Wall clock time and date at job start Tue Mar 31 2020 23:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86797 * 120.00226 * 2 1 4 4 H 1.48500 * 109.47048 * 274.66471 * 3 2 1 5 5 H 1.48498 * 109.47252 * 34.66428 * 3 2 1 6 6 H 1.48496 * 109.47461 * 154.66416 * 3 2 1 7 7 C 1.39951 * 119.99753 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99385 * 162.23207 * 7 2 1 9 9 C 1.41395 * 120.00207 * 342.22830 * 7 2 1 10 10 C 1.40707 * 120.24267 * 155.28681 * 9 7 2 11 11 C 1.37619 * 119.74375 * 180.02562 * 10 9 7 12 12 C 1.38639 * 120.24888 * 0.02865 * 11 10 9 13 13 C 1.50698 * 119.74967 * 179.97438 * 12 11 10 14 14 N 1.46501 * 109.47122 * 89.99659 * 13 12 11 15 15 C 1.34771 * 120.00098 * 179.97438 * 14 13 12 16 16 O 1.21588 * 119.99985 * 0.02562 * 15 14 13 17 17 N 1.34782 * 120.00237 * 180.02562 * 15 14 13 18 18 C 1.46501 * 119.99958 * 180.02562 * 17 15 14 19 19 H 1.08991 * 109.47218 * 35.00442 * 18 17 15 20 20 C 1.53004 * 109.47188 * 275.00302 * 18 17 15 21 21 O 1.42906 * 109.47002 * 295.00327 * 20 18 17 22 22 C 1.50705 * 109.46845 * 155.00486 * 18 17 15 23 23 C 1.38227 * 120.00042 * 39.72476 * 22 18 17 24 24 C 1.38235 * 119.99870 * 179.78669 * 23 22 18 25 25 C 1.38235 * 119.99967 * 0.44624 * 24 23 22 26 26 C 1.38229 * 119.99853 * 359.80800 * 25 24 23 27 27 C 1.38228 * 119.99576 * 219.99936 * 22 18 17 28 28 C 1.38635 * 120.49782 * 0.24803 * 12 11 10 29 29 C 1.37614 * 120.25107 * 359.44663 * 28 12 11 30 30 H 0.97004 * 119.99893 * 0.02562 * 1 2 3 31 31 H 1.07997 * 120.13074 * 0.02562 * 10 9 7 32 32 H 1.08000 * 119.87621 * 180.02562 * 11 10 9 33 33 H 1.08998 * 109.47087 * 209.99875 * 13 12 11 34 34 H 1.08994 * 109.47038 * 330.00134 * 13 12 11 35 35 H 0.97006 * 120.00433 * 0.02562 * 14 13 12 36 36 H 0.96998 * 119.99980 * 0.02562 * 17 15 14 37 37 H 1.08998 * 109.47315 * 55.00088 * 20 18 17 38 38 H 1.08998 * 109.47292 * 175.00118 * 20 18 17 39 39 H 0.96694 * 113.99757 * 180.02562 * 21 20 18 40 40 H 1.08008 * 120.00507 * 0.02562 * 23 22 18 41 41 H 1.08007 * 120.00185 * 180.26965 * 24 23 22 42 42 H 1.08000 * 119.99933 * 179.83031 * 25 24 23 43 43 H 1.08006 * 119.99990 * 180.02562 * 26 25 24 44 44 H 1.08000 * 120.00723 * 359.97438 * 27 22 18 45 45 H 1.08003 * 119.87291 * 179.69838 * 28 12 11 46 46 H 1.08002 * 120.12976 * 180.27263 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3911 2.1033 -1.3954 5 1 1.4925 2.6222 0.7963 6 1 3.5856 1.4137 0.5991 7 6 2.0079 -1.2120 -0.0005 8 1 3.0493 -1.2341 -0.2860 9 6 1.3515 -2.4075 0.3727 10 6 1.8217 -3.6492 -0.0930 11 6 1.1746 -4.8064 0.2762 12 6 0.0633 -4.7517 1.1032 13 6 -0.6370 -6.0257 1.5001 14 7 -0.0449 -6.5438 2.7359 15 6 -0.5149 -7.6825 3.2826 16 8 -1.4300 -8.2800 2.7498 17 7 0.0293 -8.1588 4.4199 18 6 -0.4812 -9.3969 5.0137 19 1 -0.7819 -10.0827 4.2218 20 6 -1.6885 -9.0784 5.8980 21 8 -1.2708 -8.2735 7.0025 22 6 0.5984 -10.0360 5.8487 23 6 1.4266 -9.2495 6.6273 24 6 2.4140 -9.8361 7.3966 25 6 2.5792 -11.2085 7.3801 26 6 1.7544 -11.9945 6.5974 27 6 0.7640 -11.4082 5.8315 28 6 -0.4120 -3.5333 1.5634 29 6 0.2229 -2.3640 1.2121 30 1 -0.4850 0.8401 -0.0004 31 1 2.6869 -3.6941 -0.7378 32 1 1.5339 -5.7607 -0.0797 33 1 -1.6958 -5.8233 1.6614 34 1 -0.5250 -6.7642 0.7063 35 1 0.6849 -6.0669 3.1613 36 1 0.7591 -7.6819 4.8451 37 1 -2.4333 -8.5367 5.3149 38 1 -2.1225 -10.0070 6.2688 39 1 -1.9864 -8.0331 7.6068 40 1 1.2997 -8.1770 6.6376 41 1 3.0583 -9.2220 8.0083 42 1 3.3524 -11.6665 7.9790 43 1 1.8831 -13.0668 6.5848 44 1 0.1196 -12.0224 5.2201 45 1 -1.2815 -3.5021 2.2032 46 1 -0.1465 -1.4163 1.5752 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434817970.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:21 Heat of formation + Delta-G solvation = -40.355255 kcal Electronic energy + Delta-G solvation = -27800.695890 eV Core-core repulsion = 23847.459521 eV Total energy + Delta-G solvation = -3953.236369 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.31625 -39.15768 -37.74273 -37.04029 -34.92036 -34.44723 -33.41139 -31.64556 -31.04176 -30.13784 -29.34741 -28.35913 -26.64364 -24.02966 -23.38283 -22.86809 -21.18266 -21.05153 -20.29268 -20.05519 -18.49831 -17.51558 -17.38376 -17.12198 -16.20078 -15.55715 -15.38406 -15.18389 -14.94099 -14.81472 -14.40977 -14.18586 -13.92349 -13.68918 -13.56293 -13.45168 -13.30067 -13.00937 -12.55183 -12.46603 -12.13205 -12.03075 -11.88788 -11.59080 -11.25499 -11.18467 -11.16722 -11.08895 -10.61378 -10.54909 -10.25281 -9.96085 -9.68691 -9.48136 -9.22089 -9.19062 -9.10097 -8.93190 -8.46659 -7.56210 -7.44533 -6.86388 -4.45764 1.09877 1.21046 2.51591 2.92231 2.99302 3.02131 3.06748 3.22196 3.43678 3.61744 3.85624 4.09631 4.38305 4.43434 4.67082 4.70111 4.78652 4.91801 5.02189 5.20726 5.27734 5.31100 5.47986 5.51577 5.60733 5.75011 5.82168 5.84606 5.96854 6.23161 6.26318 6.29320 6.30784 6.33956 6.38061 6.58495 6.77124 6.87532 6.92078 6.98392 7.16916 7.21634 7.27745 7.42593 7.52157 7.75479 7.96166 8.02924 8.20071 8.31261 8.54445 8.79345 8.85846 8.87535 10.07777 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017533 B = 0.001978 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.583994 B =14150.395164 C =14583.883016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.075 3.925 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.459 4.459 8 H 0.079 0.921 9 C 0.117 3.883 10 C -0.230 4.230 11 C -0.069 4.069 12 C -0.244 4.244 13 C 0.203 3.797 14 N -0.733 5.733 15 C 0.700 3.300 16 O -0.604 6.604 17 N -0.739 5.739 18 C 0.209 3.791 19 H 0.107 0.893 20 C 0.068 3.932 21 O -0.565 6.565 22 C -0.086 4.086 23 C -0.087 4.087 24 C -0.122 4.122 25 C -0.121 4.121 26 C -0.123 4.123 27 C -0.111 4.111 28 C -0.080 4.080 29 C -0.170 4.170 30 H 0.282 0.718 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.396 0.604 36 H 0.397 0.603 37 H 0.058 0.942 38 H 0.052 0.948 39 H 0.376 0.624 40 H 0.125 0.875 41 H 0.122 0.878 42 H 0.119 0.881 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.088 0.912 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.760 -16.617 14.762 22.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.143 4.143 3 Si 0.732 3.268 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.488 4.488 8 H 0.097 0.903 9 C 0.114 3.886 10 C -0.250 4.250 11 C -0.088 4.088 12 C -0.246 4.246 13 C 0.081 3.919 14 N -0.387 5.387 15 C 0.400 3.600 16 O -0.483 6.483 17 N -0.396 5.396 18 C 0.103 3.897 19 H 0.125 0.875 20 C -0.012 4.012 21 O -0.370 6.370 22 C -0.087 4.087 23 C -0.106 4.106 24 C -0.140 4.140 25 C -0.139 4.139 26 C -0.141 4.141 27 C -0.129 4.129 28 C -0.099 4.099 29 C -0.189 4.189 30 H 0.093 0.907 31 H 0.111 0.889 32 H 0.106 0.894 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.230 0.770 36 H 0.232 0.768 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.223 0.777 40 H 0.143 0.857 41 H 0.140 0.860 42 H 0.137 0.863 43 H 0.139 0.861 44 H 0.140 0.860 45 H 0.106 0.894 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.267 -17.051 13.908 22.006 hybrid contribution 0.399 1.309 0.600 1.494 sum 0.666 -15.742 14.508 21.418 Atomic orbital electron populations 1.69824 1.07652 1.29434 1.34271 1.25956 0.94748 1.01485 0.92147 0.86297 0.80770 0.80549 0.79149 1.19491 1.19959 1.18356 1.19649 0.98180 0.91272 1.39666 0.90300 1.17668 0.90872 0.92052 0.88007 1.20967 1.04002 0.92868 1.07115 1.20416 0.94894 0.96488 0.96991 1.18996 1.02538 0.92630 1.10404 1.19795 0.95616 0.92922 0.83577 1.45712 1.39729 1.24704 1.28512 1.16093 0.82214 0.81462 0.80196 1.90875 1.32167 1.60863 1.64445 1.45163 1.40559 1.27255 1.26601 1.19666 0.90762 0.85955 0.93281 0.87529 1.22618 0.96196 0.94363 0.87982 1.86473 1.38939 1.72742 1.38860 1.19793 0.96828 0.93743 0.98322 1.20941 0.94265 1.00084 0.95281 1.21168 0.98392 0.94999 0.99449 1.21165 0.99405 0.94046 0.99261 1.21086 0.95937 0.99785 0.97270 1.21003 0.98468 0.93954 0.99503 1.20561 0.98013 0.92599 0.98729 1.21307 0.99472 0.96774 1.01383 0.90701 0.88919 0.89376 0.92585 0.92631 0.77036 0.76813 0.92401 0.93026 0.77707 0.85739 0.86048 0.86252 0.86084 0.85955 0.89406 0.86443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.80 10.97 55.55 0.61 -19.19 16 2 C 0.08 1.84 5.14 -17.34 -0.09 1.75 16 3 Si 0.91 18.07 29.59 -169.99 -5.03 13.04 16 4 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 5 H -0.27 -5.35 7.11 56.52 0.40 -4.94 16 6 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 7 C -0.46 -11.78 9.05 -37.74 -0.34 -12.12 16 8 H 0.08 1.95 7.91 -52.49 -0.41 1.53 16 9 C 0.12 3.00 5.57 -106.83 -0.60 2.41 16 10 C -0.23 -5.44 9.80 -38.88 -0.38 -5.82 16 11 C -0.07 -1.48 9.67 -39.66 -0.38 -1.86 16 12 C -0.24 -5.06 5.27 -104.33 -0.55 -5.61 16 13 C 0.20 3.73 5.79 -5.19 -0.03 3.70 16 14 N -0.73 -11.81 5.55 -66.42 -0.37 -12.18 16 15 C 0.70 11.29 8.53 -86.92 -0.74 10.55 16 16 O -0.60 -11.69 16.01 5.29 0.08 -11.60 16 17 N -0.74 -9.30 4.98 -59.81 -0.30 -9.59 16 18 C 0.21 2.35 2.61 -69.08 -0.18 2.17 16 19 H 0.11 1.28 7.44 -51.93 -0.39 0.90 16 20 C 0.07 0.68 6.84 37.16 0.25 0.94 16 21 O -0.57 -5.37 12.06 -35.23 -0.43 -5.80 16 22 C -0.09 -0.88 4.83 -104.63 -0.50 -1.38 16 23 C -0.09 -0.86 8.06 -39.59 -0.32 -1.18 16 24 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 25 C -0.12 -0.99 10.05 -39.59 -0.40 -1.39 16 26 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 27 C -0.11 -1.01 9.67 -39.58 -0.38 -1.39 16 28 C -0.08 -1.79 9.67 -39.66 -0.38 -2.17 16 29 C -0.17 -4.25 8.70 -38.87 -0.34 -4.59 16 30 H 0.28 6.43 8.30 -40.82 -0.34 6.10 16 31 H 0.09 2.08 8.06 -52.49 -0.42 1.65 16 32 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 33 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 34 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 35 H 0.40 5.85 8.48 -40.82 -0.35 5.50 16 36 H 0.40 4.40 6.87 -40.82 -0.28 4.12 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.38 2.15 9.12 45.56 0.42 2.56 16 40 H 0.12 1.21 6.67 -52.48 -0.35 0.86 16 41 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 42 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 43 H 0.12 0.74 8.06 -52.48 -0.42 0.32 16 44 H 0.12 0.92 8.04 -52.49 -0.42 0.50 16 45 H 0.09 1.81 8.06 -52.48 -0.42 1.39 16 46 H 0.12 3.04 6.18 -52.49 -0.32 2.72 16 LS Contribution 389.59 15.07 5.87 5.87 Total: -1.00 -30.03 389.59 -11.18 -41.22 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: -5.46 Total: 17.12 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: -6.16 Total: -18.88 kcal Atomic # 7 Polarization: -40.90 SS G_CDS: -0.06 Total: -40.96 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: -0.34 Total: -17.40 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.03 Total: 13.04 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.03 -11.18 -41.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434817970.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.861 kcal (2) G-P(sol) polarization free energy of solvation -30.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds