Wall clock time and date at job start Tue Mar 31 2020 22:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86793 * 120.00106 * 2 1 4 4 H 1.48502 * 109.47586 * 270.00259 * 3 2 1 5 5 H 1.48501 * 109.47103 * 30.00797 * 3 2 1 6 6 H 1.48503 * 109.47063 * 150.00223 * 3 2 1 7 7 C 1.38799 * 119.99836 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99798 * 359.97438 * 7 2 1 9 9 S 1.76198 * 120.00213 * 179.97438 * 7 2 1 10 10 C 1.80993 * 100.00051 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.46887 * 180.02562 * 10 9 7 12 12 O 1.21277 * 120.00229 * 359.97438 * 11 10 9 13 13 N 1.34780 * 120.00133 * 180.02562 * 11 10 9 14 14 C 1.46965 * 120.59692 * 179.97438 * 13 11 10 15 15 C 1.53371 * 108.63242 * 235.24962 * 14 13 11 16 16 N 1.46963 * 108.63649 * 310.57052 * 15 14 13 17 17 C 1.34777 * 120.60009 * 235.20546 * 16 15 14 18 18 O 1.21286 * 119.99551 * 0.02562 * 17 16 15 19 19 C 1.50696 * 120.00126 * 179.97438 * 17 16 15 20 20 C 1.53004 * 109.46718 * 180.02562 * 19 17 16 21 21 C 1.54894 * 110.75410 * 175.00425 * 20 19 17 22 22 C 1.54266 * 104.31305 * 156.31914 * 21 20 19 23 23 C 1.53869 * 106.60031 * 336.32486 * 22 21 20 24 24 C 1.54266 * 106.59800 * 359.97438 * 23 22 21 25 25 C 1.46966 * 118.80809 * 55.48408 * 16 15 14 26 26 C 1.46967 * 120.59181 * 0.02562 * 13 11 10 27 27 H 0.97000 * 119.99987 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47118 * 60.00748 * 10 9 7 29 29 H 1.08997 * 109.47344 * 300.00164 * 10 9 7 30 30 H 1.08996 * 109.61192 * 115.50443 * 14 13 11 31 31 H 1.08996 * 109.61014 * 354.99127 * 14 13 11 32 32 H 1.09006 * 109.60783 * 190.83111 * 15 14 13 33 33 H 1.09001 * 109.75383 * 70.40455 * 15 14 13 34 34 H 1.08993 * 109.46915 * 60.00700 * 19 17 16 35 35 H 1.08998 * 109.47277 * 300.00137 * 19 17 16 36 36 H 1.08993 * 110.82117 * 51.66076 * 20 19 17 37 37 H 1.09002 * 110.48891 * 37.57340 * 21 20 19 38 38 H 1.08998 * 110.48494 * 275.06427 * 21 20 19 39 39 H 1.09001 * 110.03084 * 95.60669 * 22 21 20 40 40 H 1.08995 * 110.03255 * 217.03136 * 22 21 20 41 41 H 1.08999 * 110.04012 * 119.28327 * 23 22 21 42 42 H 1.09006 * 110.02998 * 240.67078 * 23 22 21 43 43 H 1.09005 * 110.48526 * 142.29451 * 24 23 22 44 44 H 1.09007 * 110.48724 * 264.79935 * 24 23 22 45 45 H 1.08998 * 109.60948 * 64.26547 * 25 16 15 46 46 H 1.09005 * 109.60913 * 184.77290 * 25 16 15 47 47 H 1.08998 * 109.60871 * 244.49559 * 26 13 11 48 48 H 1.09005 * 109.61069 * 4.83663 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4479 2.6526 0.7002 6 1 3.5479 1.4400 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4702 -2.1373 -0.0005 9 16 3.7723 -1.2022 -0.0012 10 6 4.0864 -2.9846 -0.0009 11 6 5.5729 -3.2326 -0.0008 12 8 6.3439 -2.2965 -0.0014 13 7 6.0456 -4.4948 -0.0011 14 6 7.4926 -4.7517 -0.0016 15 6 7.8299 -5.6529 -1.1959 16 7 6.9075 -6.7970 -1.1963 17 6 7.3800 -8.0592 -1.1975 18 8 8.5764 -8.2588 -1.1979 19 6 6.4220 -9.2224 -1.1973 20 6 7.2114 -10.5331 -1.1982 21 6 6.2585 -11.7478 -1.0719 22 6 7.0531 -12.9209 -1.6821 23 6 8.0869 -12.3013 -2.6386 24 6 7.8840 -10.7732 -2.5768 25 6 5.4605 -6.5401 -1.2015 26 6 5.1231 -5.6389 -0.0022 27 1 -0.4850 0.8400 0.0004 28 1 3.6433 -3.4318 -0.8907 29 1 3.6438 -3.4315 0.8893 30 1 7.7758 -5.2511 0.9249 31 1 8.0315 -3.8086 -0.0913 32 1 8.8558 -6.0102 -1.1063 33 1 7.7176 -5.0921 -2.1238 34 1 5.7936 -9.1757 -2.0866 35 1 5.7953 -9.1768 -0.3067 36 1 7.9531 -10.5393 -0.3997 37 1 5.3419 -11.5739 -1.6354 38 1 6.0297 -11.9458 -0.0247 39 1 7.5602 -13.4781 -0.8944 40 1 6.3821 -13.5797 -2.2332 41 1 9.0957 -12.5577 -2.3152 42 1 7.9180 -12.6599 -3.6540 43 1 8.8437 -10.2587 -2.6270 44 1 7.2319 -10.4420 -3.3850 45 1 5.1812 -6.0393 -2.1285 46 1 4.9211 -7.4835 -1.1156 47 1 5.2372 -6.2016 0.9244 48 1 4.0970 -5.2815 -0.0891 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001522427079.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:42 Heat of formation + Delta-G solvation = -101.323549 kcal Electronic energy + Delta-G solvation = -27208.977264 eV Core-core repulsion = 23388.541063 eV Total energy + Delta-G solvation = -3820.436201 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.63771 -40.61277 -38.87247 -37.88516 -35.16300 -34.65126 -33.40931 -32.12312 -30.83326 -29.47957 -28.73777 -27.83076 -26.66296 -24.79080 -23.65536 -21.59525 -21.11006 -20.73886 -20.00412 -19.25826 -18.43674 -17.56314 -17.31523 -17.14248 -16.91860 -16.80773 -16.64476 -16.28625 -15.75299 -15.54989 -15.04262 -15.01488 -14.90454 -14.75664 -14.58753 -14.08431 -13.89997 -13.57017 -13.51822 -13.33513 -13.01624 -12.92959 -12.71727 -12.65871 -12.56198 -12.40490 -12.12979 -11.89568 -11.88037 -11.85419 -11.58881 -11.42624 -11.22066 -11.15930 -10.98056 -10.75430 -10.49742 -10.34899 -9.42793 -8.98524 -8.50115 -6.20502 0.97405 1.31781 1.44957 1.46959 1.52233 1.65925 1.81512 2.14932 2.25710 2.69779 2.88424 3.42306 3.48671 3.71698 3.75498 3.77782 3.89122 4.01089 4.10418 4.16685 4.18788 4.30006 4.35550 4.41873 4.43293 4.47860 4.58418 4.63577 4.64145 4.69381 4.76227 4.78319 4.84711 4.91490 4.94381 4.98456 5.12890 5.15561 5.27031 5.37403 5.38031 5.41390 5.56380 5.56721 5.72607 6.13478 6.15367 6.38000 6.95707 7.03482 7.15914 8.61780 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.025294 B = 0.002034 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.709760 B =13764.720686 C =14586.466889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.047 3.953 3 Si 0.911 3.089 4 H -0.264 1.264 5 H -0.261 1.261 6 H -0.239 1.239 7 C -0.524 4.524 8 H 0.068 0.932 9 S -0.183 6.183 10 C -0.105 4.105 11 C 0.536 3.464 12 O -0.563 6.563 13 N -0.608 5.608 14 C 0.105 3.895 15 C 0.105 3.895 16 N -0.615 5.615 17 C 0.512 3.488 18 O -0.579 6.579 19 C -0.129 4.129 20 C -0.077 4.077 21 C -0.115 4.115 22 C -0.126 4.126 23 C -0.127 4.127 24 C -0.119 4.119 25 C 0.092 3.908 26 C 0.083 3.917 27 H 0.276 0.724 28 H 0.118 0.882 29 H 0.116 0.884 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.069 0.931 34 H 0.117 0.883 35 H 0.122 0.878 36 H 0.062 0.938 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.061 0.939 40 H 0.072 0.928 41 H 0.053 0.947 42 H 0.066 0.934 43 H 0.045 0.955 44 H 0.066 0.934 45 H 0.080 0.920 46 H 0.137 0.863 47 H 0.095 0.905 48 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.759 -26.695 -3.114 29.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.159 4.159 3 Si 0.733 3.267 4 H -0.188 1.188 5 H -0.185 1.185 6 H -0.163 1.163 7 C -0.671 4.671 8 H 0.086 0.914 9 S 0.044 5.956 10 C -0.256 4.256 11 C 0.323 3.677 12 O -0.441 6.441 13 N -0.342 5.342 14 C -0.018 4.018 15 C -0.019 4.019 16 N -0.348 5.348 17 C 0.303 3.697 18 O -0.458 6.458 19 C -0.168 4.168 20 C -0.096 4.096 21 C -0.153 4.153 22 C -0.163 4.163 23 C -0.165 4.165 24 C -0.156 4.156 25 C -0.030 4.030 26 C -0.039 4.039 27 H 0.086 0.914 28 H 0.136 0.864 29 H 0.134 0.866 30 H 0.098 0.902 31 H 0.106 0.894 32 H 0.115 0.885 33 H 0.087 0.913 34 H 0.135 0.865 35 H 0.140 0.860 36 H 0.081 0.919 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.090 0.910 41 H 0.072 0.928 42 H 0.085 0.915 43 H 0.064 0.936 44 H 0.085 0.915 45 H 0.098 0.902 46 H 0.155 0.845 47 H 0.113 0.887 48 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 13.350 -25.353 -3.113 28.821 hybrid contribution -0.741 0.090 -0.044 0.748 sum 12.608 -25.263 -3.157 28.410 Atomic orbital electron populations 1.70006 1.07154 1.28916 1.49210 1.25507 0.95234 1.02072 0.93083 0.85917 0.80685 0.79985 0.80102 1.18843 1.18532 1.16256 1.22431 0.89970 0.96756 1.57985 0.91427 1.84842 1.06759 1.06431 1.97576 1.23276 0.95384 0.99397 1.07495 1.20115 0.89749 0.82743 0.75055 1.90686 1.59367 1.43401 1.50633 1.48015 1.07576 1.05146 1.73461 1.21933 0.80616 1.00389 0.98900 1.21820 0.95383 0.86764 0.97915 1.48213 1.07846 1.05367 1.73372 1.21405 0.89666 0.84334 0.74280 1.90679 1.18494 1.85193 1.51464 1.21827 0.97751 0.90589 1.06617 1.21918 0.96960 0.93121 0.97589 1.22418 0.98088 0.93171 1.01591 1.22135 0.97656 0.97978 0.98564 1.22144 0.99202 0.95109 1.00042 1.22451 1.00238 0.95881 0.97065 1.22479 0.79557 1.02362 0.98640 1.22571 0.94556 0.86627 1.00171 0.91437 0.86357 0.86616 0.90159 0.89395 0.88524 0.91311 0.86461 0.86012 0.91938 0.89988 0.90826 0.92040 0.90954 0.92784 0.91499 0.93608 0.91490 0.90169 0.84473 0.88682 0.87000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.25 13.97 21.65 0.30 -53.95 16 2 C 0.05 2.66 5.50 84.86 0.47 3.13 16 3 Si 0.91 44.18 27.74 68.60 1.90 46.08 16 4 H -0.26 -12.52 7.11 99.48 0.71 -11.82 16 5 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 6 H -0.24 -11.61 6.74 99.48 0.67 -10.94 16 7 C -0.52 -29.29 10.04 67.95 0.68 -28.60 16 8 H 0.07 3.93 8.03 -2.91 -0.02 3.91 16 9 S -0.18 -8.91 18.55 -56.49 -1.05 -9.96 16 10 C -0.10 -3.64 4.50 71.24 0.32 -3.32 16 11 C 0.54 17.55 7.72 87.66 0.68 18.22 16 12 O -0.56 -23.44 15.27 -3.02 -0.05 -23.48 16 13 N -0.61 -13.89 2.95 -817.24 -2.41 -16.30 16 14 C 0.10 2.24 6.59 86.42 0.57 2.81 16 15 C 0.11 2.01 6.59 86.42 0.57 2.58 16 16 N -0.61 -9.59 2.94 -817.23 -2.40 -11.99 16 17 C 0.51 8.80 7.54 87.66 0.66 9.46 16 18 O -0.58 -14.81 14.27 -3.05 -0.04 -14.85 16 19 C -0.13 -1.19 3.55 29.85 0.11 -1.09 16 20 C -0.08 -0.95 2.46 -9.37 -0.02 -0.98 16 21 C -0.12 -0.96 6.26 31.67 0.20 -0.76 16 22 C -0.13 -1.22 6.80 31.32 0.21 -1.01 16 23 C -0.13 -1.58 6.80 31.32 0.21 -1.37 16 24 C -0.12 -1.75 5.78 31.80 0.18 -1.56 16 25 C 0.09 0.94 6.53 86.55 0.57 1.51 16 26 C 0.08 1.15 6.52 86.55 0.56 1.71 16 27 H 0.28 15.21 8.31 -92.71 -0.77 14.43 16 28 H 0.12 3.62 7.72 -2.40 -0.02 3.60 16 29 H 0.12 3.62 7.91 -2.40 -0.02 3.60 16 30 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.09 2.23 6.99 -2.39 -0.02 2.21 16 32 H 0.10 2.01 6.99 -2.38 -0.02 1.99 16 33 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.12 0.62 7.76 -2.39 -0.02 0.60 16 35 H 0.12 0.53 7.73 -2.39 -0.02 0.52 16 36 H 0.06 1.06 7.88 -2.39 -0.02 1.04 16 37 H 0.08 0.48 8.05 -2.39 -0.02 0.46 16 38 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 43 H 0.05 0.92 7.40 -2.38 -0.02 0.91 16 44 H 0.07 0.88 7.95 -2.38 -0.02 0.86 16 45 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.14 0.39 5.91 -2.38 -0.01 0.38 16 47 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 48 H 0.11 1.42 5.91 -2.38 -0.01 1.41 16 Total: -1.00 -77.04 387.65 3.13 -73.92 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: 0.90 Total: 9.79 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: 5.97 Total: 0.73 kcal Atomic # 7 Polarization: -77.72 SS G_CDS: -4.51 Total: -82.23 kcal Atomic # 8 Polarization: -38.25 SS G_CDS: -0.09 Total: -38.34 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.90 Total: 46.08 kcal Atomic # 16 Polarization: -8.91 SS G_CDS: -1.05 Total: -9.96 kcal Total: -77.04 3.13 -73.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001522427079.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.408 kcal (2) G-P(sol) polarization free energy of solvation -77.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds