Wall clock time and date at job start Tue Mar 31 2020 23:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86796 * 120.00211 * 2 1 4 4 H 1.48504 * 109.47191 * 240.00092 * 3 2 1 5 5 H 1.48503 * 109.46930 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47208 * 119.99578 * 3 2 1 7 7 C 1.38799 * 119.99556 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99727 * 179.97438 * 7 2 1 9 9 S 1.76196 * 120.00280 * 359.97438 * 7 2 1 10 10 C 1.81004 * 99.99850 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.46825 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00251 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99565 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99593 * 179.97438 * 13 11 10 15 15 C 1.53003 * 109.47175 * 185.04330 * 14 13 11 16 16 H 1.08997 * 109.87604 * 303.76464 * 15 14 13 17 17 C 1.54332 * 109.87768 * 64.78116 * 15 14 13 18 18 C 1.55155 * 102.93968 * 141.76868 * 17 15 14 19 19 C 1.54904 * 101.58139 * 324.49167 * 18 17 15 20 20 N 1.47018 * 110.01488 * 182.66086 * 15 14 13 21 21 C 1.34781 * 125.64715 * 61.60441 * 20 15 14 22 22 O 1.21286 * 119.99525 * 5.04387 * 21 20 15 23 23 C 1.50698 * 120.00204 * 185.03925 * 21 20 15 24 24 C 1.52999 * 109.47010 * 180.02562 * 23 21 20 25 25 C 1.53777 * 113.61461 * 274.13599 * 24 23 21 26 26 C 1.53962 * 87.01964 * 220.04970 * 25 24 23 27 27 C 1.53782 * 113.61169 * 176.52662 * 24 23 21 28 28 H 0.96997 * 119.99707 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.46731 * 60.00260 * 10 9 7 30 30 H 1.09003 * 109.47267 * 300.00179 * 10 9 7 31 31 H 0.96999 * 120.00335 * 0.02562 * 13 11 10 32 32 H 1.09000 * 109.47592 * 65.04777 * 14 13 11 33 33 H 1.09001 * 109.47692 * 305.04250 * 14 13 11 34 34 H 1.08993 * 110.72603 * 23.40008 * 17 15 14 35 35 H 1.09005 * 110.86495 * 260.19591 * 17 15 14 36 36 H 1.09011 * 110.99838 * 206.41749 * 18 17 15 37 37 H 1.08997 * 111.00764 * 82.57362 * 18 17 15 38 38 H 1.09000 * 110.36578 * 155.85137 * 19 18 17 39 39 H 1.09000 * 110.36842 * 278.17345 * 19 18 17 40 40 H 1.09007 * 109.46833 * 300.00341 * 23 21 20 41 41 H 1.09000 * 109.47205 * 60.00171 * 23 21 20 42 42 H 1.09000 * 112.85201 * 45.33594 * 24 23 21 43 43 H 1.09003 * 113.61538 * 334.57026 * 25 24 23 44 44 H 1.09001 * 113.61623 * 105.47315 * 25 24 23 45 45 H 1.08997 * 113.53384 * 270.81015 * 26 25 24 46 46 H 1.08999 * 113.66171 * 139.92931 * 26 25 24 47 47 H 1.08996 * 113.61606 * 254.52935 * 27 24 23 48 48 H 1.08995 * 113.61287 * 25.35046 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1292 -2.7280 0.0019 10 6 2.5158 -3.8914 0.0013 11 6 1.9872 -5.3027 0.0018 12 8 0.7909 -5.5023 0.0028 13 7 2.8440 -6.3431 0.0020 14 6 2.3302 -7.7151 0.0029 15 6 3.4971 -8.6966 0.1298 16 1 4.2150 -8.5244 -0.6720 17 6 4.1865 -8.5180 1.4990 18 6 4.5372 -9.9742 1.9039 19 6 3.3252 -10.7550 1.3374 20 7 3.0007 -10.0791 0.0681 21 6 2.3562 -10.6364 -0.9762 22 8 2.2230 -10.0141 -2.0087 23 6 1.8012 -12.0327 -0.8610 24 6 1.1242 -12.4225 -2.1765 25 6 -0.3411 -11.9664 -2.2740 26 6 -0.6358 -13.3244 -2.9369 27 6 0.5962 -13.8668 -2.1932 28 1 -0.4849 0.8400 -0.0004 29 1 3.1250 -3.7310 0.8908 30 1 3.1238 -3.7318 -0.8892 31 1 3.8008 -6.1836 0.0022 32 1 1.7964 -7.9039 -0.9285 33 1 1.6505 -7.8480 0.8446 34 1 3.5021 -8.0714 2.2201 35 1 5.0902 -7.9161 1.4031 36 1 4.5951 -10.0751 2.9878 37 1 5.4654 -10.2979 1.4329 38 1 3.5957 -11.7950 1.1550 39 1 2.4814 -10.6966 2.0249 40 1 2.6122 -12.7297 -0.6496 41 1 1.0715 -12.0681 -0.0520 42 1 1.7207 -12.1656 -3.0519 43 1 -0.8243 -11.8394 -1.3052 44 1 -0.4900 -11.1143 -2.9373 45 1 -0.5217 -13.3134 -4.0208 46 1 -1.5743 -13.7746 -2.6135 47 1 1.2029 -14.5466 -2.7913 48 1 0.3711 -14.2608 -1.2022 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497028594.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:58:54 Heat of formation + Delta-G solvation = -62.005265 kcal Electronic energy + Delta-G solvation = -26843.019250 eV Core-core repulsion = 23024.288018 eV Total energy + Delta-G solvation = -3818.731232 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.75287 -39.32983 -38.73104 -37.48550 -34.55644 -32.40575 -32.27877 -31.04316 -30.18509 -28.66619 -25.87569 -25.64202 -25.29592 -24.27078 -22.71316 -21.33628 -20.42732 -19.65503 -19.20041 -17.82915 -17.37358 -17.04805 -16.24458 -15.97501 -15.56925 -15.35369 -15.24236 -14.79084 -14.78243 -14.62160 -14.03054 -13.92037 -13.57361 -13.49637 -13.11393 -13.02536 -12.91433 -12.72814 -12.50782 -12.28613 -12.13945 -11.83962 -11.74488 -11.71556 -11.19513 -11.16587 -11.02219 -11.01931 -10.92163 -10.75258 -10.60186 -10.47930 -9.99533 -9.80426 -9.38837 -9.04118 -8.99351 -8.82223 -8.20827 -6.47227 -6.19089 -3.89568 2.36937 2.52599 3.12535 3.15276 3.25091 3.29477 3.35541 3.79593 3.96558 4.10157 4.22761 4.27005 4.32281 4.38628 4.44910 4.58873 4.62068 4.71330 4.89442 4.97056 5.01475 5.10851 5.13652 5.15742 5.19293 5.22076 5.37572 5.39206 5.41108 5.46144 5.48442 5.60653 5.62850 5.63996 5.71657 5.76033 5.86585 5.89643 5.93656 5.97922 6.12265 6.16669 6.23566 6.63350 7.19373 7.61432 7.73447 7.92682 8.37346 8.66080 9.25836 10.88293 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016726 B = 0.002045 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.598567 B =13691.032087 C =14980.101518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.152 4.152 11 C 0.532 3.468 12 O -0.516 6.516 13 N -0.735 5.735 14 C 0.114 3.886 15 C 0.128 3.872 16 H 0.082 0.918 17 C -0.131 4.131 18 C -0.132 4.132 19 C 0.099 3.901 20 N -0.617 5.617 21 C 0.527 3.473 22 O -0.526 6.526 23 C -0.126 4.126 24 C -0.096 4.096 25 C -0.136 4.136 26 C -0.143 4.143 27 C -0.137 4.137 28 H 0.269 0.731 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.397 0.603 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.099 0.901 43 H 0.078 0.922 44 H 0.071 0.929 45 H 0.079 0.921 46 H 0.066 0.934 47 H 0.066 0.934 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.672 -30.206 2.822 31.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.303 4.303 11 C 0.318 3.682 12 O -0.390 6.390 13 N -0.390 5.390 14 C -0.011 4.011 15 C 0.024 3.976 16 H 0.100 0.900 17 C -0.169 4.169 18 C -0.170 4.170 19 C -0.024 4.024 20 N -0.353 5.353 21 C 0.317 3.683 22 O -0.401 6.401 23 C -0.165 4.165 24 C -0.115 4.115 25 C -0.173 4.173 26 C -0.180 4.180 27 C -0.175 4.175 28 H 0.079 0.921 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.230 0.770 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.102 0.898 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.110 0.890 41 H 0.112 0.888 42 H 0.117 0.883 43 H 0.097 0.903 44 H 0.090 0.910 45 H 0.098 0.902 46 H 0.085 0.915 47 H 0.085 0.915 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 7.354 -30.151 2.178 31.111 hybrid contribution 2.480 1.360 0.116 2.831 sum 9.835 -28.791 2.294 30.511 Atomic orbital electron populations 1.70013 1.05945 1.27536 1.46798 1.24998 0.95038 0.99023 0.94577 0.86220 0.79223 0.81245 0.78775 1.19946 1.20825 1.19958 1.22829 0.94874 0.91685 1.59003 0.90978 1.85419 1.04943 0.96260 1.96711 1.23523 1.06551 0.95304 1.04911 1.20296 0.86503 0.86193 0.75182 1.90708 1.15392 1.85556 1.47365 1.45836 1.09849 1.05201 1.78125 1.21542 0.95705 0.80646 1.03231 1.21700 0.95412 0.81849 0.98649 0.90031 1.22782 1.01308 0.97247 0.95584 1.22779 0.97705 0.94893 1.01667 1.22366 0.97790 0.96977 0.85263 1.48539 1.58464 1.12204 1.16110 1.20498 0.77159 0.88706 0.81984 1.90749 1.57156 1.64083 1.28147 1.21699 1.01396 0.93232 1.00209 1.22363 0.96222 0.95859 0.97039 1.22981 0.95496 0.97547 1.01274 1.22828 0.98060 0.97165 0.99983 1.22970 0.97718 0.95920 1.00855 0.92145 0.89215 0.89205 0.76965 0.90663 0.91429 0.89764 0.89585 0.89503 0.90448 0.90369 0.91008 0.88982 0.88782 0.88267 0.90320 0.90978 0.90197 0.91486 0.91498 0.90132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.50 13.22 55.49 0.73 -25.77 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.62 29.55 -169.99 -5.02 16.60 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 7 C -0.54 -15.46 9.50 30.94 0.29 -15.16 16 8 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 9 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 10 C -0.15 -3.15 6.16 36.01 0.22 -2.92 16 11 C 0.53 10.42 7.85 -10.98 -0.09 10.33 16 12 O -0.52 -12.39 15.86 5.56 0.09 -12.30 16 13 N -0.73 -10.43 5.33 -60.29 -0.32 -10.76 16 14 C 0.11 1.54 5.05 -4.04 -0.02 1.52 16 15 C 0.13 1.23 2.91 -66.95 -0.20 1.04 16 16 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 17 C -0.13 -0.88 6.11 -24.89 -0.15 -1.03 16 18 C -0.13 -0.61 7.08 -24.59 -0.17 -0.79 16 19 C 0.10 0.53 6.65 -2.53 -0.02 0.51 16 20 N -0.62 -5.51 3.07 -163.02 -0.50 -6.01 16 21 C 0.53 5.66 7.59 -10.98 -0.08 5.57 16 22 O -0.53 -7.91 14.98 5.55 0.08 -7.83 16 23 C -0.13 -0.89 4.61 -27.88 -0.13 -1.02 16 24 C -0.10 -0.78 3.11 -89.81 -0.28 -1.06 16 25 C -0.14 -1.21 7.65 -25.83 -0.20 -1.41 16 26 C -0.14 -1.02 8.09 -25.82 -0.21 -1.23 16 27 C -0.14 -0.85 7.65 -25.92 -0.20 -1.05 16 28 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 29 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 30 H 0.09 1.73 8.14 -51.91 -0.42 1.30 16 31 H 0.40 4.29 8.34 -40.82 -0.34 3.95 16 32 H 0.08 1.27 6.95 -51.93 -0.36 0.91 16 33 H 0.07 0.97 8.07 -51.93 -0.42 0.56 16 34 H 0.08 0.64 7.81 -51.93 -0.41 0.23 16 35 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.09 0.29 8.14 -51.92 -0.42 -0.13 16 37 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.08 0.27 7.51 -51.93 -0.39 -0.12 16 39 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.09 0.45 7.76 -51.93 -0.40 0.05 16 41 H 0.09 0.56 7.88 -51.93 -0.41 0.15 16 42 H 0.10 0.97 7.73 -51.93 -0.40 0.57 16 43 H 0.08 0.67 7.92 -51.93 -0.41 0.26 16 44 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 48 H 0.08 0.41 8.10 -51.93 -0.42 -0.01 16 LS Contribution 403.15 15.07 6.08 6.08 Total: -1.00 -37.33 403.15 -10.55 -47.88 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -8.16 Total: 0.68 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: -1.32 Total: -4.70 kcal Atomic # 7 Polarization: -42.44 SS G_CDS: -0.09 Total: -42.53 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: 0.17 Total: -20.13 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -37.33 -10.55 -47.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497028594.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.122 kcal (2) G-P(sol) polarization free energy of solvation -37.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds