Wall clock time and date at job start Tue Mar 31 2020 23:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86802 * 120.00254 * 2 1 4 4 H 1.48495 * 109.47088 * 270.00644 * 3 2 1 5 5 H 1.48494 * 109.47213 * 150.00041 * 3 2 1 6 6 H 1.48507 * 109.46882 * 30.00205 * 3 2 1 7 7 C 1.38800 * 119.99728 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99681 * 180.02562 * 7 2 1 9 9 S 1.76194 * 120.00217 * 359.97438 * 7 2 1 10 10 C 1.81002 * 100.00271 * 180.02562 * 9 7 2 11 11 C 1.50692 * 109.47472 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99815 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00126 * 180.02562 * 11 10 9 14 14 C 1.47423 * 125.64959 * 355.10575 * 13 11 10 15 15 C 1.54913 * 104.83169 * 155.83478 * 14 13 11 16 16 C 1.55152 * 101.58482 * 37.00883 * 15 14 13 17 17 C 1.47027 * 125.64635 * 174.79343 * 13 11 10 18 18 H 1.08999 * 109.88855 * 300.51475 * 17 13 11 19 19 C 1.53001 * 109.88118 * 61.68204 * 17 13 11 20 20 N 1.46499 * 109.47159 * 185.22889 * 19 17 13 21 21 C 1.34776 * 120.00138 * 184.99594 * 20 19 17 22 22 O 1.21279 * 120.00065 * 0.02562 * 21 20 19 23 23 C 1.50701 * 119.99941 * 180.02562 * 21 20 19 24 24 C 1.52993 * 109.47104 * 180.02562 * 23 21 20 25 25 C 1.52999 * 109.47373 * 179.97438 * 24 23 21 26 26 C 1.52997 * 117.50136 * 243.62302 * 25 24 23 27 27 C 1.52997 * 117.50153 * 174.99735 * 25 24 23 28 28 H 0.97000 * 120.00427 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47123 * 300.00215 * 10 9 7 30 30 H 1.09006 * 109.46726 * 60.00350 * 10 9 7 31 31 H 1.09005 * 110.36292 * 274.67398 * 14 13 11 32 32 H 1.08999 * 110.36770 * 36.88097 * 14 13 11 33 33 H 1.09004 * 111.00250 * 155.08274 * 15 14 13 34 34 H 1.08996 * 111.00405 * 278.93167 * 15 14 13 35 35 H 1.09007 * 110.71968 * 82.86080 * 16 15 14 36 36 H 1.08992 * 110.72478 * 205.95836 * 16 15 14 37 37 H 1.08996 * 109.47275 * 305.23002 * 19 17 13 38 38 H 1.09001 * 109.47116 * 65.23196 * 19 17 13 39 39 H 0.97006 * 119.99792 * 5.00474 * 20 19 17 40 40 H 1.08999 * 109.46998 * 299.99868 * 23 21 20 41 41 H 1.08995 * 109.47195 * 59.99826 * 23 21 20 42 42 H 1.09009 * 109.47274 * 299.99795 * 24 23 21 43 43 H 1.09003 * 109.47720 * 59.99424 * 24 23 21 44 44 H 1.09000 * 115.55105 * 29.33026 * 25 24 23 45 45 H 1.08997 * 117.49996 * 359.97438 * 26 25 24 46 46 H 1.08999 * 117.50548 * 145.01891 * 26 25 24 47 47 H 1.09003 * 117.49880 * 214.97859 * 27 25 24 48 48 H 1.09003 * 117.50157 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 3.5478 1.4401 0.7000 6 1 1.4478 2.6527 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 16 1.1292 -2.7280 -0.0005 10 6 2.5157 -3.8915 -0.0005 11 6 1.9873 -5.3027 0.0001 12 8 0.7910 -5.5023 0.0000 13 7 2.8440 -6.3431 0.0007 14 6 4.3116 -6.2477 -0.1013 15 6 4.8399 -7.5499 0.5506 16 6 3.7766 -8.5820 0.0911 17 6 2.4701 -7.7609 0.1098 18 1 1.9356 -7.9326 1.0441 19 6 1.5909 -8.1599 -1.0770 20 7 1.1215 -9.5358 -0.8962 21 6 0.4106 -10.1388 -1.8696 22 8 0.1598 -9.5424 -2.8955 23 6 -0.0728 -11.5539 -1.6833 24 6 -0.8472 -11.9962 -2.9264 25 6 -1.3375 -13.4331 -2.7376 26 6 -0.7891 -14.4976 -3.6900 27 6 -2.2368 -14.0216 -3.8265 28 1 -0.4851 -0.8400 0.0004 29 1 3.1243 -3.7314 -0.8905 30 1 3.1243 -3.7314 0.8895 31 1 4.6165 -6.1959 -1.1466 32 1 4.6737 -5.3752 0.4424 33 1 5.8265 -7.8073 0.1652 34 1 4.8569 -7.4638 1.6371 35 1 3.9966 -8.9407 -0.9145 36 1 3.7192 -9.4147 0.7920 37 1 0.7342 -7.4886 -1.1365 38 1 2.1705 -8.0918 -1.9977 39 1 1.3222 -10.0129 -0.0758 40 1 0.7823 -12.2133 -1.5348 41 1 -0.7253 -11.6032 -0.8117 42 1 -1.7024 -11.3368 -3.0755 43 1 -0.1944 -11.9469 -3.7980 44 1 -1.5330 -13.7316 -1.7077 45 1 -0.0794 -14.1741 -4.4515 46 1 -0.6236 -15.4966 -3.2869 47 1 -3.0237 -14.7076 -3.5130 48 1 -2.4796 -13.3850 -4.6773 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497045656.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:59:22 Heat of formation + Delta-G solvation = -91.644154 kcal Electronic energy + Delta-G solvation = -26485.172387 eV Core-core repulsion = 22665.155917 eV Total energy + Delta-G solvation = -3820.016471 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.53389 -40.67195 -38.71827 -38.35064 -35.92325 -34.77702 -33.40174 -33.00038 -31.42107 -30.13294 -27.16012 -27.11574 -25.30577 -23.82289 -23.21917 -22.15904 -21.66003 -21.26957 -20.67406 -19.93375 -18.40409 -18.05773 -17.69654 -17.06003 -16.89299 -16.52786 -16.34940 -16.05324 -15.76524 -15.57405 -15.35862 -15.15746 -14.61218 -14.53256 -14.46109 -14.17801 -14.08046 -13.88271 -13.68984 -13.60854 -13.06244 -13.01066 -12.76605 -12.46298 -12.26627 -12.19339 -12.14902 -12.04139 -11.94946 -11.68392 -11.57807 -11.27652 -11.13171 -11.12250 -10.91451 -10.77890 -10.35967 -10.18910 -9.86135 -8.95523 -8.91633 -6.31303 1.08835 1.39002 1.49476 1.59850 1.60028 1.76442 1.80233 2.29095 2.33621 2.91087 2.99985 3.05645 3.37146 3.48426 3.68103 3.73889 3.78853 3.79265 4.01826 4.03914 4.07076 4.08771 4.18168 4.27531 4.29087 4.36259 4.40724 4.57179 4.59136 4.69417 4.76431 4.77110 4.80430 4.90674 4.95836 5.03597 5.05886 5.09209 5.12495 5.22449 5.27522 5.32219 5.37832 5.44823 5.61255 6.11293 6.24825 6.49751 6.96404 7.03714 7.23230 8.47793 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016646 B = 0.001964 C = 0.001794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.704633 B =14251.021208 C =15606.023140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.019 4.019 3 Si 1.140 2.860 4 H -0.268 1.268 5 H -0.260 1.260 6 H -0.278 1.278 7 C -0.613 4.613 8 H 0.076 0.924 9 S -0.197 6.197 10 C -0.100 4.100 11 C 0.544 3.456 12 O -0.560 6.560 13 N -0.611 5.611 14 C 0.083 3.917 15 C -0.119 4.119 16 C -0.116 4.116 17 C 0.128 3.872 18 H 0.082 0.918 19 C 0.116 3.884 20 N -0.709 5.709 21 C 0.502 3.498 22 O -0.597 6.597 23 C -0.122 4.122 24 C -0.075 4.075 25 C -0.153 4.153 26 C -0.176 4.176 27 C -0.193 4.193 28 H 0.260 0.740 29 H 0.105 0.895 30 H 0.111 0.889 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.114 0.886 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.118 0.882 37 H 0.031 0.969 38 H 0.057 0.943 39 H 0.420 0.580 40 H 0.129 0.871 41 H 0.119 0.881 42 H 0.048 0.952 43 H 0.054 0.946 44 H 0.124 0.876 45 H 0.089 0.911 46 H 0.108 0.892 47 H 0.104 0.896 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.857 -31.554 1.268 33.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.222 4.222 3 Si 0.958 3.042 4 H -0.194 1.194 5 H -0.184 1.184 6 H -0.204 1.204 7 C -0.760 4.760 8 H 0.094 0.906 9 S 0.029 5.971 10 C -0.251 4.251 11 C 0.332 3.668 12 O -0.439 6.439 13 N -0.346 5.346 14 C -0.039 4.039 15 C -0.157 4.157 16 C -0.153 4.153 17 C 0.024 3.976 18 H 0.100 0.900 19 C -0.010 4.010 20 N -0.363 5.363 21 C 0.291 3.709 22 O -0.477 6.477 23 C -0.162 4.162 24 C -0.113 4.113 25 C -0.171 4.171 26 C -0.213 4.213 27 C -0.230 4.230 28 H 0.071 0.929 29 H 0.124 0.876 30 H 0.129 0.871 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.133 0.867 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.136 0.864 37 H 0.050 0.950 38 H 0.075 0.925 39 H 0.258 0.742 40 H 0.147 0.853 41 H 0.137 0.863 42 H 0.067 0.933 43 H 0.073 0.927 44 H 0.142 0.858 45 H 0.107 0.893 46 H 0.127 0.873 47 H 0.123 0.877 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 9.688 -29.756 0.555 31.298 hybrid contribution 0.894 -0.932 -0.058 1.292 sum 10.581 -30.688 0.498 32.465 Atomic orbital electron populations 1.70887 1.08055 1.29978 1.45893 1.27888 0.96302 1.06451 0.91603 0.82680 0.74069 0.69317 0.78181 1.19359 1.18441 1.20356 1.24046 0.96504 0.92614 1.62879 0.90589 1.85107 1.13183 1.01300 1.97463 1.23159 1.02017 0.93325 1.06609 1.19770 0.85577 0.86017 0.75443 1.90700 1.17043 1.85628 1.50484 1.48448 1.08545 1.04936 1.72720 1.22770 0.77240 1.01557 1.02283 1.22793 0.99696 0.91519 1.01643 1.22788 0.90428 0.97881 1.04229 1.21904 0.97988 0.80717 0.96983 0.90005 1.21452 0.97654 0.83381 0.98525 1.45705 1.55576 1.14089 1.20925 1.21635 0.76762 0.90176 0.82328 1.90723 1.58317 1.68163 1.30505 1.21671 1.03247 0.90225 1.01037 1.20860 0.99016 0.94258 0.97145 1.22334 1.04483 0.93081 0.97156 1.23114 0.96346 0.99484 1.02369 1.23042 0.94519 1.04217 1.01206 0.92935 0.87630 0.87054 0.90343 0.89706 0.86749 0.89530 0.89639 0.86402 0.95005 0.92460 0.74219 0.85307 0.86300 0.93317 0.92744 0.85789 0.89256 0.87320 0.87720 0.89863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -59.06 13.67 21.65 0.30 -58.76 16 2 C -0.02 -1.15 5.49 84.86 0.47 -0.68 16 3 Si 1.14 49.90 29.92 68.60 2.05 51.96 16 4 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 5 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 6 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 7 C -0.61 -35.97 9.50 67.95 0.65 -35.33 16 8 H 0.08 4.17 7.80 -2.91 -0.02 4.14 16 9 S -0.20 -11.20 19.60 -56.49 -1.11 -12.31 16 10 C -0.10 -4.13 5.09 71.23 0.36 -3.77 16 11 C 0.54 21.15 7.69 87.65 0.67 21.82 16 12 O -0.56 -27.03 14.65 -3.04 -0.04 -27.07 16 13 N -0.61 -16.29 3.07 -788.05 -2.42 -18.71 16 14 C 0.08 1.43 6.74 86.86 0.59 2.01 16 15 C -0.12 -1.07 7.08 31.99 0.23 -0.84 16 16 C -0.12 -1.10 6.23 31.78 0.20 -0.90 16 17 C 0.13 2.60 2.95 45.34 0.13 2.74 16 18 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 19 C 0.12 3.04 5.08 86.38 0.44 3.48 16 20 N -0.71 -13.09 5.37 -463.06 -2.49 -15.58 16 21 C 0.50 11.35 7.83 87.66 0.69 12.04 16 22 O -0.60 -20.77 15.98 -3.03 -0.05 -20.82 16 23 C -0.12 -1.50 5.66 29.85 0.17 -1.33 16 24 C -0.07 -1.24 4.78 30.59 0.15 -1.09 16 25 C -0.15 -1.78 5.74 -10.80 -0.06 -1.84 16 26 C -0.18 -1.88 10.18 30.59 0.31 -1.57 16 27 C -0.19 -2.41 10.25 30.59 0.31 -2.10 16 28 H 0.26 17.55 7.12 -92.71 -0.66 16.89 16 29 H 0.11 4.04 8.14 -2.40 -0.02 4.03 16 30 H 0.11 4.15 7.95 -2.39 -0.02 4.13 16 31 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 32 H 0.08 1.43 7.47 -2.39 -0.02 1.42 16 33 H 0.11 0.49 8.14 -2.38 -0.02 0.47 16 34 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.08 0.81 7.77 -2.38 -0.02 0.79 16 36 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 37 H 0.03 1.21 6.55 -2.39 -0.02 1.19 16 38 H 0.06 1.63 8.01 -2.39 -0.02 1.61 16 39 H 0.42 3.94 8.42 -92.70 -0.78 3.16 16 40 H 0.13 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.12 0.94 8.14 -2.39 -0.02 0.93 16 42 H 0.05 1.05 8.10 -2.38 -0.02 1.03 16 43 H 0.05 1.07 7.83 -2.39 -0.02 1.05 16 44 H 0.12 0.99 8.07 -2.39 -0.02 0.97 16 45 H 0.09 1.04 8.03 -2.39 -0.02 1.02 16 46 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 47 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 48 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -90.98 406.52 1.82 -89.17 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: 0.28 Total: 19.49 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: 5.29 Total: -7.36 kcal Atomic # 7 Polarization: -88.45 SS G_CDS: -4.61 Total: -93.05 kcal Atomic # 8 Polarization: -47.80 SS G_CDS: -0.09 Total: -47.89 kcal Atomic # 14 Polarization: 49.90 SS G_CDS: 2.05 Total: 51.96 kcal Atomic # 16 Polarization: -11.20 SS G_CDS: -1.11 Total: -12.31 kcal Total: -90.98 1.82 -89.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497045656.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.477 kcal (2) G-P(sol) polarization free energy of solvation -90.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds