Wall clock time and date at job start Tue Mar 31 2020 23:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86802 * 120.00254 * 2 1 4 4 H 1.48495 * 109.47088 * 270.00644 * 3 2 1 5 5 H 1.48494 * 109.47213 * 150.00041 * 3 2 1 6 6 H 1.48507 * 109.46882 * 30.00205 * 3 2 1 7 7 C 1.38800 * 119.99728 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99681 * 180.02562 * 7 2 1 9 9 S 1.76194 * 120.00217 * 359.97438 * 7 2 1 10 10 C 1.81002 * 100.00271 * 180.02562 * 9 7 2 11 11 C 1.50692 * 109.47472 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99815 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00126 * 180.02562 * 11 10 9 14 14 C 1.47423 * 125.64959 * 355.10575 * 13 11 10 15 15 C 1.54913 * 104.83169 * 155.83478 * 14 13 11 16 16 C 1.55152 * 101.58482 * 37.00883 * 15 14 13 17 17 C 1.47027 * 125.64635 * 174.79343 * 13 11 10 18 18 H 1.08999 * 109.88855 * 300.51475 * 17 13 11 19 19 C 1.53001 * 109.88118 * 61.68204 * 17 13 11 20 20 N 1.46499 * 109.47159 * 185.22889 * 19 17 13 21 21 C 1.34776 * 120.00138 * 184.99594 * 20 19 17 22 22 O 1.21279 * 120.00065 * 0.02562 * 21 20 19 23 23 C 1.50701 * 119.99941 * 180.02562 * 21 20 19 24 24 C 1.52993 * 109.47104 * 180.02562 * 23 21 20 25 25 C 1.52999 * 109.47373 * 179.97438 * 24 23 21 26 26 C 1.52997 * 117.50136 * 243.62302 * 25 24 23 27 27 C 1.52997 * 117.50153 * 174.99735 * 25 24 23 28 28 H 0.97000 * 120.00427 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47123 * 300.00215 * 10 9 7 30 30 H 1.09006 * 109.46726 * 60.00350 * 10 9 7 31 31 H 1.09005 * 110.36292 * 274.67398 * 14 13 11 32 32 H 1.08999 * 110.36770 * 36.88097 * 14 13 11 33 33 H 1.09004 * 111.00250 * 155.08274 * 15 14 13 34 34 H 1.08996 * 111.00405 * 278.93167 * 15 14 13 35 35 H 1.09007 * 110.71968 * 82.86080 * 16 15 14 36 36 H 1.08992 * 110.72478 * 205.95836 * 16 15 14 37 37 H 1.08996 * 109.47275 * 305.23002 * 19 17 13 38 38 H 1.09001 * 109.47116 * 65.23196 * 19 17 13 39 39 H 0.97006 * 119.99792 * 5.00474 * 20 19 17 40 40 H 1.08999 * 109.46998 * 299.99868 * 23 21 20 41 41 H 1.08995 * 109.47195 * 59.99826 * 23 21 20 42 42 H 1.09009 * 109.47274 * 299.99795 * 24 23 21 43 43 H 1.09003 * 109.47720 * 59.99424 * 24 23 21 44 44 H 1.09000 * 115.55105 * 29.33026 * 25 24 23 45 45 H 1.08997 * 117.49996 * 359.97438 * 26 25 24 46 46 H 1.08999 * 117.50548 * 145.01891 * 26 25 24 47 47 H 1.09003 * 117.49880 * 214.97859 * 27 25 24 48 48 H 1.09003 * 117.50157 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 3.5478 1.4401 0.7000 6 1 1.4478 2.6527 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 16 1.1292 -2.7280 -0.0005 10 6 2.5157 -3.8915 -0.0005 11 6 1.9873 -5.3027 0.0001 12 8 0.7910 -5.5023 0.0000 13 7 2.8440 -6.3431 0.0007 14 6 4.3116 -6.2477 -0.1013 15 6 4.8399 -7.5499 0.5506 16 6 3.7766 -8.5820 0.0911 17 6 2.4701 -7.7609 0.1098 18 1 1.9356 -7.9326 1.0441 19 6 1.5909 -8.1599 -1.0770 20 7 1.1215 -9.5358 -0.8962 21 6 0.4106 -10.1388 -1.8696 22 8 0.1598 -9.5424 -2.8955 23 6 -0.0728 -11.5539 -1.6833 24 6 -0.8472 -11.9962 -2.9264 25 6 -1.3375 -13.4331 -2.7376 26 6 -0.7891 -14.4976 -3.6900 27 6 -2.2368 -14.0216 -3.8265 28 1 -0.4851 -0.8400 0.0004 29 1 3.1243 -3.7314 -0.8905 30 1 3.1243 -3.7314 0.8895 31 1 4.6165 -6.1959 -1.1466 32 1 4.6737 -5.3752 0.4424 33 1 5.8265 -7.8073 0.1652 34 1 4.8569 -7.4638 1.6371 35 1 3.9966 -8.9407 -0.9145 36 1 3.7192 -9.4147 0.7920 37 1 0.7342 -7.4886 -1.1365 38 1 2.1705 -8.0918 -1.9977 39 1 1.3222 -10.0129 -0.0758 40 1 0.7823 -12.2133 -1.5348 41 1 -0.7253 -11.6032 -0.8117 42 1 -1.7024 -11.3368 -3.0755 43 1 -0.1944 -11.9469 -3.7980 44 1 -1.5330 -13.7316 -1.7077 45 1 -0.0794 -14.1741 -4.4515 46 1 -0.6236 -15.4966 -3.2869 47 1 -3.0237 -14.7076 -3.5130 48 1 -2.4796 -13.3850 -4.6773 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497045656.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:59:23 Heat of formation + Delta-G solvation = -65.697763 kcal Electronic energy + Delta-G solvation = -26484.047267 eV Core-core repulsion = 22665.155917 eV Total energy + Delta-G solvation = -3818.891351 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.44508 -39.63005 -37.87404 -37.38803 -34.91077 -32.63834 -32.53551 -31.92051 -30.48230 -28.74771 -26.34888 -24.89815 -24.47245 -22.81934 -22.71952 -21.37052 -20.84379 -20.59701 -19.12593 -18.23197 -17.20879 -17.12232 -16.61191 -16.19192 -15.78908 -15.41251 -15.14632 -14.83156 -14.59835 -14.34622 -14.09053 -13.84628 -13.68571 -13.61433 -13.24724 -13.04423 -12.74712 -12.44746 -12.42810 -12.32151 -11.95191 -11.88179 -11.84356 -11.70517 -11.54394 -11.53095 -11.23013 -11.09295 -10.91332 -10.68765 -10.25250 -10.19576 -10.00099 -9.60432 -9.57090 -9.15665 -9.01857 -8.69824 -8.22917 -6.68207 -6.62686 -4.00862 2.50574 2.56694 2.87821 3.07181 3.33622 3.38773 3.41965 3.48213 3.56073 4.14643 4.22275 4.25693 4.29274 4.43163 4.49534 4.57046 4.61598 4.80375 4.84625 4.93585 4.96475 4.99154 5.09070 5.12808 5.21962 5.27562 5.31600 5.34631 5.42665 5.44049 5.48012 5.53895 5.54530 5.62119 5.71720 5.73326 5.78373 5.80458 5.84077 5.94272 5.99275 6.02217 6.17293 6.38635 7.28747 7.49948 7.91446 8.07335 8.38963 8.49530 9.26534 10.81256 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016646 B = 0.001964 C = 0.001794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.704633 B =14251.021208 C =15606.023140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.035 3.965 3 Si 1.087 2.913 4 H -0.284 1.284 5 H -0.287 1.287 6 H -0.280 1.280 7 C -0.608 4.608 8 H 0.066 0.934 9 S -0.115 6.115 10 C -0.124 4.124 11 C 0.548 3.452 12 O -0.510 6.510 13 N -0.620 5.620 14 C 0.099 3.901 15 C -0.132 4.132 16 C -0.129 4.129 17 C 0.131 3.869 18 H 0.080 0.920 19 C 0.106 3.894 20 N -0.727 5.727 21 C 0.509 3.491 22 O -0.537 6.537 23 C -0.135 4.135 24 C -0.075 4.075 25 C -0.154 4.154 26 C -0.182 4.182 27 C -0.181 4.181 28 H 0.278 0.722 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.070 0.930 39 H 0.398 0.602 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.105 0.895 45 H 0.094 0.906 46 H 0.092 0.908 47 H 0.093 0.907 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.298 -29.044 -0.246 30.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.175 4.175 3 Si 0.913 3.087 4 H -0.210 1.210 5 H -0.213 1.213 6 H -0.205 1.205 7 C -0.756 4.756 8 H 0.084 0.916 9 S 0.111 5.889 10 C -0.275 4.275 11 C 0.336 3.664 12 O -0.383 6.383 13 N -0.358 5.358 14 C -0.024 4.024 15 C -0.170 4.170 16 C -0.167 4.167 17 C 0.026 3.974 18 H 0.098 0.902 19 C -0.019 4.019 20 N -0.380 5.380 21 C 0.296 3.704 22 O -0.413 6.413 23 C -0.175 4.175 24 C -0.113 4.113 25 C -0.173 4.173 26 C -0.219 4.219 27 C -0.218 4.218 28 H 0.091 0.909 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.088 0.912 39 H 0.232 0.768 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.094 0.906 43 H 0.090 0.910 44 H 0.123 0.877 45 H 0.112 0.888 46 H 0.110 0.890 47 H 0.112 0.888 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 6.058 -27.158 -0.998 27.844 hybrid contribution 1.957 -1.579 0.452 2.555 sum 8.015 -28.738 -0.546 29.840 Atomic orbital electron populations 1.70763 1.06714 1.31022 1.43294 1.26058 0.96325 1.02138 0.92999 0.83287 0.74400 0.73930 0.77051 1.21034 1.21302 1.20494 1.23719 0.96027 0.92125 1.63702 0.91574 1.84850 1.07997 0.98826 1.97218 1.23296 1.05104 0.93993 1.05143 1.20065 0.85749 0.85482 0.75090 1.90715 1.14905 1.84988 1.47730 1.48470 1.07165 1.04773 1.75353 1.22352 0.79924 0.99080 1.01076 1.22776 0.98739 0.94151 1.01329 1.22760 0.93529 0.97677 1.02724 1.21636 0.95724 0.81890 0.98149 0.90213 1.21792 0.99588 0.82612 0.97888 1.45889 1.56420 1.15444 1.20245 1.20741 0.77733 0.88736 0.83224 1.90743 1.56118 1.66467 1.27960 1.21643 1.01828 0.93093 1.00978 1.20928 1.00118 0.93300 0.96933 1.22353 1.04432 0.94329 0.96146 1.23055 0.97068 0.98969 1.02833 1.22969 0.93647 1.03859 1.01318 0.90942 0.88989 0.88958 0.91181 0.90008 0.89667 0.90348 0.90193 0.89966 0.89513 0.91200 0.76815 0.88843 0.88787 0.90642 0.91010 0.87726 0.88751 0.88967 0.88849 0.88653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -27.72 13.67 55.49 0.76 -26.96 16 2 C 0.04 1.03 5.49 -17.43 -0.10 0.94 16 3 Si 1.09 25.10 29.92 -169.99 -5.09 20.02 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.21 7.11 56.52 0.40 -5.80 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.61 -17.61 9.50 30.94 0.29 -17.32 16 8 H 0.07 1.83 7.80 -52.48 -0.41 1.42 16 9 S -0.12 -3.14 19.60 -107.50 -2.11 -5.24 16 10 C -0.12 -2.55 5.09 36.00 0.18 -2.37 16 11 C 0.55 10.38 7.69 -10.99 -0.08 10.30 16 12 O -0.51 -11.58 14.65 5.56 0.08 -11.50 16 13 N -0.62 -8.51 3.07 -163.02 -0.50 -9.01 16 14 C 0.10 0.98 6.74 -2.53 -0.02 0.97 16 15 C -0.13 -0.90 7.08 -24.58 -0.17 -1.07 16 16 C -0.13 -0.89 6.23 -24.90 -0.16 -1.04 16 17 C 0.13 1.43 2.95 -66.95 -0.20 1.23 16 18 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 19 C 0.11 1.36 5.08 -4.04 -0.02 1.34 16 20 N -0.73 -7.06 5.37 -60.30 -0.32 -7.39 16 21 C 0.51 5.79 7.83 -10.98 -0.09 5.70 16 22 O -0.54 -8.79 15.98 5.56 0.09 -8.70 16 23 C -0.14 -0.97 5.66 -27.89 -0.16 -1.12 16 24 C -0.08 -0.63 4.78 -26.74 -0.13 -0.75 16 25 C -0.15 -1.03 5.74 -90.62 -0.52 -1.55 16 26 C -0.18 -1.13 10.18 -26.73 -0.27 -1.40 16 27 C -0.18 -1.20 10.25 -26.73 -0.27 -1.47 16 28 H 0.28 8.93 7.12 -40.82 -0.29 8.64 16 29 H 0.09 1.77 8.14 -51.92 -0.42 1.35 16 30 H 0.09 1.75 7.95 -51.91 -0.41 1.34 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.80 7.47 -51.93 -0.39 0.42 16 33 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.55 7.77 -51.93 -0.40 0.14 16 36 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.09 1.52 6.55 -51.93 -0.34 1.18 16 38 H 0.07 0.96 8.01 -51.93 -0.42 0.54 16 39 H 0.40 2.44 8.42 -40.82 -0.34 2.10 16 40 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.76 8.10 -51.92 -0.42 0.34 16 43 H 0.07 0.68 7.83 -51.93 -0.41 0.27 16 44 H 0.10 0.58 8.07 -51.93 -0.42 0.17 16 45 H 0.09 0.59 8.03 -51.93 -0.42 0.18 16 46 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 406.52 15.07 6.13 6.13 Total: -1.00 -37.79 406.52 -10.78 -48.57 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -8.11 Total: 1.71 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: -1.70 Total: -7.62 kcal Atomic # 7 Polarization: -43.30 SS G_CDS: -0.07 Total: -43.36 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: 0.17 Total: -20.19 kcal Atomic # 14 Polarization: 25.10 SS G_CDS: -5.09 Total: 20.02 kcal Atomic # 16 Polarization: -3.14 SS G_CDS: -2.11 Total: -5.24 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -37.79 -10.78 -48.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497045656.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.126 kcal (2) G-P(sol) polarization free energy of solvation -37.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds