Wall clock time and date at job start Tue Mar 31 2020 23:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86799 * 119.99532 * 2 1 4 4 H 1.48501 * 109.46918 * 239.99809 * 3 2 1 5 5 H 1.48495 * 109.47617 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47184 * 120.00171 * 3 2 1 7 7 C 1.39939 * 120.00218 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00275 * 197.84111 * 7 2 1 9 9 C 1.41404 * 119.99883 * 17.84582 * 7 2 1 10 10 C 1.40708 * 120.24233 * 204.38091 * 9 7 2 11 11 C 1.37618 * 119.74423 * 180.02562 * 10 9 7 12 12 C 1.38637 * 120.25077 * 0.02805 * 11 10 9 13 13 C 1.50696 * 119.75103 * 179.97438 * 12 11 10 14 14 N 1.46497 * 109.46859 * 89.99795 * 13 12 11 15 15 C 1.34780 * 119.99612 * 179.97438 * 14 13 12 16 16 O 1.21583 * 120.00132 * 0.02562 * 15 14 13 17 17 N 1.34781 * 119.99850 * 179.97438 * 15 14 13 18 18 C 1.46500 * 120.00147 * 180.02562 * 17 15 14 19 19 C 1.52999 * 109.47225 * 180.02562 * 18 17 15 20 20 H 1.09003 * 109.46817 * 305.00028 * 19 18 17 21 21 O 1.42900 * 109.46825 * 65.00307 * 19 18 17 22 22 C 1.50704 * 109.46979 * 185.00092 * 19 18 17 23 23 C 1.38226 * 120.00089 * 279.72793 * 22 19 18 24 24 C 1.38234 * 120.00391 * 179.78781 * 23 22 19 25 25 C 1.38237 * 119.99446 * 0.44724 * 24 23 22 26 26 C 1.38240 * 120.00203 * 359.80220 * 25 24 23 27 27 C 1.38233 * 119.99708 * 359.97438 * 26 25 24 28 28 C 1.38637 * 120.49528 * 0.24846 * 12 11 10 29 29 C 1.37617 * 120.25075 * 359.44619 * 28 12 11 30 30 H 0.96998 * 120.00255 * 359.97438 * 1 2 3 31 31 H 1.08006 * 120.13089 * 0.02562 * 10 9 7 32 32 H 1.08003 * 119.87674 * 180.02562 * 11 10 9 33 33 H 1.08994 * 109.47045 * 329.99659 * 13 12 11 34 34 H 1.08998 * 109.46688 * 209.99946 * 13 12 11 35 35 H 0.96996 * 120.00638 * 0.02562 * 14 13 12 36 36 H 0.96998 * 119.99667 * 0.02562 * 17 15 14 37 37 H 1.08999 * 109.46773 * 60.00357 * 18 17 15 38 38 H 1.09002 * 109.47138 * 300.00458 * 18 17 15 39 39 H 0.96698 * 114.00273 * 59.99962 * 21 19 18 40 40 H 1.08011 * 120.00043 * 359.97438 * 23 22 19 41 41 H 1.08001 * 120.00593 * 180.27029 * 24 23 22 42 42 H 1.08001 * 119.99801 * 179.83343 * 25 24 23 43 43 H 1.07996 * 120.00020 * 180.02562 * 26 25 24 44 44 H 1.08004 * 120.00034 * 179.97438 * 27 26 25 45 45 H 1.08000 * 119.87384 * 179.70709 * 28 12 11 46 46 H 1.08001 * 120.13054 * 180.27289 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 3.0959 1.6965 -1.2125 5 1 1.2772 2.7465 -0.0006 6 1 3.0959 1.6965 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0490 -1.2343 0.2871 9 6 1.3520 -2.4072 -0.3742 10 6 1.8259 -3.6497 0.0855 11 6 1.1799 -4.8067 -0.2860 12 6 0.0667 -4.7512 -1.1104 13 6 -0.6317 -6.0252 -1.5107 14 7 -1.6746 -6.3389 -0.5309 15 6 -2.4347 -7.4412 -0.6854 16 8 -2.2544 -8.1754 -1.6376 17 7 -3.3939 -7.7301 0.2163 18 6 -4.2197 -8.9285 0.0488 19 6 -5.2236 -9.0211 1.1997 20 1 -4.6906 -8.9899 2.1500 21 8 -6.1337 -7.9218 1.1274 22 6 -5.9893 -10.3149 1.0954 23 6 -7.0494 -10.4216 0.2148 24 6 -7.7491 -11.6097 0.1160 25 6 -7.3943 -12.6883 0.9045 26 6 -6.3373 -12.5800 1.7889 27 6 -5.6348 -11.3933 1.8843 28 6 -0.4055 -3.5329 -1.5739 29 6 0.2210 -2.3628 -1.2102 30 1 -0.4850 0.8400 0.0004 31 1 2.6932 -3.6954 0.7275 32 1 1.5415 -5.7616 0.0660 33 1 0.0911 -6.8402 -1.5455 34 1 -1.0836 -5.8981 -2.4944 35 1 -1.8187 -5.7530 0.2285 36 1 -3.5374 -7.1445 0.9761 37 1 -3.5818 -9.8124 0.0506 38 1 -4.7570 -8.8701 -0.8978 39 1 -6.6433 -7.8864 0.3064 40 1 -7.3293 -9.5775 -0.3982 41 1 -8.5746 -11.6945 -0.5752 42 1 -7.9426 -13.6157 0.8293 43 1 -6.0599 -13.4228 2.4046 44 1 -4.8093 -11.3085 2.5755 45 1 -1.2707 -3.5017 -2.2195 46 1 -0.1512 -1.4145 -1.5688 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434818278.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:35 Heat of formation + Delta-G solvation = -65.065426 kcal Electronic energy + Delta-G solvation = -27123.006389 eV Core-core repulsion = 23168.698507 eV Total energy + Delta-G solvation = -3954.307882 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.18629 -40.44672 -39.46801 -38.10494 -36.32938 -35.31744 -35.03540 -32.74863 -31.98023 -31.76263 -31.16477 -29.39047 -28.07161 -25.48987 -24.39818 -23.48872 -22.88994 -22.17652 -21.87515 -21.74536 -19.46596 -19.22846 -18.71859 -17.54624 -17.17508 -17.11346 -16.67699 -16.36278 -16.17197 -15.84671 -15.56545 -15.52289 -15.21938 -15.02996 -14.97225 -14.54208 -14.24567 -14.18023 -13.85302 -13.79808 -13.66464 -13.46488 -13.25178 -12.80643 -12.71896 -12.71010 -12.47622 -12.19226 -12.10173 -11.89108 -11.55940 -11.43356 -11.28311 -11.16082 -11.00811 -10.37700 -9.84132 -9.73409 -9.70631 -9.39178 -9.28278 -8.66421 -6.36426 0.34803 0.48476 0.83591 1.14561 1.38950 1.47184 1.51242 1.87638 2.17033 2.20282 2.70534 2.82333 3.34239 3.43538 3.67047 3.76506 3.85485 3.90357 4.13541 4.18707 4.19164 4.28594 4.34030 4.52931 4.55976 4.60155 4.66910 4.68474 4.82000 4.88535 5.03077 5.05362 5.13646 5.14917 5.35992 5.43483 5.43574 5.53956 5.56438 5.59950 5.61361 5.69214 5.88802 6.05590 6.08411 6.09092 6.21639 6.36627 6.64011 6.68292 6.92170 7.00801 7.11363 7.59155 8.29840 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.025088 B = 0.001643 C = 0.001602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.804244 B =17038.853644 C =17476.996232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.037 3.963 3 Si 0.981 3.019 4 H -0.262 1.262 5 H -0.268 1.268 6 H -0.259 1.259 7 C -0.497 4.497 8 H 0.077 0.923 9 C 0.085 3.915 10 C -0.243 4.243 11 C -0.067 4.067 12 C -0.227 4.227 13 C 0.213 3.787 14 N -0.729 5.729 15 C 0.698 3.302 16 O -0.640 6.640 17 N -0.732 5.732 18 C 0.118 3.882 19 C 0.152 3.848 20 H 0.121 0.879 21 O -0.561 6.561 22 C -0.128 4.128 23 C -0.120 4.120 24 C -0.128 4.128 25 C -0.126 4.126 26 C -0.128 4.128 27 C -0.119 4.119 28 C -0.082 4.082 29 C -0.191 4.191 30 H 0.289 0.711 31 H 0.098 0.902 32 H 0.116 0.884 33 H 0.058 0.942 34 H 0.053 0.947 35 H 0.404 0.596 36 H 0.411 0.589 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.387 0.613 40 H 0.135 0.865 41 H 0.140 0.860 42 H 0.141 0.859 43 H 0.141 0.859 44 H 0.136 0.864 45 H 0.104 0.896 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.153 -18.500 3.996 24.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.179 4.179 3 Si 0.801 3.199 4 H -0.186 1.186 5 H -0.192 1.192 6 H -0.183 1.183 7 C -0.526 4.526 8 H 0.095 0.905 9 C 0.083 3.917 10 C -0.263 4.263 11 C -0.086 4.086 12 C -0.229 4.229 13 C 0.090 3.910 14 N -0.384 5.384 15 C 0.398 3.602 16 O -0.523 6.523 17 N -0.388 5.388 18 C -0.007 4.007 19 C 0.093 3.907 20 H 0.139 0.861 21 O -0.368 6.368 22 C -0.129 4.129 23 C -0.138 4.138 24 C -0.146 4.146 25 C -0.144 4.144 26 C -0.146 4.146 27 C -0.137 4.137 28 C -0.100 4.100 29 C -0.211 4.211 30 H 0.100 0.900 31 H 0.116 0.884 32 H 0.134 0.866 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.240 0.760 36 H 0.247 0.753 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.237 0.763 40 H 0.152 0.848 41 H 0.158 0.842 42 H 0.159 0.841 43 H 0.159 0.841 44 H 0.153 0.847 45 H 0.122 0.878 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -14.961 -18.889 3.722 24.382 hybrid contribution 0.094 1.226 0.057 1.231 sum -14.866 -17.662 3.779 23.393 Atomic orbital electron populations 1.69855 1.08951 1.30755 1.34850 1.26744 0.95491 1.04479 0.91176 0.85271 0.78836 0.75706 0.80057 1.18613 1.19191 1.18326 1.19875 0.98456 0.92555 1.41739 0.90521 1.18010 0.91704 0.93114 0.88877 1.21158 1.04545 0.92985 1.07587 1.20684 0.94752 0.96948 0.96173 1.19206 1.01335 0.93193 1.09143 1.19579 0.87718 0.93436 0.90296 1.45439 1.37128 1.25718 1.30114 1.16165 0.79808 0.81544 0.82670 1.90863 1.74077 1.52869 1.34453 1.44894 1.36478 1.28903 1.28541 1.21871 0.92749 0.87070 0.98976 1.20902 0.87828 0.83314 0.98683 0.86119 1.86622 1.56782 1.48196 1.45226 1.20401 0.97946 0.96080 0.98469 1.21170 0.95582 0.98867 0.98221 1.21442 1.00331 0.93051 0.99760 1.21549 0.97391 0.99566 0.95871 1.21465 0.95955 0.98072 0.99142 1.21285 1.00272 0.93009 0.99165 1.20756 0.98215 0.92362 0.98714 1.21256 1.00399 0.97021 1.02413 0.90002 0.88355 0.86632 0.92330 0.92869 0.76035 0.75323 0.91475 0.91852 0.76259 0.84751 0.84181 0.84119 0.84135 0.84656 0.87815 0.88124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.65 10.95 21.82 0.24 -41.41 16 2 C 0.04 1.81 5.14 85.25 0.44 2.25 16 3 Si 0.98 37.24 29.59 68.60 2.03 39.27 16 4 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 5 H -0.27 -9.61 7.11 99.48 0.71 -8.90 16 6 H -0.26 -9.51 7.11 99.48 0.71 -8.81 16 7 C -0.50 -26.20 9.05 23.46 0.21 -25.99 16 8 H 0.08 3.89 7.91 -2.91 -0.02 3.87 16 9 C 0.09 4.49 5.57 -21.29 -0.12 4.37 16 10 C -0.24 -11.49 9.80 22.73 0.22 -11.27 16 11 C -0.07 -2.77 9.67 22.22 0.21 -2.56 16 12 C -0.23 -9.13 5.27 -19.67 -0.10 -9.24 16 13 C 0.21 7.48 5.79 85.63 0.50 7.98 16 14 N -0.73 -22.63 5.55 -482.31 -2.68 -25.31 16 15 C 0.70 21.88 8.57 179.05 1.53 23.42 16 16 O -0.64 -25.08 16.34 -3.98 -0.06 -25.14 16 17 N -0.73 -16.62 5.51 -478.53 -2.64 -19.26 16 18 C 0.12 2.30 5.29 86.38 0.46 2.75 16 19 C 0.15 2.26 3.24 29.85 0.10 2.36 16 20 H 0.12 1.63 8.00 -2.39 -0.02 1.61 16 21 O -0.56 -8.84 13.13 -148.98 -1.96 -10.80 16 22 C -0.13 -1.89 4.97 -19.87 -0.10 -1.99 16 23 C -0.12 -1.63 9.32 22.27 0.21 -1.42 16 24 C -0.13 -1.58 10.05 22.27 0.22 -1.35 16 25 C -0.13 -1.49 10.05 22.27 0.22 -1.26 16 26 C -0.13 -1.59 10.05 22.27 0.22 -1.37 16 27 C -0.12 -1.66 9.67 22.27 0.22 -1.44 16 28 C -0.08 -3.62 9.67 22.22 0.21 -3.40 16 29 C -0.19 -9.76 8.70 22.73 0.20 -9.56 16 30 H 0.29 13.32 8.30 -92.71 -0.77 12.55 16 31 H 0.10 4.41 8.06 -2.91 -0.02 4.39 16 32 H 0.12 4.13 8.06 -2.91 -0.02 4.11 16 33 H 0.06 2.05 8.08 -2.39 -0.02 2.03 16 34 H 0.05 1.92 8.08 -2.39 -0.02 1.90 16 35 H 0.40 11.53 8.48 -92.71 -0.79 10.75 16 36 H 0.41 7.72 8.49 -92.71 -0.79 6.93 16 37 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.39 4.09 7.50 -74.06 -0.56 3.53 16 40 H 0.13 1.31 6.78 -2.90 -0.02 1.29 16 41 H 0.14 1.15 8.06 -2.91 -0.02 1.13 16 42 H 0.14 1.03 8.06 -2.91 -0.02 1.01 16 43 H 0.14 1.15 8.06 -2.91 -0.02 1.13 16 44 H 0.14 1.47 8.04 -2.91 -0.02 1.44 16 45 H 0.10 4.20 8.06 -2.91 -0.02 4.17 16 46 H 0.10 5.41 6.16 -2.91 -0.02 5.39 16 Total: -1.00 -65.90 392.69 -1.31 -67.21 By element: Atomic # 1 Polarization: 44.26 SS G_CDS: -1.10 Total: 43.16 kcal Atomic # 6 Polarization: -32.58 SS G_CDS: 4.86 Total: -27.73 kcal Atomic # 7 Polarization: -80.90 SS G_CDS: -5.07 Total: -85.98 kcal Atomic # 8 Polarization: -33.92 SS G_CDS: -2.02 Total: -35.94 kcal Atomic # 14 Polarization: 37.24 SS G_CDS: 2.03 Total: 39.27 kcal Total: -65.90 -1.31 -67.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434818278.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.144 kcal (2) G-P(sol) polarization free energy of solvation -65.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds