Wall clock time and date at job start Wed Apr 1 2020 00:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86800 * 120.00244 * 2 1 4 4 H 1.48498 * 109.47155 * 270.00250 * 3 2 1 5 5 H 1.48499 * 109.47156 * 30.00557 * 3 2 1 6 6 H 1.48506 * 109.47058 * 150.00458 * 3 2 1 7 7 C 1.38801 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00485 * 179.97438 * 7 2 1 9 9 S 1.76204 * 119.99748 * 359.97438 * 7 2 1 10 10 C 1.81005 * 100.00029 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47046 * 179.97438 * 10 9 7 12 12 O 1.21285 * 120.00282 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99897 * 179.97438 * 11 10 9 14 14 C 1.46501 * 120.00086 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.47120 * 180.02562 * 14 13 11 16 16 C 1.52997 * 109.46931 * 174.74134 * 15 14 13 17 17 H 1.08998 * 109.58863 * 301.33485 * 16 15 14 18 18 C 1.53195 * 109.58801 * 61.76436 * 16 15 14 19 19 C 1.53040 * 109.31114 * 174.41878 * 18 16 15 20 20 C 1.53042 * 109.54082 * 298.63416 * 19 18 16 21 21 C 1.53188 * 109.31008 * 61.36737 * 20 19 18 22 22 N 1.46924 * 108.77497 * 305.36180 * 21 20 19 23 23 C 1.34784 * 120.63324 * 233.58805 * 22 21 20 24 24 O 1.21280 * 119.99963 * 174.91883 * 23 22 21 25 25 C 1.50700 * 119.99803 * 354.91381 * 23 22 21 26 26 C 1.53001 * 117.50036 * 248.74839 * 25 23 22 27 27 C 1.52999 * 117.49809 * 180.08716 * 25 23 22 28 28 H 0.97007 * 119.99579 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.46739 * 60.00320 * 10 9 7 30 30 H 1.08995 * 109.46697 * 300.00110 * 10 9 7 31 31 H 0.97003 * 119.99996 * 0.02562 * 13 11 10 32 32 H 1.08994 * 109.47288 * 60.00104 * 14 13 11 33 33 H 1.09003 * 109.46893 * 300.00355 * 14 13 11 34 34 H 1.08997 * 109.47012 * 54.74152 * 15 14 13 35 35 H 1.08996 * 109.47030 * 294.74162 * 15 14 13 36 36 H 1.09002 * 109.49445 * 294.37488 * 18 16 15 37 37 H 1.08997 * 109.49765 * 54.43388 * 18 16 15 38 38 H 1.09003 * 109.45927 * 58.65702 * 19 18 16 39 39 H 1.09002 * 109.45961 * 178.60951 * 19 18 16 40 40 H 1.08999 * 109.49379 * 301.41402 * 20 19 18 41 41 H 1.09001 * 109.49374 * 181.31997 * 20 19 18 42 42 H 1.09008 * 109.58392 * 185.57874 * 21 20 19 43 43 H 1.08991 * 109.59013 * 65.15249 * 21 20 19 44 44 H 1.09001 * 115.54996 * 34.41782 * 25 23 22 45 45 H 1.09004 * 117.49689 * 359.97438 * 26 25 23 46 46 H 1.08995 * 117.49739 * 145.02136 * 26 25 23 47 47 H 1.09004 * 117.49399 * 214.97971 * 27 25 23 48 48 H 1.08995 * 117.49741 * 359.97375 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4479 2.6526 0.7001 6 1 3.5480 1.4400 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5157 -3.8916 -0.0021 11 6 1.9871 -5.3028 -0.0017 12 8 0.7908 -5.5023 -0.0009 13 7 2.8438 -6.3432 -0.0033 14 6 2.3300 -7.7152 -0.0034 15 6 3.5020 -8.6987 -0.0046 16 6 2.9693 -10.1269 0.1274 17 1 2.3948 -10.2189 1.0491 18 6 2.0759 -10.4549 -1.0731 19 6 1.6597 -11.9261 -1.0072 20 6 2.9045 -12.8138 -1.0748 21 6 3.8073 -12.5125 0.1256 22 7 4.0942 -11.0718 0.1517 23 6 5.3651 -10.6254 0.1978 24 8 5.5932 -9.4364 0.1260 25 6 6.5027 -11.6037 0.3386 26 6 7.2797 -11.5989 1.6566 27 6 7.9221 -11.0345 0.3869 28 1 -0.4850 0.8401 0.0004 29 1 3.1249 -3.7319 0.8875 30 1 3.1235 -3.7311 -0.8925 31 1 3.8006 -6.1837 -0.0043 32 1 1.7204 -7.8748 -0.8928 33 1 1.7223 -7.8757 0.8872 34 1 4.1622 -8.4782 0.8341 35 1 4.0561 -8.6024 -0.9383 36 1 1.1874 -9.8239 -1.0484 37 1 2.6258 -10.2728 -1.9964 38 1 1.1311 -12.1125 -0.0723 39 1 1.0037 -12.1559 -1.8469 40 1 3.4468 -12.6101 -1.9981 41 1 2.6057 -13.8617 -1.0515 42 1 4.7397 -13.0691 0.0303 43 1 3.2997 -12.8008 1.0460 44 1 6.3619 -12.5632 -0.1591 45 1 6.9683 -10.8878 2.4218 46 1 7.6504 -12.5551 2.0258 47 1 8.7151 -11.6198 -0.0786 48 1 8.0330 -9.9525 0.3165 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001357059189.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:27 Heat of formation + Delta-G solvation = -43.695238 kcal Electronic energy + Delta-G solvation = -26994.775426 eV Core-core repulsion = 23176.838176 eV Total energy + Delta-G solvation = -3817.937250 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.10042 -39.03116 -38.23296 -36.52990 -35.19668 -33.27212 -32.75789 -32.37850 -29.84936 -28.12380 -26.12049 -25.41259 -24.68634 -23.46333 -22.86483 -21.57237 -21.02638 -20.22824 -19.18672 -17.86449 -17.45813 -16.62505 -16.12464 -16.10218 -15.63854 -15.45588 -14.98680 -14.80564 -14.75942 -14.62211 -14.35609 -13.98459 -13.79664 -13.64073 -13.24358 -12.99265 -12.85413 -12.71234 -12.41972 -12.10322 -11.98001 -11.89248 -11.65874 -11.42718 -11.19785 -11.06369 -11.02346 -11.01119 -10.97341 -10.92247 -10.82648 -10.71026 -9.76368 -9.36124 -9.29366 -9.02170 -8.92317 -8.72204 -8.17339 -6.44053 -6.16886 -3.86723 2.12884 2.48525 3.13380 3.21577 3.26083 3.31809 3.37722 3.41934 3.80023 4.04513 4.19124 4.25423 4.37742 4.38767 4.43880 4.46150 4.56744 4.61750 4.81659 4.91442 4.97159 5.10258 5.14666 5.15166 5.18123 5.23593 5.29124 5.33580 5.37637 5.47459 5.49555 5.52962 5.60620 5.66671 5.69988 5.71295 5.80730 5.90862 5.98076 6.07569 6.15475 6.23315 6.40460 6.78058 7.02413 7.64655 7.83830 7.89030 8.40412 8.73795 9.28404 10.90564 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017791 B = 0.002000 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.463035 B =13997.478670 C =15357.815630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.072 3.928 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.534 4.534 8 H 0.072 0.928 9 S -0.062 6.062 10 C -0.153 4.153 11 C 0.531 3.469 12 O -0.522 6.522 13 N -0.735 5.735 14 C 0.114 3.886 15 C -0.119 4.119 16 C 0.152 3.848 17 H 0.077 0.923 18 C -0.137 4.137 19 C -0.121 4.121 20 C -0.137 4.137 21 C 0.107 3.893 22 N -0.605 5.605 23 C 0.543 3.457 24 O -0.528 6.528 25 C -0.200 4.200 26 C -0.152 4.152 27 C -0.148 4.148 28 H 0.268 0.732 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.399 0.601 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.075 0.925 42 H 0.087 0.913 43 H 0.070 0.930 44 H 0.122 0.878 45 H 0.100 0.900 46 H 0.103 0.897 47 H 0.102 0.898 48 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.050 -32.575 0.314 35.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.137 4.137 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.682 4.682 8 H 0.091 0.909 9 S 0.165 5.835 10 C -0.304 4.304 11 C 0.317 3.683 12 O -0.396 6.396 13 N -0.389 5.389 14 C -0.011 4.011 15 C -0.156 4.156 16 C 0.049 3.951 17 H 0.095 0.905 18 C -0.175 4.175 19 C -0.159 4.159 20 C -0.175 4.175 21 C -0.015 4.015 22 N -0.339 5.339 23 C 0.332 3.668 24 O -0.405 6.405 25 C -0.221 4.221 26 C -0.189 4.189 27 C -0.185 4.185 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.233 0.767 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.112 0.888 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.105 0.895 43 H 0.089 0.911 44 H 0.140 0.860 45 H 0.118 0.882 46 H 0.121 0.879 47 H 0.120 0.880 48 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 10.987 -32.173 0.282 33.998 hybrid contribution 2.290 1.083 -0.098 2.535 sum 13.277 -31.090 0.184 33.807 Atomic orbital electron populations 1.70027 1.05938 1.27366 1.47031 1.24996 0.95036 0.99016 0.94615 0.86166 0.79416 0.81577 0.78323 1.20292 1.20780 1.19701 1.22880 0.94931 0.91690 1.58721 0.90939 1.85361 1.05127 0.96300 1.96707 1.23528 1.06432 0.95478 1.04921 1.20291 0.86524 0.86306 0.75200 1.90686 1.15386 1.85689 1.47874 1.45954 1.10039 1.05425 1.77520 1.21440 0.96411 0.81460 1.01813 1.22343 0.96382 0.91281 1.05641 1.21240 0.86573 0.88708 0.98577 0.90544 1.22100 1.00170 0.96798 0.98452 1.21525 0.97135 0.94636 1.02555 1.21942 0.96892 1.00158 0.98498 1.21800 1.00400 0.80486 0.98858 1.48050 1.05353 1.07041 1.73410 1.19669 0.82857 0.88590 0.75710 1.90762 1.83830 1.16325 1.49549 1.22310 0.93127 1.01202 1.05425 1.22940 1.01923 1.03466 0.90589 1.22978 0.92706 1.02596 1.00231 0.92244 0.89262 0.89255 0.76665 0.91900 0.92126 0.88768 0.90106 0.89902 0.91242 0.91579 0.91382 0.91418 0.90599 0.89502 0.91132 0.85978 0.88194 0.87857 0.87992 0.87251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.71 13.22 55.49 0.73 -25.98 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.91 29.55 -169.99 -5.02 16.89 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.53 -15.65 9.50 30.94 0.29 -15.36 16 8 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 9 S -0.06 -1.73 20.57 -107.50 -2.21 -3.94 16 10 C -0.15 -3.29 6.16 36.00 0.22 -3.06 16 11 C 0.53 10.69 7.85 -10.99 -0.09 10.60 16 12 O -0.52 -12.48 15.86 5.55 0.09 -12.39 16 13 N -0.74 -11.24 5.56 -60.29 -0.33 -11.57 16 14 C 0.11 1.49 5.22 -4.04 -0.02 1.47 16 15 C -0.12 -1.30 3.24 -26.73 -0.09 -1.39 16 16 C 0.15 1.32 3.00 -67.60 -0.20 1.12 16 17 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 18 C -0.14 -1.06 4.90 -26.61 -0.13 -1.19 16 19 C -0.12 -0.69 5.88 -26.69 -0.16 -0.85 16 20 C -0.14 -0.62 6.08 -26.61 -0.16 -0.78 16 21 C 0.11 0.51 6.33 -3.71 -0.02 0.48 16 22 N -0.61 -4.65 2.97 -165.22 -0.49 -5.15 16 23 C 0.54 5.02 7.39 -10.98 -0.08 4.94 16 24 O -0.53 -6.55 11.66 5.56 0.06 -6.49 16 25 C -0.20 -1.27 5.25 -91.77 -0.48 -1.75 16 26 C -0.15 -0.84 10.24 -26.69 -0.27 -1.11 16 27 C -0.15 -0.93 10.05 -26.69 -0.27 -1.20 16 28 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 29 H 0.09 1.78 8.14 -51.92 -0.42 1.36 16 30 H 0.09 1.78 8.14 -51.92 -0.42 1.36 16 31 H 0.40 5.23 8.47 -40.82 -0.35 4.89 16 32 H 0.06 0.85 6.90 -51.93 -0.36 0.49 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.09 1.17 6.35 -51.93 -0.33 0.84 16 35 H 0.08 0.99 7.12 -51.93 -0.37 0.62 16 36 H 0.08 0.69 6.92 -51.93 -0.36 0.33 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 42 H 0.09 0.27 5.48 -51.92 -0.28 -0.01 16 43 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 44 H 0.12 0.51 6.38 -51.93 -0.33 0.18 16 45 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 46 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.11 0.89 7.67 -51.93 -0.40 0.50 16 LS Contribution 394.55 15.07 5.95 5.95 Total: -1.00 -36.35 394.55 -10.60 -46.95 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -7.82 Total: 1.80 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: -1.55 Total: -6.06 kcal Atomic # 7 Polarization: -42.60 SS G_CDS: -0.09 Total: -42.70 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: 0.15 Total: -18.88 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 16 Polarization: -1.73 SS G_CDS: -2.21 Total: -3.94 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -36.35 -10.60 -46.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001357059189.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.252 kcal (2) G-P(sol) polarization free energy of solvation -36.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds