 Si 0.96 43.69 29.54 68.60 2.03 45.72 16 4 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 7 C -0.53 -29.25 8.57 25.60 0.22 -29.03 16 8 H 0.06 3.29 7.74 -2.91 -0.02 3.26 16 9 C 0.04 1.98 2.25 -11.46 -0.03 1.95 16 10 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 11 C -0.11 -4.26 5.11 30.62 0.16 -4.10 16 12 C -0.13 -4.10 6.10 30.82 0.19 -3.91 16 13 C 0.07 2.39 6.01 86.51 0.52 2.91 16 14 N -0.58 -23.93 2.97 -819.62 -2.43 -26.36 16 15 C 0.48 19.32 7.73 87.27 0.67 19.99 16 16 O -0.56 -25.89 15.93 -3.25 -0.05 -25.94 16 17 C 0.52 15.82 7.74 87.27 0.68 16.50 16 18 O -0.52 -16.10 13.18 -3.25 -0.04 -16.14 16 19 N -0.69 -15.36 5.14 -464.40 -2.39 -17.74 16 20 C 0.12 1.89 5.03 86.38 0.43 2.32 16 21 C -0.10 -1.12 1.97 -11.07 -0.02 -1.14 16 22 C -0.12 -1.53 5.00 30.49 0.15 -1.38 16 23 C -0.07 -0.95 6.46 72.02 0.47 -0.49 16 24 S -0.32 -4.83 22.33 -56.49 -1.26 -6.09 16 25 C -0.07 -0.67 6.45 72.01 0.46 -0.20 16 26 C -0.11 -0.92 5.05 30.49 0.15 -0.77 16 27 C 0.12 5.97 5.41 86.37 0.47 6.43 16 28 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 29 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 33 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.14 4.36 4.30 -48.53 -0.21 4.15 16 35 H 0.42 9.07 7.12 -92.71 -0.66 8.41 16 36 H 0.08 1.21 8.08 -2.38 -0.02 1.19 16 37 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.09 0.95 8.08 -2.39 -0.02 0.93 16 39 H 0.08 1.06 8.05 -2.38 -0.02 1.04 16 40 H 0.07 1.07 6.89 -2.39 -0.02 1.05 16 41 H 0.09 1.11 8.14 -2.39 -0.02 1.10 16 42 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.12 0.89 8.14 -2.38 -0.02 0.87 16 45 H 0.10 0.57 8.04 -2.38 -0.02 0.55 16 46 H 0.08 0.74 8.05 -2.39 -0.02 0.72 16 47 H 0.09 4.97 5.12 -2.39 -0.01 4.96 16 48 H 0.04 2.19 8.14 -2.38 -0.02 2.17 16 Total: -1.00 -68.35 383.46 1.17 -67.18 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: 0.10 Total: 23.18 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: 4.97 Total: 10.16 kcal Atomic # 7 Polarization: -93.49 SS G_CDS: -4.57 Total: -98.06 kcal Atomic # 8 Polarization: -41.99 SS G_CDS: -0.09 Total: -42.09 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 16 Polarization: -4.83 SS G_CDS: -1.26 Total: -6.09 kcal Total: -68.35 1.17 -67.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334032269.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.469 kcal (2) G-P(sol) polarization free energy of solvation -68.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds