Wall clock time and date at job start Tue Mar 31 2020 22:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 120.00519 * 2 1 4 4 H 1.48504 * 109.47136 * 91.05446 * 3 2 1 5 5 H 1.48492 * 109.47392 * 211.05940 * 3 2 1 6 6 H 1.48501 * 109.46838 * 331.05862 * 3 2 1 7 7 C 1.38817 * 119.99914 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99439 * 15.54330 * 7 2 1 9 9 N 1.36934 * 120.00352 * 195.53585 * 7 2 1 10 10 C 1.47238 * 121.33670 * 37.00975 * 9 7 2 11 11 C 1.53272 * 107.62799 * 115.71814 * 10 9 7 12 12 C 1.50602 * 110.81371 * 47.65778 * 11 10 9 13 13 C 1.38987 * 117.60298 * 160.27408 * 12 11 10 14 14 C 1.37905 * 120.58023 * 179.38710 * 13 12 11 15 15 C 1.38265 * 119.82478 * 0.02562 * 14 13 12 16 16 C 1.37960 * 119.71756 * 0.18655 * 15 14 13 17 17 C 1.37672 * 122.87240 * 340.03196 * 12 11 10 18 18 C 1.46685 * 121.34156 * 217.28835 * 9 7 2 19 19 H 1.09003 * 109.42949 * 104.17464 * 18 9 7 20 20 C 1.52999 * 109.43482 * 344.30365 * 18 9 7 21 21 N 1.46503 * 109.46983 * 60.23339 * 20 18 9 22 22 C 1.34780 * 119.99674 * 185.07375 * 21 20 18 23 23 O 1.21276 * 119.99968 * 0.02562 * 22 21 20 24 24 C 1.50698 * 119.99809 * 179.97438 * 22 21 20 25 25 C 1.50703 * 109.47232 * 180.02562 * 24 22 21 26 26 C 1.41377 * 126.58263 * 269.71576 * 25 24 22 27 27 C 1.34509 * 106.84085 * 179.82904 * 26 25 24 28 28 O 1.34301 * 108.42381 * 0.43080 * 27 26 25 29 29 C 1.34306 * 109.47394 * 359.72116 * 28 27 26 30 30 H 0.97004 * 120.00036 * 359.97438 * 1 2 3 31 31 H 1.08995 * 109.77615 * 235.30291 * 10 9 7 32 32 H 1.09001 * 109.77850 * 356.10920 * 10 9 7 33 33 H 1.08997 * 109.31506 * 287.25058 * 11 10 9 34 34 H 1.09001 * 109.08178 * 167.91067 * 11 10 9 35 35 H 1.07996 * 119.70959 * 359.40950 * 13 12 11 36 36 H 1.08000 * 120.08717 * 180.02562 * 14 13 12 37 37 H 1.08003 * 120.14065 * 180.21701 * 15 14 13 38 38 H 1.08001 * 119.74176 * 179.97438 * 16 15 14 39 39 H 1.08995 * 109.46961 * 180.22954 * 20 18 9 40 40 H 1.08996 * 109.47421 * 300.23434 * 20 18 9 41 41 H 0.97001 * 120.00492 * 5.07737 * 21 20 18 42 42 H 1.08998 * 109.47508 * 300.00030 * 24 22 21 43 43 H 1.09003 * 109.47094 * 60.00487 * 24 22 21 44 44 H 1.08009 * 126.57557 * 359.97438 * 26 25 24 45 45 H 1.08003 * 125.78978 * 180.11148 * 27 26 25 46 46 H 1.08001 * 125.79172 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.5202 2.0334 1.3999 5 1 3.5364 1.4466 -0.7223 6 1 1.4368 2.6590 -0.6775 7 6 2.0102 -1.2022 -0.0005 8 1 1.4997 -2.1203 -0.2516 9 7 3.3420 -1.2241 0.3171 10 6 3.8954 -0.3431 1.3589 11 6 4.4153 -1.2343 2.4924 12 6 5.2574 -2.3573 1.9468 13 6 6.1307 -2.9915 2.8225 14 6 6.9215 -4.0357 2.3911 15 6 6.8472 -4.4570 1.0763 16 6 5.9844 -3.8264 0.2038 17 6 5.1899 -2.7732 0.6361 18 6 4.2758 -2.1219 -0.3711 19 1 4.8702 -1.5500 -1.0837 20 6 3.4884 -3.2013 -1.1166 21 7 2.6080 -2.5699 -2.1028 22 6 1.7403 -3.3208 -2.8099 23 8 1.6881 -4.5189 -2.6294 24 6 0.8343 -2.6714 -3.8240 25 6 -0.0311 -3.7222 -4.4703 26 6 0.2701 -4.4606 -5.6377 27 6 -0.7695 -5.2858 -5.8560 28 8 -1.6835 -5.0808 -4.8936 29 6 -1.2411 -4.1336 -4.0504 30 1 -0.4850 0.8401 0.0004 31 1 4.7134 0.2473 0.9463 32 1 3.1151 0.3186 1.7350 33 1 3.5700 -1.6527 3.0386 34 1 5.0181 -0.6315 3.1717 35 1 6.1903 -2.6639 3.8498 36 1 7.5971 -4.5231 3.0785 37 1 7.4617 -5.2766 0.7339 38 1 5.9264 -4.1549 -0.8234 39 1 4.1819 -3.8711 -1.6249 40 1 2.8889 -3.7699 -0.4058 41 1 2.6495 -1.6116 -2.2470 42 1 0.2018 -1.9354 -3.3276 43 1 1.4370 -2.1775 -4.5862 44 1 1.1646 -4.3795 -6.2377 45 1 -0.8569 -5.9899 -6.6703 46 1 -1.7676 -3.7645 -3.1827 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001503677009.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:05 Heat of formation + Delta-G solvation = 37.719349 kcal Electronic energy + Delta-G solvation = -29728.027880 eV Core-core repulsion = 25778.177080 eV Total energy + Delta-G solvation = -3949.850800 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.27505 -39.85108 -38.77991 -36.54912 -34.29718 -33.58084 -32.50691 -32.11617 -30.49433 -30.17352 -29.04116 -27.72249 -26.33279 -24.52979 -23.05846 -22.04590 -21.35754 -21.21477 -20.47061 -19.60682 -19.22531 -17.31457 -16.90149 -16.27454 -16.07851 -15.82130 -15.46226 -15.28167 -14.87146 -14.81523 -14.46480 -14.36611 -14.08751 -13.63790 -13.17841 -12.94315 -12.84114 -12.70545 -12.57496 -12.45286 -12.35331 -12.10478 -11.99983 -11.88546 -11.49183 -11.23804 -11.14832 -10.94483 -10.74348 -10.61323 -10.24771 -9.80984 -9.70092 -9.59303 -9.10929 -8.78505 -8.49177 -8.25461 -8.19416 -8.16707 -6.98706 -6.08070 -3.56242 1.65453 1.68637 2.04152 2.82482 3.19569 3.35529 3.36945 3.38304 3.39780 3.98360 4.09723 4.38397 4.71389 5.01094 5.08208 5.10515 5.12228 5.22728 5.25279 5.29846 5.32596 5.54487 5.61653 5.64931 5.69193 5.82295 5.87583 5.91422 5.93848 5.97285 6.00814 6.08861 6.19769 6.31616 6.32155 6.36135 6.41870 6.49197 6.61478 6.70791 6.74585 6.76809 6.79058 7.05811 7.20557 7.31651 7.36952 7.86073 8.25731 8.32329 8.77971 8.98197 9.54724 9.97582 11.05128 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010680 B = 0.003942 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2621.008075 B = 7102.093135 C = 9180.151745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.035 3.965 3 Si 0.879 3.121 4 H -0.286 1.286 5 H -0.270 1.270 6 H -0.302 1.302 7 C -0.264 4.264 8 H 0.094 0.906 9 N -0.602 5.602 10 C 0.125 3.875 11 C -0.100 4.100 12 C -0.051 4.051 13 C -0.129 4.129 14 C -0.127 4.127 15 C -0.131 4.131 16 C -0.117 4.117 17 C -0.078 4.078 18 C 0.198 3.802 19 H 0.049 0.951 20 C 0.141 3.859 21 N -0.696 5.696 22 C 0.515 3.485 23 O -0.557 6.557 24 C -0.073 4.073 25 C -0.154 4.154 26 C -0.198 4.198 27 C -0.055 4.055 28 O -0.180 6.180 29 C -0.026 4.026 30 H 0.264 0.736 31 H 0.032 0.968 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.062 0.938 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.116 0.884 38 H 0.120 0.880 39 H 0.057 0.943 40 H 0.070 0.930 41 H 0.411 0.589 42 H 0.109 0.891 43 H 0.094 0.906 44 H 0.143 0.857 45 H 0.197 0.803 46 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.488 -4.552 -4.772 9.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.166 4.166 3 Si 0.709 3.291 4 H -0.213 1.213 5 H -0.195 1.195 6 H -0.230 1.230 7 C -0.392 4.392 8 H 0.112 0.888 9 N -0.326 5.326 10 C 0.000 4.000 11 C -0.139 4.139 12 C -0.051 4.051 13 C -0.147 4.147 14 C -0.146 4.146 15 C -0.149 4.149 16 C -0.136 4.136 17 C -0.080 4.080 18 C 0.091 3.909 19 H 0.066 0.934 20 C 0.017 3.983 21 N -0.348 5.348 22 C 0.301 3.699 23 O -0.436 6.436 24 C -0.113 4.113 25 C -0.156 4.156 26 C -0.218 4.218 27 C -0.122 4.122 28 O -0.076 6.076 29 C -0.094 4.094 30 H 0.074 0.926 31 H 0.051 0.949 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.134 0.866 38 H 0.138 0.862 39 H 0.075 0.925 40 H 0.088 0.912 41 H 0.248 0.752 42 H 0.127 0.873 43 H 0.113 0.887 44 H 0.160 0.840 45 H 0.214 0.786 46 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 6.988 -5.438 -4.642 9.998 hybrid contribution 0.777 1.535 0.222 1.735 sum 7.765 -3.903 -4.420 9.750 Atomic orbital electron populations 1.69788 1.05665 1.26691 1.52043 1.25451 0.95137 0.97452 0.98550 0.86976 0.79923 0.84670 0.77538 1.21349 1.19464 1.23012 1.18961 0.82172 0.94406 1.43683 0.88838 1.44332 1.05217 1.44238 1.38825 1.21495 0.97128 0.92644 0.88723 1.21063 0.98284 0.95430 0.99111 1.19586 0.95785 0.97005 0.92732 1.21174 0.97264 0.97067 0.99203 1.20947 0.99920 0.97681 0.96002 1.20959 0.99663 1.00329 0.93973 1.21144 0.96447 0.96174 0.99825 1.20102 0.97213 0.96025 0.94668 1.19569 0.89710 0.90696 0.90894 0.93406 1.21217 0.92270 0.94255 0.90596 1.45948 1.38258 1.12018 1.38543 1.20332 0.80619 0.87097 0.81838 1.90644 1.69519 1.15150 1.68318 1.19990 0.97208 0.96657 0.97426 1.19852 0.96027 1.01988 0.97707 1.21641 1.00643 0.99934 0.99544 1.23835 0.89820 1.03642 0.94929 1.84036 1.42987 1.47927 1.32662 1.23910 0.96718 0.92447 0.96298 0.92578 0.94949 0.90485 0.90306 0.91944 0.86691 0.86759 0.86599 0.86211 0.92510 0.91212 0.75216 0.87280 0.88727 0.83958 0.78625 0.78078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.78 13.97 55.49 0.78 -24.00 16 2 C 0.03 0.89 5.31 -17.43 -0.09 0.79 16 3 Si 0.88 20.06 24.67 -169.99 -4.19 15.86 16 4 H -0.29 -6.46 6.54 56.52 0.37 -6.09 16 5 H -0.27 -5.99 7.08 56.52 0.40 -5.59 16 6 H -0.30 -7.14 7.11 56.52 0.40 -6.74 16 7 C -0.26 -6.41 7.37 -15.06 -0.11 -6.52 16 8 H 0.09 2.53 6.18 -52.49 -0.32 2.20 16 9 N -0.60 -12.76 2.57 -166.03 -0.43 -13.18 16 10 C 0.13 2.49 4.35 -3.50 -0.02 2.48 16 11 C -0.10 -1.72 5.88 -27.79 -0.16 -1.89 16 12 C -0.05 -0.86 5.76 -104.60 -0.60 -1.46 16 13 C -0.13 -1.87 9.59 -39.43 -0.38 -2.25 16 14 C -0.13 -1.68 10.04 -39.69 -0.40 -2.08 16 15 C -0.13 -1.75 10.05 -39.67 -0.40 -2.15 16 16 C -0.12 -1.75 9.05 -39.46 -0.36 -2.11 16 17 C -0.08 -1.34 5.43 -104.56 -0.57 -1.90 16 18 C 0.20 3.64 3.04 -68.93 -0.21 3.43 16 19 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 20 C 0.14 2.61 4.14 -4.04 -0.02 2.60 16 21 N -0.70 -12.88 3.51 -60.30 -0.21 -13.10 16 22 C 0.52 9.80 7.82 -10.99 -0.09 9.71 16 23 O -0.56 -12.42 16.03 5.56 0.09 -12.33 16 24 C -0.07 -1.16 6.22 -29.03 -0.18 -1.34 16 25 C -0.15 -2.46 4.66 -104.74 -0.49 -2.95 16 26 C -0.20 -2.81 10.87 -39.71 -0.43 -3.24 16 27 C -0.06 -0.71 12.09 29.41 0.36 -0.35 16 28 O -0.18 -2.70 10.65 5.71 0.06 -2.64 16 29 C -0.03 -0.41 12.01 29.42 0.35 -0.06 16 30 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.03 0.62 7.87 -51.93 -0.41 0.21 16 32 H 0.08 1.66 4.51 -51.93 -0.23 1.43 16 33 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 34 H 0.06 0.92 8.11 -51.93 -0.42 0.50 16 35 H 0.12 1.43 8.05 -52.49 -0.42 1.01 16 36 H 0.11 1.21 8.06 -52.49 -0.42 0.78 16 37 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 38 H 0.12 1.61 6.71 -52.49 -0.35 1.25 16 39 H 0.06 0.96 6.63 -51.93 -0.34 0.61 16 40 H 0.07 1.50 7.81 -51.93 -0.41 1.10 16 41 H 0.41 7.55 7.31 -40.82 -0.30 7.25 16 42 H 0.11 1.77 8.14 -51.93 -0.42 1.35 16 43 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 44 H 0.14 1.73 8.06 -52.48 -0.42 1.30 16 45 H 0.20 1.67 8.06 -52.48 -0.42 1.25 16 46 H 0.20 2.83 8.06 -52.49 -0.42 2.41 16 LS Contribution 370.16 15.07 5.58 5.58 Total: -1.00 -30.79 370.16 -8.30 -39.09 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: -6.19 Total: 14.01 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: -3.79 Total: -9.29 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: 0.14 Total: -50.28 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: 0.15 Total: -14.97 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -4.19 Total: 15.86 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.79 -8.30 -39.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001503677009.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.812 kcal (2) G-P(sol) polarization free energy of solvation -30.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds