Wall clock time and date at job start Tue Mar 31 2020 23:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 120.00025 * 2 1 4 4 H 1.48495 * 109.47037 * 264.58955 * 3 2 1 5 5 H 1.48501 * 109.47045 * 24.58893 * 3 2 1 6 6 H 1.48499 * 109.47325 * 144.58933 * 3 2 1 7 7 C 1.37879 * 119.99928 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00090 * 4.98706 * 7 2 1 9 9 C 1.50700 * 119.99921 * 184.99229 * 7 2 1 10 10 H 1.09000 * 109.47170 * 25.42457 * 9 7 2 11 11 C 1.50694 * 109.47214 * 145.42782 * 9 7 2 12 12 O 1.21283 * 120.00233 * 119.99921 * 11 9 7 13 13 N 1.34777 * 120.00180 * 299.99669 * 11 9 7 14 14 C 1.47359 * 121.54773 * 0.02562 * 13 11 9 15 15 C 1.52748 * 107.44174 * 117.61573 * 14 13 11 16 16 C 1.50746 * 111.08098 * 47.14806 * 15 14 13 17 17 C 1.31222 * 123.46673 * 339.17307 * 16 15 14 18 18 C 1.51924 * 119.97107 * 182.03419 * 17 16 15 19 19 C 1.52905 * 109.26022 * 322.67481 * 18 17 16 20 20 C 1.50847 * 108.65511 * 49.83726 * 19 18 17 21 21 O 1.21281 * 120.25197 * 147.30947 * 20 19 18 22 22 N 1.34306 * 119.50105 * 327.33524 * 20 19 18 23 23 C 1.46599 * 121.55290 * 179.97438 * 13 11 9 24 24 C 1.50702 * 109.46673 * 265.42619 * 9 7 2 25 25 C 1.38229 * 120.00356 * 305.09150 * 24 9 7 26 26 C 1.38232 * 120.00284 * 179.79231 * 25 24 9 27 27 C 1.38235 * 120.00076 * 0.43762 * 26 25 24 28 28 C 1.38239 * 119.99746 * 359.81713 * 27 26 25 29 29 C 1.38228 * 119.99932 * 359.97160 * 28 27 26 30 30 H 0.97008 * 120.00337 * 0.02562 * 1 2 3 31 31 H 1.08994 * 109.86383 * 237.10427 * 14 13 11 32 32 H 1.08996 * 109.86439 * 358.07132 * 14 13 11 33 33 H 1.08995 * 109.15389 * 286.73562 * 15 14 13 34 34 H 1.09000 * 109.15392 * 167.56121 * 15 14 13 35 35 H 1.09003 * 109.72884 * 202.65211 * 18 17 16 36 36 H 1.08998 * 109.43989 * 82.52417 * 18 17 16 37 37 H 1.08998 * 109.63878 * 290.03925 * 19 18 17 38 38 H 1.09003 * 109.63507 * 169.63377 * 19 18 17 39 39 H 0.97000 * 119.30985 * 176.45546 * 22 20 19 40 40 H 1.09004 * 109.36627 * 103.03635 * 23 13 11 41 41 H 1.09000 * 109.37272 * 343.40163 * 23 13 11 42 42 H 1.08005 * 119.99682 * 0.02562 * 25 24 9 43 43 H 1.08007 * 120.00237 * 180.27588 * 26 25 24 44 44 H 1.07999 * 120.00183 * 179.83842 * 27 26 25 45 45 H 1.07995 * 119.99942 * 180.02562 * 28 27 26 46 46 H 1.08007 * 120.00079 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6109 1.9803 -1.3938 5 1 1.3940 2.6829 0.5826 6 1 3.4848 1.4759 0.8112 7 6 2.0045 -1.1941 0.0005 8 1 1.4676 -2.1276 -0.0804 9 6 3.5072 -1.1965 0.1141 10 1 3.8347 -0.2888 0.6210 11 6 3.9493 -2.4008 0.9047 12 8 4.6854 -3.2214 0.3991 13 7 3.5267 -2.5660 2.1738 14 6 2.6317 -1.5909 2.8216 15 6 1.3312 -2.3172 3.1597 16 6 1.6068 -3.6407 3.8266 17 6 2.7516 -4.2749 3.7304 18 6 2.9279 -5.6281 4.3981 19 6 2.1879 -5.6306 5.7361 20 6 0.7842 -5.1258 5.5121 21 8 -0.1325 -5.5517 6.1823 22 7 0.5571 -4.2015 4.5646 23 6 3.9350 -3.7248 2.9736 24 6 4.1149 -1.2495 -1.2639 25 6 3.7597 -2.2600 -2.1376 26 6 4.3139 -2.3062 -3.4032 27 6 5.2302 -1.3470 -3.7918 28 6 5.5895 -0.3394 -2.9162 29 6 5.0320 -0.2908 -1.6523 30 1 -0.4851 0.8401 -0.0004 31 1 3.0933 -1.2137 3.7341 32 1 2.4291 -0.7646 2.1403 33 1 0.7687 -2.4893 2.2420 34 1 0.7382 -1.6953 3.8303 35 1 3.9875 -5.8190 4.5686 36 1 2.5177 -6.4064 3.7546 37 1 2.7035 -4.9785 6.4411 38 1 2.1532 -6.6450 6.1336 39 1 -0.3531 -3.9168 4.3874 40 1 4.7071 -3.4218 3.6810 41 1 4.3334 -4.4965 2.3149 42 1 3.0462 -3.0114 -1.8328 43 1 4.0329 -3.0932 -4.0874 44 1 5.6652 -1.3845 -4.7796 45 1 6.3051 0.4103 -3.2200 46 1 5.3124 0.4967 -0.9683 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001453314014.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:11 Heat of formation + Delta-G solvation = -32.450088 kcal Electronic energy + Delta-G solvation = -30166.312307 eV Core-core repulsion = 26213.418732 eV Total energy + Delta-G solvation = -3952.893575 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.78200 -39.59097 -38.30229 -37.24012 -35.12817 -33.98027 -33.48249 -31.61685 -30.79078 -30.17261 -29.99766 -27.83499 -25.24305 -24.49908 -23.39200 -23.28358 -21.90483 -21.31073 -20.48216 -18.51645 -17.95187 -17.27077 -16.95266 -16.51759 -16.12268 -15.93700 -15.70664 -15.08519 -14.79286 -14.51821 -14.27874 -13.95264 -13.87889 -13.59808 -13.27338 -13.22100 -12.85975 -12.73515 -12.67653 -12.61410 -12.25167 -12.11461 -11.97525 -11.81893 -11.40168 -11.31729 -11.18145 -11.02510 -10.86004 -10.52145 -10.36943 -10.28460 -10.00477 -9.89700 -9.59813 -9.07938 -8.73705 -8.20647 -8.15862 -7.92200 -7.85401 -6.41692 -4.43048 1.77966 2.11508 2.17974 2.83236 3.05184 3.12247 3.14699 3.20973 3.43371 3.65051 4.11056 4.33715 4.57349 4.58642 4.82028 4.89776 5.06465 5.18411 5.33878 5.37306 5.51904 5.56322 5.57714 5.63334 5.63741 5.71220 5.79033 5.82904 5.89649 5.91704 6.02138 6.05858 6.22087 6.26955 6.38820 6.41411 6.50009 6.54514 6.68667 6.81237 6.85959 7.06870 7.14326 7.17993 7.22216 7.33886 7.53673 7.75599 8.00038 8.03536 8.14855 8.58349 8.97880 9.14781 10.68320 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014391 B = 0.003857 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.209669 B = 7257.036392 C = 8420.626222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.087 3.913 3 Si 0.857 3.143 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.261 1.261 7 C -0.505 4.505 8 H 0.084 0.916 9 C 0.019 3.981 10 H 0.073 0.927 11 C 0.542 3.458 12 O -0.558 6.558 13 N -0.610 5.610 14 C 0.117 3.883 15 C -0.098 4.098 16 C 0.127 3.873 17 C -0.202 4.202 18 C -0.072 4.072 19 C -0.138 4.138 20 C 0.519 3.481 21 O -0.542 6.542 22 N -0.666 5.666 23 C 0.169 3.831 24 C -0.028 4.028 25 C -0.072 4.072 26 C -0.129 4.129 27 C -0.143 4.143 28 C -0.128 4.128 29 C -0.137 4.137 30 H 0.270 0.730 31 H 0.056 0.944 32 H 0.125 0.875 33 H 0.107 0.893 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.100 0.900 38 H 0.103 0.897 39 H 0.408 0.592 40 H 0.066 0.934 41 H 0.094 0.906 42 H 0.117 0.883 43 H 0.111 0.889 44 H 0.109 0.891 45 H 0.109 0.891 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.688 -3.285 6.039 9.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.118 4.118 3 Si 0.683 3.317 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.186 1.186 7 C -0.543 4.543 8 H 0.102 0.898 9 C -0.003 4.003 10 H 0.090 0.910 11 C 0.333 3.667 12 O -0.437 6.437 13 N -0.344 5.344 14 C -0.006 4.006 15 C -0.136 4.136 16 C 0.032 3.968 17 C -0.207 4.207 18 C -0.110 4.110 19 C -0.178 4.178 20 C 0.308 3.692 21 O -0.419 6.419 22 N -0.310 5.310 23 C 0.046 3.954 24 C -0.029 4.029 25 C -0.090 4.090 26 C -0.147 4.147 27 C -0.161 4.161 28 C -0.147 4.147 29 C -0.155 4.155 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.143 0.857 33 H 0.125 0.875 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.244 0.756 40 H 0.084 0.916 41 H 0.112 0.888 42 H 0.135 0.865 43 H 0.129 0.871 44 H 0.127 0.873 45 H 0.127 0.873 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 6.556 -3.908 6.188 9.826 hybrid contribution -0.206 1.145 -0.141 1.172 sum 6.350 -2.762 6.048 9.194 Atomic orbital electron populations 1.69838 1.05984 1.27576 1.47909 1.24922 0.94700 0.98431 0.93793 0.87172 0.80280 0.84149 0.80070 1.19025 1.20969 1.18589 1.20484 0.86138 0.95324 1.52314 0.89813 1.18603 0.98412 0.93825 0.89442 0.90960 1.21110 0.77667 0.87956 0.79920 1.90597 1.37596 1.46196 1.69273 1.47910 1.49723 1.23530 1.13189 1.21844 0.87623 0.93087 0.98030 1.20907 1.00073 0.91050 1.01571 1.19385 0.87560 0.95239 0.94569 1.21329 0.96303 0.97316 1.05761 1.20546 1.01397 0.94886 0.94179 1.21782 0.92466 1.03793 0.99777 1.20768 0.91846 0.77963 0.78637 1.90751 1.46574 1.57845 1.46769 1.43846 1.10506 1.40623 1.35991 1.19969 0.92850 0.89272 0.93348 1.20042 0.92498 0.93348 0.97015 1.20830 0.98010 0.97624 0.92552 1.21037 0.98130 0.98937 0.96613 1.20868 0.99796 0.96334 0.99074 1.20883 1.00669 0.98725 0.94383 1.20971 0.98187 0.99737 0.96605 0.91989 0.92570 0.85676 0.87480 0.90131 0.89613 0.90579 0.88129 0.87862 0.75555 0.91615 0.88793 0.86542 0.87137 0.87332 0.87270 0.87436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.38 13.96 55.43 0.77 -21.60 16 2 C 0.09 2.06 4.90 -17.82 -0.09 1.97 16 3 Si 0.86 18.30 26.86 -169.99 -4.57 13.73 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 6 H -0.26 -5.14 6.06 56.52 0.34 -4.79 16 7 C -0.51 -11.60 5.99 -34.44 -0.21 -11.81 16 8 H 0.08 2.16 8.06 -52.49 -0.42 1.73 16 9 C 0.02 0.39 1.12 -94.08 -0.11 0.28 16 10 H 0.07 1.49 4.59 -51.93 -0.24 1.26 16 11 C 0.54 11.03 7.00 -10.99 -0.08 10.95 16 12 O -0.56 -12.51 14.93 5.55 0.08 -12.43 16 13 N -0.61 -10.44 2.95 -174.35 -0.52 -10.96 16 14 C 0.12 1.85 5.79 -3.70 -0.02 1.82 16 15 C -0.10 -1.44 5.99 -27.99 -0.17 -1.61 16 16 C 0.13 1.73 6.50 -80.59 -0.52 1.21 16 17 C -0.20 -2.62 5.78 -100.44 -0.58 -3.20 16 18 C -0.07 -0.74 5.99 -27.33 -0.16 -0.90 16 19 C -0.14 -1.39 6.19 -27.86 -0.17 -1.56 16 20 C 0.52 7.03 7.75 -11.12 -0.09 6.94 16 21 O -0.54 -9.13 17.94 5.56 0.10 -9.03 16 22 N -0.67 -8.71 5.29 -8.36 -0.04 -8.75 16 23 C 0.17 2.42 6.15 -5.06 -0.03 2.39 16 24 C -0.03 -0.59 4.07 -104.62 -0.43 -1.02 16 25 C -0.07 -1.50 8.26 -39.59 -0.33 -1.83 16 26 C -0.13 -2.35 10.05 -39.58 -0.40 -2.75 16 27 C -0.14 -2.41 10.05 -39.58 -0.40 -2.81 16 28 C -0.13 -2.24 10.05 -39.58 -0.40 -2.63 16 29 C -0.14 -2.66 9.42 -39.58 -0.37 -3.04 16 30 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.13 2.26 4.26 -51.93 -0.22 2.04 16 33 H 0.11 1.90 8.00 -51.93 -0.42 1.48 16 34 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.09 0.71 8.02 -51.93 -0.42 0.29 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.41 5.07 8.78 -40.82 -0.36 4.71 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.09 1.45 7.20 -51.93 -0.37 1.07 16 42 H 0.12 2.52 7.92 -52.48 -0.42 2.10 16 43 H 0.11 1.72 8.06 -52.48 -0.42 1.30 16 44 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 45 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 46 H 0.11 1.93 7.95 -52.48 -0.42 1.52 16 LS Contribution 369.36 15.07 5.57 5.57 Total: -1.00 -28.96 369.36 -9.42 -38.38 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: -6.28 Total: 12.68 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -4.54 Total: -7.59 kcal Atomic # 7 Polarization: -41.53 SS G_CDS: 0.21 Total: -41.31 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: 0.18 Total: -21.46 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -4.57 Total: 13.73 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -28.96 -9.42 -38.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001453314014.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.933 kcal (2) G-P(sol) polarization free energy of solvation -28.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds