Wall clock time and date at job start Tue Mar 31 2020 23:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86793 * 119.99814 * 2 1 4 4 H 1.48501 * 109.47049 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47252 * 299.99863 * 3 2 1 6 6 H 1.48499 * 109.47441 * 60.00448 * 3 2 1 7 7 C 1.38801 * 119.99700 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99304 * 179.97438 * 7 2 1 9 9 S 1.76192 * 120.00420 * 359.97438 * 7 2 1 10 10 C 1.80999 * 100.00045 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47052 * 179.97438 * 10 9 7 12 12 O 1.21276 * 120.00233 * 0.02562 * 11 10 9 13 13 N 1.34781 * 120.00071 * 179.97438 * 11 10 9 14 14 C 1.46494 * 120.00036 * 179.97438 * 13 11 10 15 15 C 1.53006 * 109.46769 * 174.91255 * 14 13 11 16 16 N 1.46498 * 115.55164 * 324.97104 * 15 14 13 17 17 C 1.34778 * 119.99984 * 279.60483 * 16 15 14 18 18 O 1.21283 * 120.00019 * 354.99669 * 17 16 15 19 19 C 1.50697 * 119.99574 * 174.99364 * 17 16 15 20 20 C 1.53003 * 109.46941 * 179.97438 * 19 17 16 21 21 C 1.53000 * 109.47211 * 180.02562 * 20 19 17 22 22 C 1.52995 * 109.46981 * 60.00279 * 21 20 19 23 23 C 1.53003 * 109.47433 * 300.00040 * 22 21 20 24 24 C 1.52996 * 109.47175 * 59.99670 * 23 22 21 25 25 C 1.53002 * 117.51512 * 110.67640 * 15 14 13 26 26 C 1.52996 * 60.00362 * 107.47776 * 25 15 14 27 27 H 0.97000 * 120.00452 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.46959 * 60.00137 * 10 9 7 29 29 H 1.08990 * 109.47498 * 299.99862 * 10 9 7 30 30 H 0.97001 * 119.99360 * 0.02562 * 13 11 10 31 31 H 1.09007 * 109.47003 * 54.91909 * 14 13 11 32 32 H 1.08992 * 109.47437 * 294.91633 * 14 13 11 33 33 H 0.96996 * 119.99520 * 99.60852 * 16 15 14 34 34 H 1.08997 * 109.47794 * 299.99869 * 19 17 16 35 35 H 1.09000 * 109.46783 * 60.00079 * 20 19 17 36 36 H 1.08999 * 109.47336 * 300.00468 * 20 19 17 37 37 H 1.08999 * 109.46889 * 300.00105 * 21 20 19 38 38 H 1.09000 * 109.47001 * 180.02562 * 21 20 19 39 39 H 1.08999 * 109.47451 * 60.00170 * 22 21 20 40 40 H 1.09003 * 109.47044 * 179.97438 * 22 21 20 41 41 H 1.09000 * 109.47296 * 180.02562 * 23 22 21 42 42 H 1.09006 * 109.46287 * 300.00408 * 23 22 21 43 43 H 1.08999 * 109.47558 * 180.02562 * 24 23 22 44 44 H 1.09009 * 109.47029 * 60.00354 * 24 23 22 45 45 H 1.08996 * 117.49606 * 214.96835 * 25 15 14 46 46 H 1.08998 * 117.49692 * 359.97438 * 25 15 14 47 47 H 1.08997 * 117.50251 * 252.51251 * 26 25 15 48 48 H 1.09001 * 117.52025 * 107.47577 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9874 -5.3027 0.0001 12 8 0.7912 -5.5023 0.0000 13 7 2.8442 -6.3432 -0.0003 14 6 2.3304 -7.7151 0.0009 15 6 3.4971 -8.6966 -0.1278 16 7 4.6094 -8.2491 -0.9697 17 6 4.5242 -8.3538 -2.3107 18 8 3.5671 -8.9007 -2.8166 19 6 5.6180 -7.7913 -3.1813 20 6 5.2787 -8.0417 -4.6521 21 6 6.3895 -7.4712 -5.5361 22 6 7.7148 -8.1553 -5.1949 23 6 8.0542 -7.9050 -3.7241 24 6 6.9434 -8.4754 -2.8401 25 6 3.8355 -9.5561 1.0918 26 6 3.1666 -10.1905 -0.1292 27 1 -0.4851 0.8400 0.0004 28 1 3.1245 -3.7313 0.8895 29 1 3.1245 -3.7314 -0.8904 30 1 3.8009 -6.1835 -0.0006 31 1 1.6490 -7.8486 -0.8394 32 1 1.7986 -7.9031 0.9334 33 1 5.4072 -7.8775 -0.5619 34 1 5.7069 -6.7192 -3.0061 35 1 4.3343 -7.5548 -4.8951 36 1 5.1901 -9.1139 -4.8271 37 1 6.4784 -6.3990 -5.3612 38 1 6.1476 -7.6493 -6.5839 39 1 7.6259 -9.2275 -5.3698 40 1 8.5061 -7.7492 -5.8250 41 1 8.9986 -8.3920 -3.4812 42 1 8.1431 -6.8327 -3.5493 43 1 7.1849 -8.2967 -1.7924 44 1 6.8544 -9.5477 -3.0150 45 1 4.8857 -9.7887 1.2679 46 1 3.2272 -9.4222 1.9863 47 1 2.1181 -10.4741 -0.0382 48 1 3.7765 -10.8403 -0.7568 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505953975.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:19 Heat of formation + Delta-G solvation = -73.535859 kcal Electronic energy + Delta-G solvation = -27365.717702 eV Core-core repulsion = 23546.486465 eV Total energy + Delta-G solvation = -3819.231236 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.72990 -39.25950 -38.33606 -37.15867 -33.94190 -33.38097 -32.42877 -31.17776 -31.02093 -29.74958 -26.41466 -25.41651 -24.37062 -22.99565 -22.87686 -21.37374 -20.33340 -20.11057 -19.77173 -17.97803 -17.48508 -16.91750 -16.31698 -15.80718 -15.57277 -15.16920 -14.98322 -14.80653 -14.66008 -14.50396 -14.46055 -13.94511 -13.87528 -13.33341 -13.21003 -13.02531 -12.78994 -12.61857 -12.56796 -12.42270 -11.91497 -11.76748 -11.67424 -11.50044 -11.21573 -11.07489 -11.02063 -10.97762 -10.78895 -10.76076 -10.54342 -10.42070 -9.82327 -9.80403 -9.46930 -9.33450 -9.07833 -8.84466 -8.22555 -6.49676 -6.21714 -3.92135 2.42989 2.67778 3.03675 3.11283 3.21212 3.26672 3.30527 3.38108 3.73423 4.17242 4.20133 4.27177 4.33367 4.36893 4.51245 4.62079 4.81903 4.83046 4.86312 5.02838 5.08261 5.13423 5.13772 5.15054 5.21117 5.28546 5.28821 5.46517 5.50486 5.59302 5.62055 5.65191 5.68698 5.75266 5.76881 5.79255 5.83722 5.88011 5.89534 5.99522 6.10207 6.12251 6.23461 6.62528 7.18937 7.59481 7.71236 8.01670 8.35144 8.62656 9.23541 10.85782 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010103 B = 0.002753 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2770.670559 B =10169.283799 C =12128.175777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.059 6.059 10 C -0.152 4.152 11 C 0.531 3.469 12 O -0.516 6.516 13 N -0.732 5.732 14 C 0.154 3.846 15 C 0.084 3.916 16 N -0.703 5.703 17 C 0.522 3.478 18 O -0.523 6.523 19 C -0.107 4.107 20 C -0.099 4.099 21 C -0.121 4.121 22 C -0.122 4.122 23 C -0.119 4.119 24 C -0.109 4.109 25 C -0.170 4.170 26 C -0.150 4.150 27 H 0.268 0.732 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.395 0.605 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.401 0.599 34 H 0.100 0.900 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.100 0.900 46 H 0.108 0.892 47 H 0.105 0.895 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.852 -21.107 -3.835 28.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.303 4.303 11 C 0.317 3.683 12 O -0.390 6.390 13 N -0.387 5.387 14 C 0.029 3.971 15 C -0.004 4.004 16 N -0.356 5.356 17 C 0.309 3.691 18 O -0.397 6.397 19 C -0.128 4.128 20 C -0.137 4.137 21 C -0.159 4.159 22 C -0.159 4.159 23 C -0.156 4.156 24 C -0.147 4.147 25 C -0.207 4.207 26 C -0.188 4.188 27 H 0.078 0.922 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.228 0.772 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.237 0.763 34 H 0.118 0.882 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.118 0.882 46 H 0.126 0.874 47 H 0.124 0.876 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 15.964 -21.722 -4.227 27.286 hybrid contribution 2.852 1.576 0.247 3.267 sum 18.815 -20.146 -3.980 27.852 Atomic orbital electron populations 1.70029 1.05953 1.27349 1.46913 1.24998 0.95028 0.99039 0.94565 0.86115 0.79551 0.81895 0.77908 1.19635 1.20560 1.20566 1.22903 0.94914 0.91662 1.58848 0.90916 1.85432 1.04869 0.96272 1.96689 1.23514 1.06575 0.95408 1.04761 1.20308 0.86534 0.86234 0.75242 1.90708 1.15338 1.85552 1.47424 1.45822 1.09788 1.05158 1.77937 1.20991 0.93493 0.79951 1.02707 1.20812 0.90511 0.92425 0.96629 1.45344 1.18856 1.65636 1.05799 1.20749 0.87624 0.78692 0.82047 1.90721 1.33626 1.41882 1.73482 1.21401 0.93634 1.01773 0.96015 1.21342 0.98728 1.02111 0.91531 1.21568 0.94493 1.00276 0.99538 1.21562 0.97387 1.00845 0.96112 1.21531 0.97705 1.01396 0.94977 1.21527 0.93143 1.00355 0.99650 1.23475 1.02397 1.02190 0.92673 1.23189 1.02506 0.93391 0.99746 0.92228 0.89290 0.89397 0.77175 0.90435 0.90686 0.76322 0.88214 0.90991 0.91301 0.91698 0.91581 0.91994 0.91921 0.91678 0.91536 0.91626 0.91440 0.88196 0.87359 0.87649 0.88224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.26 13.22 55.49 0.73 -25.53 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.38 29.55 -169.99 -5.02 16.36 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.53 -15.26 9.50 30.94 0.29 -14.97 16 8 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.84 16 10 C -0.15 -3.09 6.16 36.01 0.22 -2.87 16 11 C 0.53 10.17 7.85 -10.98 -0.09 10.09 16 12 O -0.52 -12.10 15.86 5.56 0.09 -12.01 16 13 N -0.73 -10.12 5.40 -60.29 -0.33 -10.44 16 14 C 0.15 1.96 5.90 -4.04 -0.02 1.94 16 15 C 0.08 0.78 2.02 -131.81 -0.27 0.52 16 16 N -0.70 -5.73 4.32 -47.60 -0.21 -5.94 16 17 C 0.52 5.47 7.08 -10.99 -0.08 5.39 16 18 O -0.52 -7.67 15.55 5.55 0.09 -7.58 16 19 C -0.11 -0.85 2.54 -91.77 -0.23 -1.09 16 20 C -0.10 -0.89 4.49 -26.73 -0.12 -1.01 16 21 C -0.12 -0.87 5.92 -26.73 -0.16 -1.03 16 22 C -0.12 -0.73 5.92 -26.73 -0.16 -0.89 16 23 C -0.12 -0.64 5.92 -26.73 -0.16 -0.80 16 24 C -0.11 -0.63 5.10 -26.73 -0.14 -0.77 16 25 C -0.17 -1.16 10.10 -26.73 -0.27 -1.43 16 26 C -0.15 -1.29 9.56 -26.73 -0.26 -1.55 16 27 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 28 H 0.09 1.65 8.14 -51.91 -0.42 1.22 16 29 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 30 H 0.39 4.26 7.76 -40.82 -0.32 3.95 16 31 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.08 0.93 7.91 -51.93 -0.41 0.52 16 33 H 0.40 2.13 8.11 -40.82 -0.33 1.80 16 34 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 36 H 0.07 0.67 8.10 -51.93 -0.42 0.24 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.07 0.28 7.46 -51.93 -0.39 -0.11 16 44 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 45 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.11 0.69 8.05 -51.93 -0.42 0.28 16 47 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 48 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 404.92 15.07 6.10 6.10 Total: -1.00 -36.44 404.92 -10.45 -46.88 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -8.17 Total: 2.46 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: -1.52 Total: -6.47 kcal Atomic # 7 Polarization: -42.11 SS G_CDS: 0.20 Total: -41.91 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: 0.17 Total: -19.59 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -36.44 -10.45 -46.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505953975.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.653 kcal (2) G-P(sol) polarization free energy of solvation -36.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds