Wall clock time and date at job start Tue Mar 31 2020 23:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86797 * 120.00226 * 2 1 4 4 H 1.48500 * 109.47048 * 274.66471 * 3 2 1 5 5 H 1.48498 * 109.47252 * 34.66428 * 3 2 1 6 6 H 1.48496 * 109.47461 * 154.66416 * 3 2 1 7 7 C 1.39951 * 119.99753 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99385 * 162.23207 * 7 2 1 9 9 C 1.41395 * 120.00207 * 342.22830 * 7 2 1 10 10 C 1.40707 * 120.24267 * 155.28681 * 9 7 2 11 11 C 1.37619 * 119.74375 * 180.02562 * 10 9 7 12 12 C 1.38639 * 120.24888 * 0.02865 * 11 10 9 13 13 C 1.50698 * 119.74967 * 179.97438 * 12 11 10 14 14 N 1.46501 * 109.47122 * 89.99659 * 13 12 11 15 15 C 1.34771 * 120.00098 * 179.97438 * 14 13 12 16 16 O 1.21588 * 119.99985 * 0.02562 * 15 14 13 17 17 N 1.34782 * 120.00237 * 180.02562 * 15 14 13 18 18 C 1.46501 * 119.99958 * 180.02562 * 17 15 14 19 19 H 1.08991 * 109.47218 * 35.00442 * 18 17 15 20 20 C 1.53004 * 109.47188 * 275.00302 * 18 17 15 21 21 O 1.42906 * 109.47002 * 295.00327 * 20 18 17 22 22 C 1.50705 * 109.46845 * 155.00486 * 18 17 15 23 23 C 1.38227 * 120.00042 * 39.72476 * 22 18 17 24 24 C 1.38235 * 119.99870 * 179.78669 * 23 22 18 25 25 C 1.38235 * 119.99967 * 0.44624 * 24 23 22 26 26 C 1.38229 * 119.99853 * 359.80800 * 25 24 23 27 27 C 1.38228 * 119.99576 * 219.99936 * 22 18 17 28 28 C 1.38635 * 120.49782 * 0.24803 * 12 11 10 29 29 C 1.37614 * 120.25107 * 359.44663 * 28 12 11 30 30 H 0.97004 * 119.99893 * 0.02562 * 1 2 3 31 31 H 1.07997 * 120.13074 * 0.02562 * 10 9 7 32 32 H 1.08000 * 119.87621 * 180.02562 * 11 10 9 33 33 H 1.08998 * 109.47087 * 209.99875 * 13 12 11 34 34 H 1.08994 * 109.47038 * 330.00134 * 13 12 11 35 35 H 0.97006 * 120.00433 * 0.02562 * 14 13 12 36 36 H 0.96998 * 119.99980 * 0.02562 * 17 15 14 37 37 H 1.08998 * 109.47315 * 55.00088 * 20 18 17 38 38 H 1.08998 * 109.47292 * 175.00118 * 20 18 17 39 39 H 0.96694 * 113.99757 * 180.02562 * 21 20 18 40 40 H 1.08008 * 120.00507 * 0.02562 * 23 22 18 41 41 H 1.08007 * 120.00185 * 180.26965 * 24 23 22 42 42 H 1.08000 * 119.99933 * 179.83031 * 25 24 23 43 43 H 1.08006 * 119.99990 * 180.02562 * 26 25 24 44 44 H 1.08000 * 120.00723 * 359.97438 * 27 22 18 45 45 H 1.08003 * 119.87291 * 179.69838 * 28 12 11 46 46 H 1.08002 * 120.12976 * 180.27263 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3911 2.1033 -1.3954 5 1 1.4925 2.6222 0.7963 6 1 3.5856 1.4137 0.5991 7 6 2.0079 -1.2120 -0.0005 8 1 3.0493 -1.2341 -0.2860 9 6 1.3515 -2.4075 0.3727 10 6 1.8217 -3.6492 -0.0930 11 6 1.1746 -4.8064 0.2762 12 6 0.0633 -4.7517 1.1032 13 6 -0.6370 -6.0257 1.5001 14 7 -0.0449 -6.5438 2.7359 15 6 -0.5149 -7.6825 3.2826 16 8 -1.4300 -8.2800 2.7498 17 7 0.0293 -8.1588 4.4199 18 6 -0.4812 -9.3969 5.0137 19 1 -0.7819 -10.0827 4.2218 20 6 -1.6885 -9.0784 5.8980 21 8 -1.2708 -8.2735 7.0025 22 6 0.5984 -10.0360 5.8487 23 6 1.4266 -9.2495 6.6273 24 6 2.4140 -9.8361 7.3966 25 6 2.5792 -11.2085 7.3801 26 6 1.7544 -11.9945 6.5974 27 6 0.7640 -11.4082 5.8315 28 6 -0.4120 -3.5333 1.5634 29 6 0.2229 -2.3640 1.2121 30 1 -0.4850 0.8401 -0.0004 31 1 2.6869 -3.6941 -0.7378 32 1 1.5339 -5.7607 -0.0797 33 1 -1.6958 -5.8233 1.6614 34 1 -0.5250 -6.7642 0.7063 35 1 0.6849 -6.0669 3.1613 36 1 0.7591 -7.6819 4.8451 37 1 -2.4333 -8.5367 5.3149 38 1 -2.1225 -10.0070 6.2688 39 1 -1.9864 -8.0331 7.6068 40 1 1.2997 -8.1770 6.6376 41 1 3.0583 -9.2220 8.0083 42 1 3.3524 -11.6665 7.9790 43 1 1.8831 -13.0668 6.5848 44 1 0.1196 -12.0224 5.2201 45 1 -1.2815 -3.5021 2.2032 46 1 -0.1465 -1.4163 1.5752 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434817970.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:20 Heat of formation + Delta-G solvation = -59.159700 kcal Electronic energy + Delta-G solvation = -27801.511312 eV Core-core repulsion = 23847.459521 eV Total energy + Delta-G solvation = -3954.051791 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.37184 -40.14180 -39.43242 -37.88337 -36.33710 -35.61558 -35.05702 -32.69476 -31.83478 -31.56076 -31.15377 -29.30203 -28.22827 -25.47725 -24.38906 -23.59751 -22.89868 -22.18379 -21.78978 -21.29714 -19.64138 -19.23809 -18.31876 -18.05347 -17.22614 -17.06801 -16.60984 -16.13729 -16.11694 -15.77043 -15.68072 -15.56364 -15.44859 -14.93210 -14.87632 -14.35770 -14.23823 -14.17168 -13.83493 -13.77979 -13.58399 -13.33509 -13.16145 -12.94715 -12.79340 -12.73197 -12.39514 -12.16276 -11.93493 -11.85199 -11.51479 -11.41021 -11.29137 -11.02866 -10.92340 -10.36080 -9.79824 -9.75685 -9.61350 -9.39597 -9.28828 -8.67142 -6.36926 0.41205 0.54952 0.82828 1.13666 1.38497 1.44573 1.53549 1.87982 2.16894 2.19810 2.70055 2.91580 3.35979 3.39567 3.62568 3.75630 3.99729 4.17713 4.18176 4.22476 4.32597 4.33439 4.44929 4.52435 4.53301 4.62544 4.67613 4.71563 4.76014 4.84163 5.04500 5.09099 5.14741 5.18484 5.35229 5.42583 5.42918 5.55067 5.59151 5.66427 5.68644 5.73528 5.88768 6.05659 6.08522 6.13840 6.20934 6.36037 6.67760 6.86075 6.91587 7.00175 7.09963 7.58728 8.29663 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017533 B = 0.001978 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.583994 B =14150.395164 C =14583.883016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.035 3.965 3 Si 0.982 3.018 4 H -0.263 1.263 5 H -0.266 1.266 6 H -0.258 1.258 7 C -0.496 4.496 8 H 0.077 0.923 9 C 0.086 3.914 10 C -0.243 4.243 11 C -0.067 4.067 12 C -0.226 4.226 13 C 0.214 3.786 14 N -0.729 5.729 15 C 0.701 3.299 16 O -0.636 6.636 17 N -0.725 5.725 18 C 0.206 3.794 19 H 0.097 0.903 20 C 0.074 3.926 21 O -0.574 6.574 22 C -0.097 4.097 23 C -0.099 4.099 24 C -0.131 4.131 25 C -0.124 4.124 26 C -0.126 4.126 27 C -0.120 4.120 28 C -0.081 4.081 29 C -0.192 4.192 30 H 0.289 0.711 31 H 0.098 0.902 32 H 0.115 0.885 33 H 0.052 0.948 34 H 0.057 0.943 35 H 0.404 0.596 36 H 0.405 0.595 37 H 0.038 0.962 38 H 0.071 0.929 39 H 0.393 0.607 40 H 0.121 0.879 41 H 0.136 0.864 42 H 0.142 0.858 43 H 0.143 0.857 44 H 0.134 0.866 45 H 0.103 0.897 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.569 -17.943 16.076 24.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.181 4.181 3 Si 0.802 3.198 4 H -0.188 1.188 5 H -0.191 1.191 6 H -0.181 1.181 7 C -0.525 4.525 8 H 0.095 0.905 9 C 0.084 3.916 10 C -0.263 4.263 11 C -0.086 4.086 12 C -0.227 4.227 13 C 0.091 3.909 14 N -0.383 5.383 15 C 0.401 3.599 16 O -0.518 6.518 17 N -0.381 5.381 18 C 0.101 3.899 19 H 0.114 0.886 20 C -0.005 4.005 21 O -0.382 6.382 22 C -0.098 4.098 23 C -0.118 4.118 24 C -0.149 4.149 25 C -0.142 4.142 26 C -0.144 4.144 27 C -0.139 4.139 28 C -0.100 4.100 29 C -0.212 4.212 30 H 0.100 0.900 31 H 0.117 0.883 32 H 0.133 0.867 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.239 0.761 36 H 0.242 0.758 37 H 0.056 0.944 38 H 0.089 0.911 39 H 0.242 0.758 40 H 0.139 0.861 41 H 0.154 0.846 42 H 0.159 0.841 43 H 0.161 0.839 44 H 0.152 0.848 45 H 0.122 0.878 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.089 -18.394 15.267 23.929 hybrid contribution 0.113 1.525 0.274 1.554 sum 1.202 -16.869 15.541 22.968 Atomic orbital electron populations 1.69874 1.09046 1.30701 1.35031 1.26787 0.95486 1.04625 0.91174 0.85200 0.79248 0.75963 0.79375 1.18793 1.19055 1.18147 1.19891 0.98431 0.92500 1.41683 0.90466 1.18006 0.91675 0.93113 0.88836 1.21157 1.04592 0.93045 1.07496 1.20684 0.94560 0.96927 0.96401 1.19191 1.01680 0.93082 1.08795 1.19554 0.95139 0.91675 0.84563 1.45410 1.39945 1.24966 1.27983 1.16130 0.81897 0.81108 0.80773 1.90855 1.33665 1.61741 1.65570 1.45078 1.40169 1.27506 1.25351 1.19769 0.91749 0.85055 0.93350 0.88551 1.22471 0.95077 0.95027 0.87908 1.86434 1.40092 1.72718 1.38928 1.19723 0.96944 0.94293 0.98793 1.20995 0.94881 1.00008 0.95898 1.21417 0.98306 0.95722 0.99408 1.21499 0.99683 0.93876 0.99094 1.21402 0.95325 1.01056 0.96621 1.21228 0.99040 0.93709 0.99904 1.20748 0.98200 0.92399 0.98644 1.21260 1.00324 0.97036 1.02533 0.90020 0.88345 0.86693 0.92948 0.92420 0.76096 0.75823 0.94419 0.91063 0.75795 0.86098 0.84592 0.84055 0.83897 0.84840 0.87847 0.88163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.35 10.97 21.83 0.24 -42.11 16 2 C 0.03 1.72 5.14 85.26 0.44 2.16 16 3 Si 0.98 37.39 29.59 68.60 2.03 39.42 16 4 H -0.26 -9.67 7.11 99.48 0.71 -8.97 16 5 H -0.27 -9.66 7.11 99.48 0.71 -8.95 16 6 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 7 C -0.50 -26.22 9.05 23.46 0.21 -26.01 16 8 H 0.08 3.93 7.91 -2.91 -0.02 3.91 16 9 C 0.09 4.55 5.57 -21.29 -0.12 4.43 16 10 C -0.24 -11.57 9.80 22.73 0.22 -11.35 16 11 C -0.07 -2.80 9.67 22.22 0.21 -2.59 16 12 C -0.23 -9.14 5.27 -19.67 -0.10 -9.24 16 13 C 0.21 7.57 5.79 85.63 0.50 8.06 16 14 N -0.73 -22.51 5.55 -482.31 -2.68 -25.19 16 15 C 0.70 21.96 8.53 179.05 1.53 23.49 16 16 O -0.64 -24.28 16.01 -3.99 -0.06 -24.34 16 17 N -0.73 -17.57 4.98 -461.40 -2.30 -19.86 16 18 C 0.21 4.45 2.61 44.25 0.12 4.57 16 19 H 0.10 2.28 7.44 -2.39 -0.02 2.26 16 20 C 0.07 1.44 6.84 71.98 0.49 1.93 16 21 O -0.57 -10.17 12.06 -148.98 -1.80 -11.97 16 22 C -0.10 -1.85 4.83 -19.87 -0.10 -1.94 16 23 C -0.10 -1.83 8.06 22.27 0.18 -1.65 16 24 C -0.13 -2.06 10.05 22.27 0.22 -1.83 16 25 C -0.12 -1.72 10.05 22.27 0.22 -1.49 16 26 C -0.13 -1.78 10.05 22.27 0.22 -1.55 16 27 C -0.12 -1.99 9.67 22.27 0.22 -1.77 16 28 C -0.08 -3.61 9.67 22.22 0.21 -3.40 16 29 C -0.19 -9.84 8.70 22.73 0.20 -9.65 16 30 H 0.29 13.45 8.30 -92.71 -0.77 12.68 16 31 H 0.10 4.44 8.06 -2.91 -0.02 4.42 16 32 H 0.12 4.17 8.06 -2.91 -0.02 4.14 16 33 H 0.05 1.92 8.08 -2.39 -0.02 1.90 16 34 H 0.06 2.05 8.08 -2.39 -0.02 2.03 16 35 H 0.40 11.32 8.48 -92.70 -0.79 10.53 16 36 H 0.41 8.54 6.87 -92.71 -0.64 7.90 16 37 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.39 3.91 9.12 -74.06 -0.68 3.24 16 40 H 0.12 2.22 6.67 -2.91 -0.02 2.21 16 41 H 0.14 1.65 8.06 -2.91 -0.02 1.62 16 42 H 0.14 1.28 8.06 -2.91 -0.02 1.26 16 43 H 0.14 1.32 8.06 -2.91 -0.02 1.30 16 44 H 0.13 1.80 8.04 -2.91 -0.02 1.78 16 45 H 0.10 4.21 8.06 -2.91 -0.02 4.19 16 46 H 0.10 5.41 6.18 -2.91 -0.02 5.40 16 Total: -1.00 -65.29 389.59 -0.75 -66.04 By element: Atomic # 1 Polarization: 46.92 SS G_CDS: -1.07 Total: 45.86 kcal Atomic # 6 Polarization: -32.73 SS G_CDS: 4.88 Total: -27.85 kcal Atomic # 7 Polarization: -82.43 SS G_CDS: -4.74 Total: -87.16 kcal Atomic # 8 Polarization: -34.45 SS G_CDS: -1.86 Total: -36.31 kcal Atomic # 14 Polarization: 37.39 SS G_CDS: 2.03 Total: 39.42 kcal Total: -65.29 -0.75 -66.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434817970.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.882 kcal (2) G-P(sol) polarization free energy of solvation -65.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds