Wall clock time and date at job start Tue Mar 31 2020 22:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86801 * 119.99985 * 2 1 4 4 H 1.48499 * 109.47277 * 240.00112 * 3 2 1 5 5 H 1.48501 * 109.46798 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47304 * 119.99466 * 3 2 1 7 7 C 1.38799 * 120.00064 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99882 * 180.02562 * 7 2 1 9 9 S 1.76197 * 120.00272 * 0.02562 * 7 2 1 10 10 C 1.81002 * 100.00017 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.46671 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00460 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99904 * 179.97438 * 11 10 9 14 14 C 1.42109 * 121.47475 * 179.97438 * 13 11 10 15 15 C 1.56368 * 114.62339 * 276.14071 * 14 13 11 16 16 C 1.56372 * 107.27150 * 322.05643 * 15 14 13 17 17 N 1.42110 * 114.62646 * 322.06395 * 16 15 14 18 18 C 1.34770 * 121.47319 * 276.11825 * 17 16 15 19 19 O 1.21282 * 120.00292 * 0.02562 * 18 17 16 20 20 C 1.50699 * 119.99994 * 180.02562 * 18 17 16 21 21 C 1.54276 * 110.03131 * 297.90692 * 20 18 17 22 22 C 1.54965 * 104.15963 * 217.13848 * 21 20 18 23 23 C 1.54889 * 102.77707 * 37.88655 * 22 21 20 24 24 C 1.53878 * 110.03452 * 180.69368 * 20 18 17 25 25 C 1.48549 * 117.05217 * 96.12390 * 17 16 15 26 26 C 1.45876 * 109.64016 * 279.57177 * 25 17 16 27 27 H 0.96997 * 120.00364 * 0.02562 * 1 2 3 28 28 H 1.08991 * 109.47462 * 60.00033 * 10 9 7 29 29 H 1.08998 * 109.46986 * 299.99351 * 10 9 7 30 30 H 1.09002 * 108.45221 * 37.47028 * 14 13 11 31 31 H 1.08996 * 108.44886 * 154.80539 * 14 13 11 32 32 H 1.08992 * 109.89735 * 81.49851 * 15 14 13 33 33 H 1.08999 * 109.89346 * 202.54170 * 15 14 13 34 34 H 1.09000 * 108.44847 * 83.39537 * 16 15 14 35 35 H 1.08996 * 108.45006 * 200.72791 * 16 15 14 36 36 H 1.08994 * 110.01947 * 59.29666 * 20 18 17 37 37 H 1.09004 * 110.48418 * 335.78252 * 21 20 18 38 38 H 1.08999 * 110.48502 * 98.42855 * 21 20 18 39 39 H 1.08998 * 110.71527 * 279.57374 * 22 21 20 40 40 H 1.09002 * 110.76122 * 156.22351 * 22 21 20 41 41 H 1.09004 * 110.48419 * 203.40230 * 23 22 21 42 42 H 1.08997 * 110.48489 * 80.76359 * 23 22 21 43 43 H 1.09000 * 110.03438 * 238.56780 * 24 20 18 44 44 H 1.09003 * 110.03414 * 359.97438 * 24 20 18 45 45 H 1.08996 * 109.44661 * 159.51955 * 25 17 16 46 46 H 1.08998 * 109.44581 * 39.61796 * 25 17 16 47 47 H 1.08998 * 109.43824 * 173.98409 * 26 25 17 48 48 H 1.08991 * 109.43969 * 293.87554 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1294 -2.7280 0.0005 10 6 2.5160 -3.8914 0.0021 11 6 1.9875 -5.3027 0.0017 12 8 0.7912 -5.5023 0.0009 13 7 2.8443 -6.3431 0.0022 14 6 2.3804 -7.6863 0.0024 15 6 2.0235 -8.2522 1.4157 16 6 3.0801 -7.6891 2.4216 17 7 4.4021 -7.6057 1.9068 18 6 5.2293 -8.6697 1.9163 19 8 4.8504 -9.7284 2.3706 20 6 6.6251 -8.5439 1.3622 21 6 6.5681 -8.1920 -0.1388 22 6 7.7485 -8.9820 -0.7585 23 6 7.7222 -10.3135 0.0323 24 6 7.3589 -9.8920 1.4711 25 6 4.8320 -6.2940 1.3581 26 6 4.3154 -6.1363 0.0030 27 1 -0.4850 0.8400 -0.0004 28 1 3.1239 -3.7309 0.8924 29 1 3.1252 -3.7317 -0.8875 30 1 1.4923 -7.7447 -0.6269 31 1 3.1522 -8.3179 -0.4374 32 1 1.0249 -7.9250 1.7050 33 1 2.0672 -9.3412 1.4011 34 1 2.7662 -6.6917 2.7293 35 1 3.0929 -8.3299 3.3032 36 1 7.1742 -7.7749 1.9053 37 1 5.6222 -8.5181 -0.5714 38 1 6.7064 -7.1207 -0.2850 39 1 8.6900 -8.4565 -0.5990 40 1 7.5792 -9.1599 -1.8205 41 1 8.7025 -10.7897 0.0103 42 1 6.9629 -10.9826 -0.3724 43 1 8.2647 -9.7771 2.0664 44 1 6.7057 -10.6372 1.9251 45 1 5.9208 -6.2478 1.3389 46 1 4.4464 -5.4929 1.9887 47 1 4.5409 -5.1324 -0.3567 48 1 4.7853 -6.8699 -0.6520 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350763439.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:42 Heat of formation + Delta-G solvation = -88.591912 kcal Electronic energy + Delta-G solvation = -28706.168387 eV Core-core repulsion = 24886.284271 eV Total energy + Delta-G solvation = -3819.884116 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.11833 -40.71736 -38.47719 -37.90865 -35.59734 -34.54901 -34.27298 -31.20775 -30.48415 -29.60383 -29.32738 -27.68774 -26.84340 -24.47165 -23.90943 -21.99198 -21.36773 -20.39455 -19.84333 -19.16917 -18.63121 -18.05584 -17.54483 -17.11329 -16.84373 -16.53235 -16.37212 -16.10742 -15.82395 -15.63880 -15.11038 -14.90186 -14.70277 -14.47657 -14.38150 -14.19109 -14.10522 -13.61853 -13.20678 -13.08961 -12.84783 -12.76360 -12.72555 -12.60920 -12.49001 -12.31379 -12.18772 -11.93593 -11.91281 -11.77138 -11.67756 -11.58389 -11.36457 -11.09386 -10.89059 -10.75462 -10.21575 -9.92905 -9.64464 -8.63800 -8.31190 -6.09203 1.28358 1.46697 1.48819 1.54862 1.57274 1.61267 1.93896 2.14901 2.30839 3.03420 3.23780 3.34496 3.58815 3.64869 3.73447 3.80422 3.97672 4.05631 4.06388 4.18155 4.21790 4.29999 4.34703 4.41000 4.48512 4.51004 4.54929 4.58099 4.68749 4.71154 4.71494 4.79071 4.81126 4.86463 4.93494 4.96393 5.00438 5.14245 5.28113 5.29163 5.39620 5.45303 5.51718 5.57804 5.62329 6.22522 6.24909 6.41450 7.10373 7.15608 7.16991 8.77633 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017450 B = 0.002779 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.156983 B =10072.077276 C =10918.169028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.012 3.988 3 Si 0.997 3.003 4 H -0.260 1.260 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.541 4.541 8 H 0.088 0.912 9 S -0.158 6.158 10 C -0.122 4.122 11 C 0.535 3.465 12 O -0.562 6.562 13 N -0.593 5.593 14 C 0.123 3.877 15 C -0.144 4.144 16 C 0.120 3.880 17 N -0.594 5.594 18 C 0.519 3.481 19 O -0.579 6.579 20 C -0.107 4.107 21 C -0.120 4.120 22 C -0.119 4.119 23 C -0.125 4.125 24 C -0.121 4.121 25 C 0.081 3.919 26 C 0.070 3.930 27 H 0.270 0.730 28 H 0.113 0.887 29 H 0.114 0.886 30 H 0.050 0.950 31 H 0.086 0.914 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.125 0.875 37 H 0.060 0.940 38 H 0.105 0.895 39 H 0.086 0.914 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.051 0.949 43 H 0.079 0.921 44 H 0.058 0.942 45 H 0.138 0.862 46 H 0.084 0.916 47 H 0.118 0.882 48 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.940 -16.696 0.023 27.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.193 4.193 3 Si 0.819 3.181 4 H -0.185 1.185 5 H -0.210 1.210 6 H -0.185 1.185 7 C -0.689 4.689 8 H 0.106 0.894 9 S 0.069 5.931 10 C -0.273 4.273 11 C 0.324 3.676 12 O -0.440 6.440 13 N -0.326 5.326 14 C -0.002 4.002 15 C -0.184 4.184 16 C -0.006 4.006 17 N -0.325 5.325 18 C 0.310 3.690 19 O -0.459 6.459 20 C -0.128 4.128 21 C -0.157 4.157 22 C -0.156 4.156 23 C -0.163 4.163 24 C -0.159 4.159 25 C -0.041 4.041 26 C -0.051 4.051 27 H 0.078 0.922 28 H 0.131 0.869 29 H 0.132 0.868 30 H 0.069 0.931 31 H 0.105 0.895 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.143 0.857 37 H 0.079 0.921 38 H 0.123 0.877 39 H 0.104 0.896 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.070 0.930 43 H 0.098 0.902 44 H 0.076 0.924 45 H 0.156 0.844 46 H 0.103 0.897 47 H 0.136 0.864 48 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 19.829 -17.454 0.266 26.418 hybrid contribution 0.654 0.951 0.294 1.191 sum 20.483 -16.503 0.559 26.310 Atomic orbital electron populations 1.70187 1.08085 1.28565 1.48212 1.26128 0.95889 1.03372 0.93872 0.85020 0.77775 0.75705 0.79616 1.18461 1.20957 1.18483 1.23165 0.95438 0.91693 1.58562 0.89414 1.85730 1.10868 0.99491 1.97038 1.23361 1.03364 0.93688 1.06838 1.20184 0.85798 0.86656 0.74991 1.90702 1.17438 1.85839 1.49999 1.47182 1.07437 1.04726 1.73258 1.20882 1.00248 0.82598 0.96502 1.23469 0.98623 1.00618 0.95735 1.20818 0.82787 1.01144 0.95831 1.47284 1.12375 1.11667 1.61137 1.21232 0.88360 0.82158 0.77278 1.90658 1.77952 1.29060 1.48196 1.22025 0.90876 1.01091 0.98836 1.22726 0.99344 1.02391 0.91275 1.22523 0.98612 0.95041 0.99450 1.22365 1.01423 0.98084 0.94422 1.22158 0.99975 0.95438 0.98312 1.21510 1.03550 0.83984 0.95055 1.21814 0.78051 1.06452 0.98821 0.92156 0.86903 0.86797 0.93131 0.89547 0.91985 0.90525 0.91602 0.92382 0.85746 0.92086 0.87668 0.89553 0.90787 0.90591 0.93043 0.90197 0.92368 0.84431 0.89738 0.86388 0.86971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.19 13.22 21.65 0.29 -54.90 16 2 C 0.01 0.66 5.49 84.86 0.47 1.12 16 3 Si 1.00 41.89 29.55 68.60 2.03 43.92 16 4 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 5 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 6 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 7 C -0.54 -29.35 9.50 67.95 0.65 -28.71 16 8 H 0.09 4.30 7.80 -2.91 -0.02 4.28 16 9 S -0.16 -8.45 20.57 -56.49 -1.16 -9.61 16 10 C -0.12 -4.36 4.66 71.24 0.33 -4.02 16 11 C 0.54 18.68 7.72 87.66 0.68 19.36 16 12 O -0.56 -25.54 15.62 -3.04 -0.05 -25.59 16 13 N -0.59 -14.29 2.24 -832.73 -1.87 -16.16 16 14 C 0.12 2.98 5.14 88.36 0.45 3.43 16 15 C -0.14 -3.59 6.98 32.94 0.23 -3.36 16 16 C 0.12 2.78 5.14 88.36 0.45 3.23 16 17 N -0.59 -10.61 2.24 -832.75 -1.87 -12.47 16 18 C 0.52 10.08 6.93 87.66 0.61 10.68 16 19 O -0.58 -16.43 14.97 -3.04 -0.05 -16.47 16 20 C -0.11 -1.22 2.43 -10.81 -0.03 -1.24 16 21 C -0.12 -0.91 4.07 31.70 0.13 -0.78 16 22 C -0.12 -0.84 6.91 31.91 0.22 -0.62 16 23 C -0.13 -1.35 6.83 31.67 0.22 -1.14 16 24 C -0.12 -1.62 6.40 31.32 0.20 -1.42 16 25 C 0.08 0.95 5.11 83.80 0.43 1.38 16 26 C 0.07 0.94 5.20 83.80 0.44 1.38 16 27 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 28 H 0.11 3.49 8.14 -2.40 -0.02 3.47 16 29 H 0.11 3.54 7.55 -2.40 -0.02 3.52 16 30 H 0.05 1.46 7.62 -2.39 -0.02 1.44 16 31 H 0.09 1.71 7.62 -2.39 -0.02 1.69 16 32 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.07 1.62 7.62 -2.39 -0.02 1.60 16 35 H 0.06 1.47 7.62 -2.39 -0.02 1.46 16 36 H 0.12 0.82 7.53 -2.39 -0.02 0.80 16 37 H 0.06 0.64 6.75 -2.39 -0.02 0.62 16 38 H 0.10 0.25 6.20 -2.39 -0.01 0.24 16 39 H 0.09 0.39 8.14 -2.39 -0.02 0.38 16 40 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 41 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.06 1.17 6.39 -2.39 -0.02 1.16 16 45 H 0.14 0.58 5.39 -2.39 -0.01 0.57 16 46 H 0.08 1.15 7.80 -2.39 -0.02 1.13 16 47 H 0.12 1.29 6.38 -2.39 -0.02 1.28 16 48 H 0.11 1.04 4.51 -2.39 -0.01 1.03 16 Total: -1.00 -80.70 378.44 3.75 -76.95 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: 0.96 Total: 15.05 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: 5.47 Total: -0.71 kcal Atomic # 7 Polarization: -80.08 SS G_CDS: -3.45 Total: -83.53 kcal Atomic # 8 Polarization: -41.97 SS G_CDS: -0.09 Total: -42.06 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Atomic # 16 Polarization: -8.45 SS G_CDS: -1.16 Total: -9.61 kcal Total: -80.70 3.75 -76.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350763439.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.645 kcal (2) G-P(sol) polarization free energy of solvation -80.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds