Wall clock time and date at job start Tue Mar 31 2020 23:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86795 * 120.00555 * 2 1 4 4 H 1.48508 * 109.47095 * 240.00034 * 3 2 1 5 5 H 1.48499 * 109.46937 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.47368 * 119.99847 * 3 2 1 7 7 C 1.38807 * 119.99696 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00036 * 180.02562 * 7 2 1 9 9 S 1.76201 * 119.99825 * 359.97438 * 7 2 1 10 10 C 1.81002 * 99.99891 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47137 * 180.02562 * 10 9 7 12 12 O 1.21279 * 119.99707 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99993 * 180.02562 * 11 10 9 14 14 C 1.46495 * 119.99907 * 179.97438 * 13 11 10 15 15 H 1.08999 * 112.85074 * 336.20116 * 14 13 11 16 16 C 1.54048 * 113.61827 * 107.50289 * 14 13 11 17 17 C 1.53785 * 86.98663 * 139.98064 * 16 14 13 18 18 H 1.09000 * 113.61757 * 219.99030 * 17 16 14 19 19 N 1.46494 * 113.61451 * 89.15971 * 17 16 14 20 20 C 1.34784 * 119.99635 * 105.86837 * 19 17 16 21 21 O 1.21279 * 119.99925 * 359.97438 * 20 19 17 22 22 C 1.50700 * 119.99961 * 180.02562 * 20 19 17 23 23 C 1.53003 * 109.46986 * 300.00090 * 22 20 19 24 24 C 1.53005 * 109.47219 * 180.02562 * 23 22 20 25 25 C 1.52994 * 109.46906 * 59.99762 * 24 23 22 26 26 C 1.52998 * 109.47366 * 299.99803 * 25 24 23 27 27 C 1.52992 * 109.47257 * 180.02562 * 22 20 19 28 28 C 1.53777 * 113.61400 * 205.00101 * 14 13 11 29 29 H 0.97000 * 119.99461 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.46727 * 60.00214 * 10 9 7 31 31 H 1.08995 * 109.47169 * 300.00409 * 10 9 7 32 32 H 0.96993 * 119.99708 * 0.02562 * 13 11 10 33 33 H 1.09000 * 113.61566 * 25.47968 * 16 14 13 34 34 H 1.08996 * 113.69995 * 254.49465 * 16 14 13 35 35 H 0.96995 * 120.00292 * 286.14270 * 19 17 16 36 36 H 1.08997 * 109.47392 * 59.99562 * 22 20 19 37 37 H 1.09005 * 109.46932 * 299.99942 * 23 22 20 38 38 H 1.08998 * 109.47453 * 59.99968 * 23 22 20 39 39 H 1.09000 * 109.46608 * 299.99989 * 24 23 22 40 40 H 1.08999 * 109.46783 * 179.97438 * 24 23 22 41 41 H 1.09005 * 109.46734 * 180.02562 * 25 24 23 42 42 H 1.08992 * 109.47456 * 60.00368 * 25 24 23 43 43 H 1.09000 * 109.47603 * 300.00663 * 26 25 24 44 44 H 1.08998 * 109.47444 * 180.02562 * 26 25 24 45 45 H 1.09004 * 109.47330 * 299.99977 * 27 22 20 46 46 H 1.09005 * 109.47124 * 59.99773 * 27 22 20 47 47 H 1.09000 * 113.61770 * 105.47588 * 28 14 13 48 48 H 1.09000 * 113.69425 * 334.57757 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.1042 1.6962 -1.2126 5 1 1.2855 2.7464 -0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 16 1.1292 -2.7280 0.0019 10 6 2.5156 -3.8916 0.0013 11 6 1.9871 -5.3029 0.0018 12 8 0.7908 -5.5023 0.0019 13 7 2.8437 -6.3433 0.0020 14 6 2.3299 -7.7152 0.0029 15 1 1.3210 -7.7890 0.4087 16 6 2.5104 -8.4428 -1.3428 17 6 2.8725 -9.6940 -0.5253 18 1 3.6928 -10.2717 -0.9513 19 7 1.7155 -10.5214 -0.1753 20 6 1.5053 -11.6902 -0.8129 21 8 2.2738 -12.0565 -1.6767 22 6 0.3147 -12.5412 -0.4533 23 6 0.3965 -12.9350 1.0229 24 6 -0.8119 -13.7996 1.3879 25 6 -0.8160 -15.0615 0.5229 26 6 -0.8979 -14.6677 -0.9533 27 6 0.3103 -13.8035 -1.3178 28 6 3.3099 -8.7396 0.5986 29 1 -0.4849 0.8401 -0.0004 30 1 3.1249 -3.7311 0.8908 31 1 3.1236 -3.7319 -0.8891 32 1 3.8004 -6.1837 0.0022 33 1 3.3367 -8.0574 -1.9402 34 1 1.5869 -8.5458 -1.9125 35 1 1.0985 -10.2264 0.5125 36 1 -0.6014 -11.9771 -0.6285 37 1 1.3126 -13.4991 1.1982 38 1 0.3999 -12.0359 1.6392 39 1 -1.7282 -13.2358 1.2125 40 1 -0.7533 -14.0804 2.4395 41 1 -1.6772 -15.6772 0.7826 42 1 0.1002 -15.6252 0.6983 43 1 -1.8141 -14.1040 -1.1287 44 1 -0.9013 -15.5668 -1.5695 45 1 0.2522 -13.5233 -2.3696 46 1 1.2264 -14.3674 -1.1421 47 1 3.0314 -9.0821 1.5952 48 1 4.3548 -8.4364 0.5319 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001524850477.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:23 Heat of formation + Delta-G solvation = -108.410106 kcal Electronic energy + Delta-G solvation = -26382.825083 eV Core-core repulsion = 22562.081585 eV Total energy + Delta-G solvation = -3820.743497 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.68048 -40.74175 -39.38893 -38.24998 -35.24853 -34.58057 -33.69906 -31.85815 -31.59223 -30.57585 -27.68010 -26.75795 -25.81631 -24.27868 -23.44048 -21.94203 -21.59972 -20.71111 -20.56801 -19.76434 -18.33104 -17.81401 -17.56644 -16.95457 -16.87366 -16.49469 -16.33062 -15.97924 -15.84046 -15.26509 -15.02399 -14.93013 -14.77762 -14.55199 -14.51741 -13.96174 -13.64941 -13.51067 -13.38721 -13.29673 -13.16690 -13.12749 -12.98078 -12.86370 -12.60662 -12.23359 -12.04385 -11.91666 -11.79480 -11.62130 -11.51798 -11.34876 -11.12582 -11.01303 -10.92171 -10.67595 -10.27529 -10.16930 -9.95720 -8.66154 -8.34328 -6.12311 1.27838 1.44128 1.47604 1.57096 1.57470 1.61577 2.12416 2.27130 2.33598 2.99791 3.32339 3.39629 3.54261 3.59697 3.74067 3.78806 3.88762 3.97190 4.04744 4.22317 4.27821 4.32213 4.32601 4.46549 4.51832 4.54868 4.58095 4.59860 4.70857 4.71833 4.79607 4.87768 4.96907 4.99162 5.02873 5.12502 5.16653 5.24742 5.25592 5.36414 5.39489 5.41894 5.44709 5.55602 5.63433 6.19833 6.49434 6.54528 7.06969 7.21415 7.26822 8.74564 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026850 B = 0.001667 C = 0.001619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.593005 B =16789.596620 C =17288.563328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.998 3.002 4 H -0.263 1.263 5 H -0.279 1.279 6 H -0.261 1.261 7 C -0.548 4.548 8 H 0.083 0.917 9 S -0.152 6.152 10 C -0.131 4.131 11 C 0.534 3.466 12 O -0.566 6.566 13 N -0.701 5.701 14 C 0.116 3.884 15 H 0.097 0.903 16 C -0.165 4.165 17 C 0.125 3.875 18 H 0.102 0.898 19 N -0.705 5.705 20 C 0.518 3.482 21 O -0.581 6.581 22 C -0.103 4.103 23 C -0.106 4.106 24 C -0.117 4.117 25 C -0.122 4.122 26 C -0.117 4.117 27 C -0.097 4.097 28 C -0.126 4.126 29 H 0.271 0.729 30 H 0.111 0.889 31 H 0.108 0.892 32 H 0.418 0.582 33 H 0.102 0.898 34 H 0.053 0.947 35 H 0.413 0.587 36 H 0.109 0.891 37 H 0.062 0.938 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.059 0.941 43 H 0.068 0.932 44 H 0.067 0.933 45 H 0.052 0.948 46 H 0.056 0.944 47 H 0.096 0.904 48 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.726 -29.560 3.684 30.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.696 4.696 8 H 0.101 0.899 9 S 0.075 5.925 10 C -0.282 4.282 11 C 0.320 3.680 12 O -0.444 6.444 13 N -0.354 5.354 14 C 0.011 3.989 15 H 0.115 0.885 16 C -0.205 4.205 17 C 0.019 3.981 18 H 0.120 0.880 19 N -0.356 5.356 20 C 0.306 3.694 21 O -0.461 6.461 22 C -0.124 4.124 23 C -0.144 4.144 24 C -0.155 4.155 25 C -0.159 4.159 26 C -0.155 4.155 27 C -0.136 4.136 28 C -0.165 4.165 29 H 0.080 0.920 30 H 0.129 0.871 31 H 0.126 0.874 32 H 0.256 0.744 33 H 0.121 0.879 34 H 0.072 0.928 35 H 0.250 0.750 36 H 0.127 0.873 37 H 0.080 0.920 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.078 0.922 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.071 0.929 46 H 0.074 0.926 47 H 0.115 0.885 48 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 4.148 -30.065 3.090 30.506 hybrid contribution 1.592 1.657 -0.110 2.301 sum 5.740 -28.407 2.981 29.134 Atomic orbital electron populations 1.70178 1.07965 1.28654 1.47942 1.26124 0.95959 1.03306 0.93730 0.85010 0.77808 0.75732 0.79489 1.18749 1.20438 1.18589 1.23185 0.95365 0.92067 1.58967 0.89895 1.85560 1.10647 0.99233 1.97059 1.23395 1.03530 0.94529 1.06795 1.20094 0.86349 0.86761 0.74749 1.90682 1.17457 1.86088 1.50197 1.45726 1.10151 1.04623 1.74927 1.22719 0.99424 0.79526 0.97212 0.88531 1.24023 1.02581 0.96403 0.97482 1.21609 0.89254 0.90335 0.96946 0.88047 1.45728 1.28236 1.20605 1.41038 1.21206 0.86819 0.81192 0.80196 1.90677 1.48944 1.72965 1.33506 1.21406 0.96116 0.96370 0.98521 1.21530 0.99662 1.00989 0.92195 1.21540 0.97770 0.96101 1.00065 1.21573 1.02241 0.97706 0.94413 1.21538 0.97443 0.99505 0.96967 1.21294 0.99094 0.94735 0.98433 1.23658 1.01099 0.92773 0.98954 0.92008 0.87056 0.87370 0.74427 0.87924 0.92776 0.75010 0.87256 0.91965 0.90056 0.91146 0.90629 0.90993 0.92224 0.91364 0.91388 0.92929 0.92560 0.88502 0.85820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.72 13.22 21.65 0.29 -55.43 16 2 C 0.01 0.77 5.49 84.86 0.47 1.24 16 3 Si 1.00 43.22 29.55 68.60 2.03 45.25 16 4 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 5 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 6 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 7 C -0.55 -31.04 9.50 67.96 0.65 -30.40 16 8 H 0.08 4.34 7.80 -2.91 -0.02 4.31 16 9 S -0.15 -8.35 20.57 -56.49 -1.16 -9.52 16 10 C -0.13 -5.03 6.16 71.24 0.44 -4.60 16 11 C 0.53 18.79 7.85 87.66 0.69 19.48 16 12 O -0.57 -25.33 15.46 -3.03 -0.05 -25.38 16 13 N -0.70 -15.86 5.36 -439.62 -2.35 -18.22 16 14 C 0.12 2.25 4.13 45.61 0.19 2.44 16 15 H 0.10 2.27 7.46 -2.39 -0.02 2.25 16 16 C -0.16 -3.15 7.70 31.21 0.24 -2.91 16 17 C 0.12 1.93 4.30 45.52 0.20 2.12 16 18 H 0.10 1.77 7.50 -2.39 -0.02 1.75 16 19 N -0.70 -10.49 5.15 -440.02 -2.27 -12.76 16 20 C 0.52 9.82 7.15 87.66 0.63 10.45 16 21 O -0.58 -15.92 15.60 -3.03 -0.05 -15.97 16 22 C -0.10 -1.38 2.53 -11.54 -0.03 -1.41 16 23 C -0.11 -1.00 5.10 30.60 0.16 -0.85 16 24 C -0.12 -0.93 5.92 30.59 0.18 -0.74 16 25 C -0.12 -1.07 5.92 30.59 0.18 -0.89 16 26 C -0.12 -1.25 5.92 30.58 0.18 -1.07 16 27 C -0.10 -1.47 4.49 30.58 0.14 -1.33 16 28 C -0.13 -1.43 7.57 31.12 0.24 -1.19 16 29 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 30 H 0.11 3.79 8.14 -2.40 -0.02 3.77 16 31 H 0.11 3.75 8.14 -2.40 -0.02 3.73 16 32 H 0.42 6.42 8.73 -92.71 -0.81 5.61 16 33 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.41 4.42 8.13 -92.71 -0.75 3.67 16 36 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 38 H 0.08 0.56 7.57 -2.39 -0.02 0.54 16 39 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 42 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.05 0.95 8.10 -2.38 -0.02 0.93 16 46 H 0.06 0.98 8.10 -2.38 -0.02 0.96 16 47 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 48 H 0.12 0.92 8.12 -2.39 -0.02 0.90 16 Total: -1.00 -81.05 401.64 0.37 -80.69 By element: Atomic # 1 Polarization: 21.60 SS G_CDS: -0.60 Total: 21.00 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: 4.53 Total: -9.66 kcal Atomic # 7 Polarization: -82.08 SS G_CDS: -4.34 Total: -86.41 kcal Atomic # 8 Polarization: -41.25 SS G_CDS: -0.09 Total: -41.34 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: -8.35 SS G_CDS: -1.16 Total: -9.52 kcal Total: -81.05 0.37 -80.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001524850477.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.725 kcal (2) G-P(sol) polarization free energy of solvation -81.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds