Wall clock time and date at job start Tue Mar 31 2020 23:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86794 * 120.00003 * 2 1 4 4 H 1.48501 * 109.46853 * 239.99831 * 3 2 1 5 5 H 1.48497 * 109.47239 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46948 * 119.99846 * 3 2 1 7 7 C 1.38796 * 119.99669 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00155 * 179.97438 * 7 2 1 9 9 S 1.76201 * 120.00326 * 0.02562 * 7 2 1 10 10 C 1.80997 * 100.00032 * 179.97438 * 9 7 2 11 11 C 1.50709 * 109.46962 * 180.02562 * 10 9 7 12 12 O 1.21277 * 119.99859 * 0.02562 * 11 10 9 13 13 N 1.34772 * 119.99624 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99750 * 180.02562 * 13 11 10 15 15 H 1.08999 * 110.01789 * 34.92965 * 14 13 11 16 16 C 1.54268 * 110.02791 * 273.54161 * 14 13 11 17 17 C 1.54889 * 104.19728 * 217.05512 * 16 14 13 18 18 C 1.54897 * 102.74591 * 37.94393 * 17 16 14 19 19 C 1.53873 * 110.07437 * 156.35468 * 14 13 11 20 20 H 1.09005 * 110.03108 * 238.58288 * 19 14 13 21 21 C 1.52994 * 110.03450 * 0.02562 * 19 14 13 22 22 N 1.46501 * 109.47511 * 183.62220 * 21 19 14 23 23 C 1.34771 * 120.00355 * 179.97438 * 22 21 19 24 24 O 1.21284 * 120.00114 * 0.02562 * 23 22 21 25 25 C 1.50694 * 120.00258 * 180.02562 * 23 22 21 26 26 C 1.53002 * 109.47617 * 180.02562 * 25 23 22 27 27 C 1.52996 * 117.50084 * 243.62509 * 26 25 23 28 28 C 1.52993 * 60.00023 * 252.50565 * 27 26 25 29 29 H 0.97003 * 119.99811 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.47061 * 60.00159 * 10 9 7 31 31 H 1.09001 * 109.47506 * 300.00099 * 10 9 7 32 32 H 0.97002 * 120.00799 * 359.97438 * 13 11 10 33 33 H 1.08998 * 110.48695 * 98.37769 * 16 14 13 34 34 H 1.08999 * 110.48827 * 335.73328 * 16 14 13 35 35 H 1.09000 * 110.75622 * 279.63120 * 17 16 14 36 36 H 1.09002 * 110.76161 * 156.25634 * 17 16 14 37 37 H 1.08998 * 110.48266 * 80.73866 * 18 17 16 38 38 H 1.09000 * 110.48216 * 203.37721 * 18 17 16 39 39 H 1.09000 * 109.46958 * 303.62375 * 21 19 14 40 40 H 1.08998 * 109.47244 * 63.62359 * 21 19 14 41 41 H 0.97001 * 119.99763 * 0.02562 * 22 21 19 42 42 H 1.09000 * 109.47131 * 300.00087 * 25 23 22 43 43 H 1.09008 * 109.47333 * 60.00059 * 25 23 22 44 44 H 1.08999 * 115.54579 * 29.32532 * 26 25 23 45 45 H 1.09004 * 117.49840 * 0.02562 * 27 26 25 46 46 H 1.08996 * 117.50150 * 145.01544 * 27 26 25 47 47 H 1.08999 * 117.50181 * 252.50771 * 28 27 26 48 48 H 1.09004 * 117.50176 * 107.48741 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1292 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9872 -5.3028 -0.0001 12 8 0.7910 -5.5023 -0.0010 13 7 2.8440 -6.3431 0.0003 14 6 2.3302 -7.7151 -0.0009 15 1 1.4137 -7.7698 -0.5883 16 6 2.0596 -8.1792 1.4452 17 6 2.4679 -9.6732 1.4475 18 6 3.7192 -9.6869 0.5345 19 6 3.3854 -8.6737 -0.5799 20 1 2.9810 -9.1938 -1.4483 21 6 4.6420 -7.8945 -0.9729 22 7 5.6039 -8.8034 -1.6013 23 6 6.7919 -8.3348 -2.0318 24 8 7.0650 -7.1607 -1.8987 25 6 7.7810 -9.2697 -2.6787 26 6 9.0377 -8.4905 -3.0717 27 6 9.3751 -8.3987 -4.5612 28 6 10.2139 -9.2868 -3.6401 29 1 -0.4850 0.8401 -0.0004 30 1 3.1244 -3.7314 0.8905 31 1 3.1244 -3.7314 -0.8894 32 1 3.8008 -6.1836 0.0006 33 1 1.0025 -8.0723 1.6887 34 1 2.6727 -7.6151 2.1480 35 1 1.6752 -10.2910 1.0256 36 1 2.7213 -10.0030 2.4550 37 1 4.6003 -9.3663 1.0903 38 1 3.8732 -10.6804 0.1133 39 1 4.3751 -7.1053 -1.6759 40 1 5.0886 -7.4520 -0.0825 41 1 5.3853 -9.7424 -1.7082 42 1 8.0482 -10.0589 -1.9760 43 1 7.3341 -9.7121 -3.5692 44 1 9.2690 -7.6265 -2.4488 45 1 8.7016 -8.8931 -5.2612 46 1 9.8285 -7.4741 -4.9185 47 1 11.2192 -8.9466 -3.3914 48 1 10.0926 -10.3660 -3.7341 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001533074168.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:28 Heat of formation + Delta-G solvation = -63.464502 kcal Electronic energy + Delta-G solvation = -26727.784333 eV Core-core repulsion = 22908.989824 eV Total energy + Delta-G solvation = -3818.794509 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.51614 -39.66855 -38.01598 -37.33930 -34.82168 -33.54922 -32.39143 -31.01318 -29.69473 -29.13890 -27.09531 -25.43053 -24.93871 -22.74812 -21.86770 -21.05351 -20.79347 -20.27821 -19.59670 -17.90884 -17.56567 -16.85049 -16.20526 -16.01301 -15.88080 -15.49544 -15.26826 -14.88989 -14.76890 -14.51703 -14.41468 -13.99450 -13.83721 -13.70609 -13.17234 -13.02274 -12.64499 -12.50870 -12.31490 -11.89186 -11.85741 -11.80392 -11.57147 -11.32443 -11.21851 -11.01577 -11.00578 -10.99696 -10.84679 -10.74858 -10.73025 -10.42572 -10.06297 -9.78750 -9.41033 -9.36557 -9.02713 -8.86087 -8.20763 -6.46245 -6.18108 -3.88354 2.37017 2.75559 3.07419 3.11097 3.26985 3.30418 3.34711 3.43909 3.73867 4.14847 4.24313 4.25537 4.27451 4.37436 4.39905 4.53179 4.72677 4.93839 4.97958 4.99452 5.07977 5.13075 5.15504 5.16981 5.19466 5.23162 5.26885 5.34691 5.39335 5.44308 5.53360 5.58085 5.60433 5.68729 5.73986 5.75761 5.91992 5.93017 5.96960 6.05760 6.08001 6.16504 6.20237 6.68032 7.14938 7.63373 7.70199 7.93622 8.39107 8.63447 9.27286 10.89259 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009037 B = 0.002519 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3097.611032 B =11113.575737 C =13877.498878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.155 4.155 11 C 0.533 3.467 12 O -0.517 6.517 13 N -0.739 5.739 14 C 0.152 3.848 15 H 0.095 0.905 16 C -0.136 4.136 17 C -0.123 4.123 18 C -0.120 4.120 19 C -0.111 4.111 20 H 0.089 0.911 21 C 0.119 3.881 22 N -0.730 5.730 23 C 0.512 3.488 24 O -0.532 6.532 25 C -0.110 4.110 26 C -0.142 4.142 27 C -0.178 4.178 28 C -0.181 4.181 29 H 0.268 0.732 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.399 0.601 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.400 0.600 42 H 0.097 0.903 43 H 0.094 0.906 44 H 0.119 0.881 45 H 0.093 0.907 46 H 0.095 0.905 47 H 0.095 0.905 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.895 -26.941 -3.422 31.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.683 4.683 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.306 4.306 11 C 0.320 3.680 12 O -0.391 6.391 13 N -0.395 5.395 14 C 0.046 3.954 15 H 0.113 0.887 16 C -0.175 4.175 17 C -0.161 4.161 18 C -0.157 4.157 19 C -0.130 4.130 20 H 0.107 0.893 21 C -0.005 4.005 22 N -0.383 5.383 23 C 0.298 3.702 24 O -0.408 6.408 25 C -0.149 4.149 26 C -0.161 4.161 27 C -0.215 4.215 28 C -0.218 4.218 29 H 0.078 0.922 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.236 0.764 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.234 0.766 42 H 0.115 0.885 43 H 0.112 0.888 44 H 0.137 0.863 45 H 0.112 0.888 46 H 0.114 0.886 47 H 0.114 0.886 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 13.916 -26.275 -3.332 29.919 hybrid contribution 2.286 0.899 -0.078 2.458 sum 16.202 -25.377 -3.411 30.301 Atomic orbital electron populations 1.70013 1.05930 1.27510 1.46930 1.24987 0.95034 0.99008 0.94558 0.86225 0.79230 0.81226 0.78841 1.19923 1.20833 1.19937 1.22838 0.94914 0.91675 1.58895 0.90966 1.85338 1.04937 0.96300 1.96724 1.23549 1.06570 0.95438 1.04999 1.20326 0.86554 0.86339 0.74811 1.90689 1.15341 1.85593 1.47444 1.46395 1.10148 1.05193 1.77795 1.21477 0.96706 0.80589 0.96605 0.88733 1.22829 1.02600 0.95441 0.96607 1.22458 0.97273 0.96628 0.99734 1.22475 0.98744 0.98327 0.96192 1.22292 0.94750 0.96635 0.99362 0.89289 1.21486 0.88014 0.92824 0.98152 1.45993 1.17119 1.12814 1.62355 1.20621 0.82201 0.89228 0.78152 1.90744 1.77011 1.17522 1.55509 1.21216 0.94056 0.97902 1.01767 1.22062 0.94665 1.01977 0.97379 1.23040 1.03599 1.01999 0.92856 1.23000 0.96039 0.98111 1.04635 0.92175 0.89238 0.89200 0.76359 0.90639 0.90948 0.91186 0.91262 0.91095 0.91388 0.90516 0.91084 0.76637 0.88499 0.88800 0.86308 0.88830 0.88638 0.88640 0.88806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.55 13.22 55.49 0.73 -25.81 16 2 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 3 Si 0.92 21.88 29.55 -169.99 -5.02 16.85 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.53 -15.57 9.50 30.94 0.29 -15.28 16 8 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.15 -3.24 6.16 36.01 0.22 -3.01 16 11 C 0.53 10.04 7.84 -10.98 -0.09 9.95 16 12 O -0.52 -11.63 15.54 5.56 0.09 -11.54 16 13 N -0.74 -9.95 4.45 -52.72 -0.23 -10.18 16 14 C 0.15 1.68 3.20 -66.81 -0.21 1.47 16 15 H 0.09 1.22 7.61 -51.93 -0.39 0.82 16 16 C -0.14 -1.41 6.52 -25.07 -0.16 -1.57 16 17 C -0.12 -0.88 6.91 -24.73 -0.17 -1.05 16 18 C -0.12 -0.71 6.01 -25.07 -0.15 -0.86 16 19 C -0.11 -0.83 2.98 -89.51 -0.27 -1.09 16 20 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 21 C 0.12 1.03 3.59 -4.04 -0.01 1.01 16 22 N -0.73 -5.06 5.38 -60.30 -0.32 -5.39 16 23 C 0.51 4.73 7.83 -10.99 -0.09 4.64 16 24 O -0.53 -7.46 15.56 5.55 0.09 -7.37 16 25 C -0.11 -0.65 5.98 -27.88 -0.17 -0.82 16 26 C -0.14 -1.09 5.41 -90.62 -0.49 -1.58 16 27 C -0.18 -1.23 10.18 -26.74 -0.27 -1.50 16 28 C -0.18 -1.06 10.25 -26.74 -0.27 -1.33 16 29 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 30 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 31 H 0.09 1.77 8.14 -51.92 -0.42 1.35 16 32 H 0.40 4.68 5.82 -40.82 -0.24 4.44 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.07 0.80 8.05 -51.93 -0.42 0.38 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.45 7.78 -51.93 -0.40 0.05 16 38 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.08 0.83 7.49 -51.93 -0.39 0.44 16 40 H 0.07 0.67 7.07 -51.93 -0.37 0.30 16 41 H 0.40 1.55 8.31 -40.82 -0.34 1.21 16 42 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.09 0.40 7.88 -51.92 -0.41 0.00 16 44 H 0.12 1.17 7.31 -51.93 -0.38 0.80 16 45 H 0.09 0.56 8.03 -51.93 -0.42 0.15 16 46 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 48 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 404.48 15.07 6.10 6.10 Total: -1.00 -36.65 404.48 -10.68 -47.33 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -7.95 Total: 2.88 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: -1.94 Total: -9.00 kcal Atomic # 7 Polarization: -41.56 SS G_CDS: 0.17 Total: -41.38 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: 0.17 Total: -18.92 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -36.65 -10.68 -47.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001533074168.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.135 kcal (2) G-P(sol) polarization free energy of solvation -36.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds