Wall clock time and date at job start Wed Apr 1 2020 00:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 120.00043 * 2 1 4 4 H 1.48500 * 109.46925 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46793 * 300.00166 * 3 2 1 6 6 H 1.48498 * 109.46814 * 60.00066 * 3 2 1 7 7 C 1.38813 * 120.00004 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99890 * 163.07876 * 7 2 1 9 9 N 1.36938 * 119.99936 * 343.08512 * 7 2 1 10 10 C 1.46931 * 120.62972 * 151.83343 * 9 7 2 11 11 C 1.53189 * 108.89061 * 126.29441 * 10 9 7 12 12 C 1.53349 * 109.15350 * 54.57922 * 11 10 9 13 13 C 1.52989 * 109.42090 * 178.67324 * 12 11 10 14 14 C 1.53000 * 109.47021 * 295.12340 * 13 12 11 15 15 N 1.46510 * 109.47161 * 179.97438 * 14 13 12 16 16 C 1.34773 * 119.99824 * 179.97438 * 15 14 13 17 17 O 1.21280 * 120.00339 * 0.02562 * 16 15 14 18 18 C 1.50709 * 119.99690 * 180.02562 * 16 15 14 19 19 C 1.53000 * 109.47026 * 180.02562 * 18 16 15 20 20 F 1.39895 * 109.47258 * 300.00475 * 19 18 16 21 21 F 1.39908 * 109.46995 * 60.00125 * 19 18 16 22 22 C 1.52996 * 109.47281 * 179.97438 * 19 18 16 23 23 F 1.39894 * 109.47380 * 180.02562 * 22 19 18 24 24 F 1.39899 * 109.46814 * 300.00381 * 22 19 18 25 25 C 1.53047 * 109.60312 * 298.71070 * 12 11 10 26 26 C 1.46927 * 120.63023 * 331.80303 * 9 7 2 27 27 H 0.96996 * 119.99787 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.58339 * 246.15009 * 10 9 7 29 29 H 1.09003 * 109.58852 * 6.43598 * 10 9 7 30 30 H 1.09001 * 109.49505 * 174.65848 * 11 10 9 31 31 H 1.08994 * 109.50061 * 294.75020 * 11 10 9 32 32 H 1.08997 * 109.42274 * 58.74421 * 12 11 10 33 33 H 1.09000 * 109.47734 * 55.12337 * 13 12 11 34 34 H 1.09008 * 109.47484 * 175.12574 * 13 12 11 35 35 H 1.08995 * 109.47125 * 299.99647 * 14 13 12 36 36 H 1.08999 * 109.47135 * 60.00564 * 14 13 12 37 37 H 0.96999 * 119.99621 * 0.02562 * 15 14 13 38 38 H 1.08995 * 109.46901 * 299.99851 * 18 16 15 39 39 H 1.08999 * 109.46682 * 60.00353 * 18 16 15 40 40 H 1.09000 * 109.46854 * 59.99781 * 22 19 18 41 41 H 1.09000 * 109.49464 * 301.42009 * 25 12 11 42 42 H 1.08999 * 109.52117 * 181.33762 * 25 12 11 43 43 H 1.09002 * 109.58255 * 353.42549 * 26 9 7 44 44 H 1.09000 * 109.58150 * 113.70283 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0552 -1.2225 -0.2717 9 7 1.3700 -2.3623 0.3461 10 6 1.8140 -3.6530 -0.1978 11 6 2.0709 -4.6185 0.9634 12 6 0.8133 -4.7005 1.8372 13 6 1.0518 -5.6888 2.9804 14 6 1.2431 -7.0946 2.4077 15 7 1.4721 -8.0409 3.5025 16 6 1.6672 -9.3472 3.2343 17 8 1.6536 -9.7393 2.0867 18 6 1.9022 -10.3207 4.3605 19 6 2.0935 -11.7265 3.7878 20 9 0.9472 -12.1013 3.0789 21 9 3.1969 -11.7334 2.9276 22 6 2.3327 -12.7148 4.9310 23 9 2.5083 -14.0001 4.4074 24 9 3.4793 -12.3396 5.6394 25 6 0.4986 -3.3187 2.4150 26 6 0.2264 -2.3400 1.2683 27 1 -0.4849 0.8400 0.0004 28 1 1.0401 -4.0610 -0.8480 29 1 2.7331 -3.5130 -0.7669 30 1 2.3090 -5.6064 0.5691 31 1 2.9059 -4.2542 1.5616 32 1 -0.0269 -5.0410 1.2321 33 1 1.9450 -5.3969 3.5328 34 1 0.1922 -5.6834 3.6507 35 1 0.3499 -7.3866 1.8555 36 1 2.1027 -7.1001 1.7376 37 1 1.4826 -7.7273 4.4204 38 1 2.7956 -10.0289 4.9125 39 1 1.0427 -10.3150 5.0309 40 1 1.4734 -12.7095 5.6016 41 1 1.3485 -2.9667 2.9997 42 1 -0.3815 -3.3832 3.0548 43 1 0.0994 -1.3342 1.6687 44 1 -0.6773 -2.6386 0.7370 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495531074.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:06:55 Heat of formation + Delta-G solvation = -231.064516 kcal Electronic energy + Delta-G solvation = -29725.035153 eV Core-core repulsion = 24790.903045 eV Total energy + Delta-G solvation = -4934.132108 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.151 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -50.32805 -49.07711 -47.95826 -47.45486 -40.00375 -38.03061 -35.56049 -33.76049 -33.26464 -31.29722 -30.03426 -29.04491 -27.82962 -25.14029 -23.40683 -22.80264 -21.97442 -21.10805 -20.56706 -19.12028 -19.03237 -18.88340 -18.29904 -17.25912 -16.96651 -16.91180 -16.70629 -15.93200 -15.68205 -14.97570 -14.85221 -14.71556 -14.65716 -14.22848 -14.16513 -14.07559 -13.86513 -13.77175 -13.50217 -13.45837 -13.40663 -12.98307 -12.84438 -12.70404 -12.50891 -12.23718 -11.63142 -11.41964 -11.36451 -11.24998 -10.91332 -10.71762 -10.50641 -10.34283 -10.16667 -10.13691 -9.86331 -9.49055 -9.41991 -9.25699 -8.46080 -6.64427 -5.77741 -3.19881 2.00227 2.19553 2.69822 2.99726 3.17790 3.34015 3.36754 3.44755 3.44937 3.47146 4.04367 4.15865 4.31554 4.50441 4.58168 4.71293 4.86027 4.99244 5.24264 5.37396 5.44417 5.56726 5.71884 5.74613 5.95938 5.98814 6.06130 6.18019 6.24787 6.36982 6.54904 6.63370 6.70474 6.82565 6.86432 7.02665 7.09353 7.38954 7.67388 7.80637 7.81076 8.46964 9.23285 9.86995 10.44090 11.30742 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.036905 B = 0.001726 C = 0.001724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.526233 B =16220.971052 C =16240.671951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.000 4.000 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.249 4.249 8 H 0.065 0.935 9 N -0.593 5.593 10 C 0.144 3.856 11 C -0.130 4.130 12 C -0.075 4.075 13 C -0.125 4.125 14 C 0.116 3.884 15 N -0.723 5.723 16 C 0.513 3.487 17 O -0.519 6.519 18 C -0.195 4.195 19 C 0.271 3.729 20 F -0.167 7.167 21 F -0.169 7.169 22 C 0.236 3.764 23 F -0.181 7.181 24 F -0.180 7.180 25 C -0.134 4.134 26 C 0.170 3.830 27 H 0.252 0.748 28 H 0.016 0.984 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.401 0.599 38 H 0.135 0.865 39 H 0.132 0.868 40 H 0.145 0.855 41 H 0.054 0.946 42 H 0.047 0.953 43 H 0.086 0.914 44 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.568 -23.995 16.115 28.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.198 4.198 3 Si 0.731 3.269 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.379 4.379 8 H 0.083 0.917 9 N -0.316 5.316 10 C 0.017 3.983 11 C -0.169 4.169 12 C -0.094 4.094 13 C -0.163 4.163 14 C -0.007 4.007 15 N -0.375 5.375 16 C 0.297 3.703 17 O -0.394 6.394 18 C -0.235 4.235 19 C 0.233 3.767 20 F -0.147 7.147 21 F -0.149 7.149 22 C 0.181 3.819 23 F -0.162 7.162 24 F -0.161 7.161 25 C -0.173 4.173 26 C 0.044 3.956 27 H 0.063 0.937 28 H 0.034 0.966 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.235 0.765 38 H 0.153 0.847 39 H 0.150 0.850 40 H 0.162 0.838 41 H 0.072 0.928 42 H 0.066 0.934 43 H 0.104 0.896 44 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 1.492 -24.148 15.193 28.569 hybrid contribution 0.481 0.925 0.373 1.108 sum 1.973 -23.222 15.567 28.026 Atomic orbital electron populations 1.70044 1.05247 1.25303 1.54238 1.25052 0.95297 0.98403 1.01091 0.86237 0.79374 0.84022 0.77246 1.20280 1.21754 1.21608 1.19238 0.92538 0.84862 1.41280 0.91726 1.44066 1.35915 1.01528 1.50077 1.20898 0.97512 0.86974 0.92867 1.22176 0.97019 0.98926 0.98798 1.21029 0.98525 0.94819 0.95034 1.21913 1.02013 0.92952 0.99391 1.21621 1.02331 0.87771 0.88940 1.45981 1.73072 1.07185 1.11259 1.19825 0.77682 0.83180 0.89627 1.90841 1.49224 1.77856 1.21454 1.22831 1.08412 0.91784 1.00487 1.21546 0.75029 0.94906 0.85239 1.93137 1.49231 1.92381 1.79996 1.93151 1.52548 1.97193 1.72032 1.22843 0.88885 0.79202 0.90970 1.93089 1.96201 1.39257 1.87656 1.93073 1.53241 1.91060 1.78769 1.22213 0.99884 0.95338 0.99853 1.20764 0.88641 0.98151 0.88033 0.93746 0.96571 0.92983 0.93043 0.92425 0.91656 0.91492 0.91712 0.91228 0.90697 0.76458 0.84733 0.84986 0.83806 0.92750 0.93448 0.89593 0.96529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.25 11.20 55.49 0.62 -25.62 16 2 C 0.00 0.00 4.92 -17.43 -0.09 -0.09 16 3 Si 0.90 21.67 29.59 -169.99 -5.03 16.64 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 7 C -0.25 -6.86 9.58 -15.06 -0.14 -7.01 16 8 H 0.07 1.76 7.89 -52.48 -0.41 1.34 16 9 N -0.59 -14.82 2.99 -172.32 -0.52 -15.33 16 10 C 0.14 3.02 6.50 -3.71 -0.02 3.00 16 11 C -0.13 -2.17 5.16 -26.45 -0.14 -2.31 16 12 C -0.07 -1.14 2.15 -90.42 -0.19 -1.34 16 13 C -0.12 -1.38 4.80 -26.74 -0.13 -1.51 16 14 C 0.12 1.28 5.43 -4.04 -0.02 1.26 16 15 N -0.72 -6.06 5.56 -60.29 -0.33 -6.39 16 16 C 0.51 5.10 7.60 -10.98 -0.08 5.02 16 17 O -0.52 -7.80 14.83 5.56 0.08 -7.72 16 18 C -0.19 -1.01 5.18 -27.88 -0.14 -1.15 16 19 C 0.27 2.17 1.40 -26.73 -0.04 2.13 16 20 F -0.17 -1.71 16.12 2.25 0.04 -1.68 16 21 F -0.17 -1.99 16.10 2.25 0.04 -1.96 16 22 C 0.24 1.22 4.83 37.16 0.18 1.40 16 23 F -0.18 -1.47 17.30 2.25 0.04 -1.43 16 24 F -0.18 -1.09 16.80 2.25 0.04 -1.05 16 25 C -0.13 -2.39 5.36 -26.61 -0.14 -2.53 16 26 C 0.17 3.98 5.30 -3.71 -0.02 3.96 16 27 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 28 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 30 H 0.05 0.76 6.52 -51.93 -0.34 0.42 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.95 6.53 -51.93 -0.34 0.61 16 37 H 0.40 1.98 8.47 -40.82 -0.35 1.64 16 38 H 0.13 0.39 7.80 -51.93 -0.41 -0.01 16 39 H 0.13 0.15 8.14 -51.93 -0.42 -0.27 16 40 H 0.14 0.05 8.14 -51.93 -0.42 -0.38 16 41 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 42 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.09 2.27 6.06 -51.93 -0.31 1.95 16 44 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 369.10 15.07 5.56 5.56 Total: -1.00 -35.05 369.10 -6.80 -41.85 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: -6.35 Total: -3.70 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -0.98 Total: 0.82 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: -0.23 Total: -47.35 kcal Atomic # 8 Polarization: -7.80 SS G_CDS: 0.08 Total: -7.72 kcal Atomic # 9 Polarization: -6.26 SS G_CDS: 0.15 Total: -6.11 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.64 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.05 -6.80 -41.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495531074.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -189.211 kcal (2) G-P(sol) polarization free energy of solvation -35.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -231.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds