Wall clock time and date at job start Tue Mar 31 2020 23:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48502 * 109.47448 * 270.00036 * 3 2 1 5 5 H 1.48501 * 109.47175 * 30.00246 * 3 2 1 6 6 H 1.48506 * 109.47415 * 150.00212 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38106 * 119.92542 * 179.72264 * 11 10 9 13 13 C 1.38301 * 120.06995 * 0.57427 * 12 11 10 14 14 C 1.50698 * 119.92966 * 179.70327 * 13 12 11 15 15 C 1.50705 * 109.46930 * 269.97807 * 14 13 12 16 16 O 1.21282 * 120.00171 * 359.97438 * 15 14 13 17 17 N 1.34781 * 119.99728 * 180.02562 * 15 14 13 18 18 C 1.46507 * 119.99539 * 180.02562 * 17 15 14 19 19 C 1.50703 * 109.46711 * 179.97438 * 18 17 15 20 20 C 1.38237 * 119.99404 * 269.72358 * 19 18 17 21 21 C 1.38235 * 119.99403 * 179.76799 * 20 19 18 22 22 C 1.38237 * 120.00467 * 0.48610 * 21 20 19 23 23 C 1.50698 * 120.00265 * 179.76762 * 22 21 20 24 24 N 1.46896 * 109.47175 * 270.02038 * 23 22 21 25 25 C 1.38242 * 119.99643 * 359.78784 * 22 21 20 26 26 C 1.38230 * 120.00103 * 89.99687 * 19 18 17 27 27 C 1.38297 * 120.13831 * 359.68148 * 13 12 11 28 28 C 1.38101 * 120.07230 * 0.04164 * 27 13 12 29 29 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 30 30 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 31 31 H 1.07997 * 119.96326 * 180.27708 * 12 11 10 32 32 H 1.09003 * 109.47622 * 29.97563 * 14 13 12 33 33 H 1.09004 * 109.47221 * 149.98114 * 14 13 12 34 34 H 0.96995 * 120.00416 * 359.97438 * 17 15 14 35 35 H 1.08997 * 109.47000 * 299.99470 * 18 17 15 36 36 H 1.08995 * 109.47404 * 59.99675 * 18 17 15 37 37 H 1.07999 * 120.00652 * 359.97438 * 20 19 18 38 38 H 1.08001 * 120.00157 * 180.24602 * 21 20 19 39 39 H 1.09002 * 109.47157 * 30.02287 * 23 22 21 40 40 H 1.09005 * 109.46709 * 150.02335 * 23 22 21 41 41 H 1.00900 * 111.00305 * 56.04193 * 24 23 22 42 42 H 1.00895 * 110.99997 * 180.02562 * 24 23 22 43 43 H 1.07995 * 119.99900 * 179.97438 * 25 22 21 44 44 H 1.07997 * 120.00214 * 0.02562 * 26 19 18 45 45 H 1.07999 * 119.96698 * 180.02562 * 27 13 12 46 46 H 1.07992 * 120.03608 * 179.97438 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4971 2.0465 -1.4001 5 1 1.4470 2.6526 0.7001 6 1 3.5472 1.4402 0.7000 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8884 -0.3387 13 6 3.5686 -5.8202 -0.3255 14 6 4.3848 -7.0815 -0.4440 15 6 4.6506 -7.6388 0.9308 16 8 4.2200 -7.0678 1.9103 17 7 5.3676 -8.7713 1.0717 18 6 5.6255 -9.3134 2.4082 19 6 6.4418 -10.5746 2.2897 20 6 5.8098 -11.7986 2.1737 21 6 6.5585 -12.9550 2.0602 22 6 7.9393 -12.8885 2.0728 23 6 8.7555 -14.1498 1.9543 24 7 9.0141 -14.6934 3.2943 25 6 8.5712 -11.6651 2.1945 26 6 7.8225 -10.5081 2.3028 27 6 4.2024 -4.5970 -0.2043 28 6 3.4573 -3.4394 -0.0951 29 1 -0.4850 0.8400 0.0004 30 1 0.3579 -4.7892 -0.2301 31 1 1.6954 -6.8451 -0.4339 32 1 3.8358 -7.8156 -1.0337 33 1 5.3321 -6.8566 -0.9342 34 1 5.7123 -9.2278 0.2884 35 1 6.1740 -8.5793 2.9984 36 1 4.6782 -9.5388 2.8979 37 1 4.7311 -11.8510 2.1683 38 1 6.0649 -13.9109 1.9655 39 1 8.2066 -14.8837 1.3642 40 1 9.7029 -13.9247 1.4645 41 1 8.1515 -14.8499 3.7937 42 1 9.5606 -15.5399 3.2418 43 1 9.6499 -11.6132 2.2048 44 1 8.3162 -9.5524 2.3983 45 1 5.2812 -4.5470 -0.1947 46 1 3.9527 -2.4846 0.0000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580052467.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:48 Heat of formation + Delta-G solvation = -19.180311 kcal Electronic energy + Delta-G solvation = -26816.447453 eV Core-core repulsion = 22864.129299 eV Total energy + Delta-G solvation = -3952.318154 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.20752 -39.50775 -38.69002 -36.54184 -35.87974 -34.33003 -32.44435 -31.71110 -31.35180 -30.87408 -30.08595 -27.61741 -26.18293 -25.04322 -23.86449 -23.14662 -21.91044 -21.20765 -20.99807 -20.02892 -17.92278 -17.43806 -16.93271 -16.84680 -16.29205 -16.09346 -15.52240 -15.29696 -15.22289 -14.81671 -14.54716 -14.40245 -14.19498 -13.83629 -13.71272 -13.46942 -13.38533 -13.32458 -12.95059 -12.84314 -12.63739 -12.47523 -12.31333 -11.77765 -11.48889 -11.43348 -11.36303 -11.21896 -10.79397 -10.70773 -10.56817 -10.38347 -9.81716 -9.38450 -9.30255 -9.27143 -9.12710 -9.02772 -8.76669 -8.08542 -7.10107 -6.39686 -3.98116 0.77916 1.00673 2.31248 2.33101 2.81396 3.08141 3.17040 3.17342 3.22100 3.56115 4.01476 4.13602 4.24895 4.37777 4.44416 4.60427 4.62025 4.71476 5.01244 5.02670 5.07385 5.14282 5.16598 5.28813 5.31896 5.35547 5.39411 5.51345 5.64584 5.66969 5.72408 5.79451 5.91255 5.94936 6.14854 6.21294 6.27928 6.33824 6.47381 6.48237 6.57569 6.76737 6.82911 6.97945 7.11466 7.30084 7.43387 7.48455 7.52028 7.90521 8.05792 8.35740 9.06105 9.77304 10.78554 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.034223 B = 0.001537 C = 0.001504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.968412 B =18215.994263 C =18611.144222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.391 4.391 8 H 0.092 0.908 9 O -0.179 6.179 10 C 0.156 3.844 11 C -0.192 4.192 12 C -0.060 4.060 13 C -0.170 4.170 14 C -0.079 4.079 15 C 0.508 3.492 16 O -0.520 6.520 17 N -0.737 5.737 18 C 0.160 3.840 19 C -0.102 4.102 20 C -0.100 4.100 21 C -0.117 4.117 22 C -0.082 4.082 23 C 0.100 3.900 24 N -0.846 5.846 25 C -0.100 4.100 26 C -0.101 4.101 27 C -0.056 4.056 28 C -0.232 4.232 29 H 0.269 0.731 30 H 0.116 0.884 31 H 0.108 0.892 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.399 0.601 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.125 0.875 38 H 0.120 0.880 39 H 0.036 0.964 40 H 0.081 0.919 41 H 0.343 0.657 42 H 0.344 0.656 43 H 0.124 0.876 44 H 0.125 0.875 45 H 0.103 0.897 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.208 -28.437 0.976 33.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.467 4.467 8 H 0.109 0.891 9 O -0.082 6.082 10 C 0.103 3.897 11 C -0.211 4.211 12 C -0.078 4.078 13 C -0.171 4.171 14 C -0.119 4.119 15 C 0.295 3.705 16 O -0.394 6.394 17 N -0.391 5.391 18 C 0.037 3.963 19 C -0.103 4.103 20 C -0.119 4.119 21 C -0.136 4.136 22 C -0.083 4.083 23 C -0.030 4.030 24 N -0.377 5.377 25 C -0.118 4.118 26 C -0.119 4.119 27 C -0.075 4.075 28 C -0.252 4.252 29 H 0.079 0.921 30 H 0.134 0.866 31 H 0.126 0.874 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.232 0.768 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.143 0.857 38 H 0.138 0.862 39 H 0.054 0.946 40 H 0.099 0.901 41 H 0.156 0.844 42 H 0.157 0.843 43 H 0.142 0.858 44 H 0.143 0.857 45 H 0.122 0.878 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 16.832 -27.088 1.867 31.946 hybrid contribution 0.180 -0.312 -0.603 0.703 sum 17.012 -27.400 1.264 32.277 Atomic orbital electron populations 1.70040 1.05943 1.27572 1.46326 1.25279 0.95829 0.98783 0.96632 0.85719 0.78946 0.80149 0.78650 1.19913 1.20286 1.19216 1.21331 0.91804 0.80869 1.52707 0.89095 1.83975 1.34354 1.11460 1.78449 1.19389 0.90292 0.88022 0.92012 1.20151 0.99469 0.90344 1.11130 1.20397 0.92770 0.96588 0.98046 1.18638 0.93224 0.92572 1.12707 1.20401 1.01250 0.96824 0.93408 1.21100 0.77286 0.79618 0.92485 1.90753 1.49400 1.58517 1.40695 1.46157 1.57070 1.27416 1.08471 1.20138 0.98931 0.91796 0.85451 1.19944 0.94002 0.94654 1.01702 1.21081 1.00059 0.91792 0.98941 1.21020 0.93297 0.98352 1.00899 1.19812 0.93559 0.94899 0.99997 1.20715 0.98898 0.92967 0.90452 1.58687 1.25090 1.36512 1.17377 1.21022 0.99995 0.91671 0.99139 1.21143 0.93199 0.98706 0.98873 1.20504 0.98034 0.91829 0.97107 1.21104 0.93802 0.98816 1.11443 0.92089 0.86561 0.87403 0.88996 0.89018 0.76764 0.90735 0.90777 0.85727 0.86248 0.94578 0.90098 0.84445 0.84324 0.85796 0.85653 0.87841 0.85599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.85 13.67 55.48 0.76 -25.09 16 2 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 3 Si 0.94 20.99 29.55 -169.99 -5.02 15.97 16 4 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 7 C -0.39 -11.25 9.49 30.89 0.29 -10.95 16 8 H 0.09 2.43 5.20 -52.49 -0.27 2.15 16 9 O -0.18 -5.29 9.76 0.05 0.00 -5.29 16 10 C 0.16 3.97 6.65 -39.11 -0.26 3.71 16 11 C -0.19 -4.28 9.99 -39.39 -0.39 -4.67 16 12 C -0.06 -1.13 9.69 -39.61 -0.38 -1.51 16 13 C -0.17 -3.03 4.38 -104.58 -0.46 -3.49 16 14 C -0.08 -1.00 5.83 -29.03 -0.17 -1.17 16 15 C 0.51 7.05 7.82 -10.98 -0.09 6.97 16 16 O -0.52 -9.89 16.03 5.56 0.09 -9.80 16 17 N -0.74 -7.30 5.55 -61.47 -0.34 -7.64 16 18 C 0.16 1.55 5.80 -5.19 -0.03 1.52 16 19 C -0.10 -0.82 5.25 -104.62 -0.55 -1.37 16 20 C -0.10 -0.73 9.70 -39.58 -0.38 -1.11 16 21 C -0.12 -0.76 9.70 -39.58 -0.38 -1.14 16 22 C -0.08 -0.54 5.39 -104.62 -0.56 -1.10 16 23 C 0.10 0.49 6.91 -4.98 -0.03 0.46 16 24 N -0.85 -4.04 9.61 -11.41 -0.11 -4.15 16 25 C -0.10 -0.71 9.70 -39.58 -0.38 -1.09 16 26 C -0.10 -0.76 9.70 -39.58 -0.38 -1.15 16 27 C -0.06 -1.09 9.69 -39.61 -0.38 -1.48 16 28 C -0.23 -5.32 9.17 -39.39 -0.36 -5.68 16 29 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.12 2.49 8.06 -52.49 -0.42 2.07 16 31 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 32 H 0.09 0.93 8.08 -51.93 -0.42 0.51 16 33 H 0.09 0.94 8.08 -51.93 -0.42 0.52 16 34 H 0.40 2.89 8.46 -40.82 -0.35 2.54 16 35 H 0.07 0.79 8.09 -51.93 -0.42 0.37 16 36 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16 37 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 38 H 0.12 0.57 8.06 -52.49 -0.42 0.15 16 39 H 0.04 0.15 8.09 -51.93 -0.42 -0.27 16 40 H 0.08 0.37 8.09 -51.93 -0.42 -0.05 16 41 H 0.34 1.47 8.99 -39.29 -0.35 1.11 16 42 H 0.34 1.00 9.08 -39.29 -0.36 0.65 16 43 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 44 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 45 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 46 H 0.13 2.87 5.64 -52.49 -0.30 2.57 16 LS Contribution 396.45 15.07 5.97 5.97 Total: -1.00 -35.50 396.45 -9.90 -45.40 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -6.24 Total: 6.90 kcal Atomic # 6 Polarization: -17.25 SS G_CDS: -5.01 Total: -22.26 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: 0.31 Total: -36.89 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: 0.09 Total: -15.10 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.50 -9.90 -45.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580052467.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.219 kcal (2) G-P(sol) polarization free energy of solvation -35.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds