Wall clock time and date at job start Tue Mar 31 2020 23:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86802 * 119.99788 * 2 1 4 4 H 1.48500 * 109.46885 * 269.99326 * 3 2 1 5 5 H 1.48494 * 109.47608 * 29.99564 * 3 2 1 6 6 H 1.48499 * 109.47042 * 149.99975 * 3 2 1 7 7 C 1.38790 * 119.99827 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00605 * 0.02562 * 7 2 1 9 9 S 1.76205 * 120.00050 * 180.02562 * 7 2 1 10 10 C 1.80999 * 100.00158 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47194 * 180.02562 * 10 9 7 12 12 O 1.21281 * 120.00078 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00157 * 180.02562 * 11 10 9 14 14 C 1.47422 * 125.64926 * 5.12340 * 13 11 10 15 15 C 1.54907 * 104.83478 * 155.84200 * 14 13 11 16 16 C 1.55159 * 101.58313 * 37.00774 * 15 14 13 17 17 C 1.47019 * 125.64958 * 185.08953 * 13 11 10 18 18 H 1.09007 * 109.87799 * 300.66074 * 17 13 11 19 19 C 1.52998 * 109.88754 * 61.67170 * 17 13 11 20 20 N 1.46493 * 109.47501 * 185.40370 * 19 17 13 21 21 C 1.34778 * 120.00118 * 175.02751 * 20 19 17 22 22 O 1.21281 * 120.00067 * 0.02562 * 21 20 19 23 23 C 1.50699 * 119.99881 * 179.97438 * 21 20 19 24 24 C 1.53004 * 109.47019 * 180.02562 * 23 21 20 25 25 C 1.53784 * 113.61624 * 185.00330 * 24 23 21 26 26 C 1.53777 * 87.07943 * 220.02185 * 25 24 23 27 27 C 1.53777 * 113.61067 * 87.50619 * 24 23 21 28 28 H 0.97006 * 119.99807 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.46869 * 60.00352 * 10 9 7 30 30 H 1.09000 * 109.47195 * 300.00027 * 10 9 7 31 31 H 1.09005 * 110.36770 * 274.67658 * 14 13 11 32 32 H 1.09000 * 110.36435 * 36.88764 * 14 13 11 33 33 H 1.09001 * 111.00534 * 155.08706 * 15 14 13 34 34 H 1.09006 * 111.00022 * 278.93589 * 15 14 13 35 35 H 1.08997 * 110.72027 * 206.13911 * 16 15 14 36 36 H 1.08995 * 110.71594 * 82.86081 * 16 15 14 37 37 H 1.08996 * 109.47181 * 65.39903 * 19 17 13 38 38 H 1.09003 * 109.46859 * 305.40646 * 19 17 13 39 39 H 0.97008 * 120.00346 * 355.02971 * 20 19 17 40 40 H 1.09002 * 109.47012 * 60.00727 * 23 21 20 41 41 H 1.08995 * 109.47850 * 300.00477 * 23 21 20 42 42 H 1.09000 * 112.90865 * 316.25465 * 24 23 21 43 43 H 1.09007 * 113.61223 * 334.57220 * 25 24 23 44 44 H 1.08998 * 113.61770 * 105.46613 * 25 24 23 45 45 H 1.09003 * 113.61483 * 139.98390 * 26 25 24 46 46 H 1.08998 * 113.61442 * 270.87919 * 26 25 24 47 47 H 1.09006 * 113.61215 * 254.52722 * 27 24 23 48 48 H 1.09000 * 113.62132 * 25.43576 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6528 0.6999 6 1 3.5478 1.4403 0.7000 7 6 2.0102 -1.2020 0.0005 8 1 1.4703 -2.1373 0.0005 9 16 3.7723 -1.2020 0.0012 10 6 4.0866 -2.9845 0.0025 11 6 5.5730 -3.2325 0.0039 12 8 6.3440 -2.2963 0.0045 13 7 6.0456 -4.4947 0.0045 14 6 5.2296 -5.7178 -0.1030 15 6 6.1939 -6.7893 -0.6700 16 6 7.5227 -6.4202 0.0410 17 6 7.4604 -4.8798 0.1118 18 1 8.0263 -4.4454 -0.7123 19 6 8.0315 -4.3968 1.4466 20 7 9.4700 -4.6704 1.4899 21 6 10.2068 -4.2393 2.5329 22 8 9.6789 -3.6254 3.4358 23 6 11.6865 -4.5213 2.5777 24 6 12.2801 -3.9287 3.8574 25 6 13.8103 -4.0553 3.9429 26 6 13.6212 -4.3833 5.4333 27 6 12.2127 -4.8786 5.0648 28 1 -0.4850 0.8401 -0.0004 29 1 3.6440 -3.4321 -0.8874 30 1 3.6433 -3.4310 0.8926 31 1 4.8645 -6.0178 0.8793 32 1 4.3943 -5.5578 -0.7848 33 1 5.8688 -7.7926 -0.3944 34 1 6.2903 -6.6949 -1.7517 35 1 8.3793 -6.7448 -0.5496 36 1 7.5572 -6.8511 1.0416 37 1 7.5371 -4.9212 2.2643 38 1 7.8623 -3.3248 1.5475 39 1 9.8923 -5.1617 0.7679 40 1 12.1688 -4.0702 1.7104 41 1 11.8518 -5.5985 2.5659 42 1 11.9124 -2.9249 4.0704 43 1 14.2130 -4.8844 3.3609 44 1 14.3366 -3.1175 3.7654 45 1 14.2811 -5.1723 5.7939 46 1 13.6202 -3.5038 6.0772 47 1 11.4493 -4.6053 5.7934 48 1 12.1787 -5.9328 4.7899 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001581235758.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:59:15 Heat of formation + Delta-G solvation = -87.549687 kcal Electronic energy + Delta-G solvation = -26864.600483 eV Core-core repulsion = 23044.761561 eV Total energy + Delta-G solvation = -3819.838921 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.51166 -40.82449 -39.24871 -38.55321 -35.85499 -34.70676 -33.08464 -32.13497 -30.94202 -29.90972 -27.88532 -26.65250 -26.42610 -24.52249 -23.70516 -22.14125 -21.54995 -20.45944 -20.24384 -19.56808 -18.33186 -18.11445 -17.62334 -17.16652 -16.82585 -16.63670 -16.49166 -16.03717 -15.90390 -15.48608 -15.27596 -15.06621 -14.93268 -14.70585 -14.15865 -14.05842 -13.92389 -13.72424 -13.57008 -13.38294 -13.27281 -13.06918 -12.96239 -12.80148 -12.70883 -12.31209 -12.13469 -11.97244 -11.89936 -11.64878 -11.52443 -11.26043 -11.20398 -11.09725 -11.05739 -10.82913 -10.57942 -10.17576 -9.81855 -9.05015 -8.54860 -6.26297 0.91288 1.27511 1.38561 1.44506 1.49236 1.65306 1.85690 2.21599 2.35572 2.65251 2.83142 3.36280 3.51355 3.63445 3.74938 3.78546 3.79789 3.82327 4.00450 4.05304 4.09578 4.12307 4.23122 4.35064 4.38893 4.48526 4.56626 4.64956 4.73177 4.74355 4.80003 4.88286 4.91664 4.93535 4.99408 5.02245 5.09907 5.12500 5.18149 5.26213 5.35836 5.40323 5.41964 5.64796 5.67658 6.07749 6.28742 6.54564 6.90234 6.99688 7.28633 8.57393 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013063 B = 0.002323 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.010851 B =12051.288905 C =13725.581134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.047 3.953 3 Si 0.913 3.087 4 H -0.260 1.260 5 H -0.257 1.257 6 H -0.242 1.242 7 C -0.527 4.527 8 H 0.064 0.936 9 S -0.179 6.179 10 C -0.102 4.102 11 C 0.546 3.454 12 O -0.559 6.559 13 N -0.612 5.612 14 C 0.083 3.917 15 C -0.119 4.119 16 C -0.116 4.116 17 C 0.128 3.872 18 H 0.080 0.920 19 C 0.117 3.883 20 N -0.711 5.711 21 C 0.503 3.497 22 O -0.593 6.593 23 C -0.119 4.119 24 C -0.108 4.108 25 C -0.124 4.124 26 C -0.143 4.143 27 C -0.140 4.140 28 H 0.278 0.722 29 H 0.114 0.886 30 H 0.107 0.893 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.114 0.886 34 H 0.084 0.916 35 H 0.118 0.882 36 H 0.088 0.912 37 H 0.058 0.942 38 H 0.030 0.970 39 H 0.420 0.580 40 H 0.118 0.882 41 H 0.128 0.872 42 H 0.064 0.936 43 H 0.105 0.895 44 H 0.068 0.932 45 H 0.081 0.919 46 H 0.070 0.930 47 H 0.041 0.959 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.669 -22.127 1.008 35.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.159 4.159 3 Si 0.735 3.265 4 H -0.184 1.184 5 H -0.182 1.182 6 H -0.166 1.166 7 C -0.675 4.675 8 H 0.082 0.918 9 S 0.048 5.952 10 C -0.253 4.253 11 C 0.334 3.666 12 O -0.437 6.437 13 N -0.347 5.347 14 C -0.039 4.039 15 C -0.157 4.157 16 C -0.154 4.154 17 C 0.024 3.976 18 H 0.098 0.902 19 C -0.009 4.009 20 N -0.365 5.365 21 C 0.291 3.709 22 O -0.473 6.473 23 C -0.158 4.158 24 C -0.127 4.127 25 C -0.161 4.161 26 C -0.181 4.181 27 C -0.177 4.177 28 H 0.087 0.913 29 H 0.132 0.868 30 H 0.126 0.874 31 H 0.098 0.902 32 H 0.101 0.899 33 H 0.132 0.868 34 H 0.103 0.897 35 H 0.136 0.864 36 H 0.107 0.893 37 H 0.077 0.923 38 H 0.049 0.951 39 H 0.258 0.742 40 H 0.136 0.864 41 H 0.146 0.854 42 H 0.083 0.917 43 H 0.124 0.876 44 H 0.087 0.913 45 H 0.100 0.900 46 H 0.088 0.912 47 H 0.060 0.940 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 28.201 -20.158 1.636 34.704 hybrid contribution -1.623 0.186 -0.031 1.634 sum 26.578 -19.972 1.605 33.285 Atomic orbital electron populations 1.70009 1.07136 1.29028 1.48988 1.25527 0.95298 1.02123 0.92902 0.85893 0.80555 0.79796 0.80293 1.18450 1.18163 1.16578 1.22414 0.89926 0.96762 1.58386 0.91801 1.84777 1.06849 1.06035 1.97573 1.23213 0.95488 0.99545 1.07031 1.19712 0.89496 0.81987 0.75429 1.90699 1.59321 1.43172 1.50517 1.48445 1.08593 1.05066 1.72565 1.22767 0.95347 0.83354 1.02425 1.22789 0.93182 0.98766 1.00945 1.22809 1.00213 0.89159 1.03218 1.21882 0.81898 0.98204 0.95601 0.90200 1.21416 0.81855 0.99682 0.97910 1.45713 1.07838 1.58382 1.24549 1.21621 0.91056 0.77413 0.80800 1.90722 1.74883 1.42375 1.39309 1.21757 0.88272 1.05085 1.00700 1.22335 0.96833 0.99197 0.94292 1.22958 0.93809 1.02820 0.96536 1.22804 0.96776 1.01384 0.97106 1.23011 0.97272 0.99770 0.97650 0.91299 0.86835 0.87445 0.90217 0.89861 0.86795 0.89699 0.86416 0.89321 0.92350 0.95136 0.74229 0.86363 0.85355 0.91720 0.87630 0.91343 0.90004 0.91159 0.94006 0.88622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.27 13.97 21.65 0.30 -55.96 16 2 C 0.05 2.82 5.50 84.85 0.47 3.29 16 3 Si 0.91 46.23 27.74 68.60 1.90 48.14 16 4 H -0.26 -12.76 7.11 99.48 0.71 -12.05 16 5 H -0.26 -12.20 7.11 99.48 0.71 -11.49 16 6 H -0.24 -12.43 6.74 99.48 0.67 -11.76 16 7 C -0.53 -31.38 10.04 67.95 0.68 -30.69 16 8 H 0.06 3.98 8.03 -2.91 -0.02 3.95 16 9 S -0.18 -9.43 18.55 -56.49 -1.05 -10.48 16 10 C -0.10 -4.07 5.25 71.24 0.37 -3.70 16 11 C 0.55 20.23 7.59 87.66 0.66 20.90 16 12 O -0.56 -25.49 15.04 -3.03 -0.05 -25.54 16 13 N -0.61 -15.63 3.06 -788.06 -2.41 -18.05 16 14 C 0.08 1.38 6.65 86.85 0.58 1.96 16 15 C -0.12 -1.02 7.08 31.99 0.23 -0.79 16 16 C -0.12 -0.99 6.12 31.78 0.19 -0.79 16 17 C 0.13 2.48 2.92 45.34 0.13 2.61 16 18 H 0.08 1.60 8.14 -2.38 -0.02 1.59 16 19 C 0.12 2.92 5.08 86.38 0.44 3.35 16 20 N -0.71 -12.41 5.41 -463.08 -2.51 -14.92 16 21 C 0.50 11.09 7.83 87.66 0.69 11.78 16 22 O -0.59 -20.40 15.75 -3.03 -0.05 -20.45 16 23 C -0.12 -1.41 5.54 29.85 0.17 -1.24 16 24 C -0.11 -1.72 3.15 -10.27 -0.03 -1.76 16 25 C -0.12 -1.28 7.64 31.12 0.24 -1.04 16 26 C -0.14 -1.75 8.08 31.12 0.25 -1.50 16 27 C -0.14 -2.16 7.63 31.12 0.24 -1.92 16 28 H 0.28 15.79 8.31 -92.70 -0.77 15.02 16 29 H 0.11 4.11 7.76 -2.39 -0.02 4.09 16 30 H 0.11 4.05 8.14 -2.40 -0.02 4.03 16 31 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 32 H 0.08 1.40 7.50 -2.39 -0.02 1.39 16 33 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 35 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 36 H 0.09 0.70 7.76 -2.39 -0.02 0.68 16 37 H 0.06 1.53 8.01 -2.39 -0.02 1.51 16 38 H 0.03 1.11 6.88 -2.39 -0.02 1.10 16 39 H 0.42 3.45 8.28 -92.70 -0.77 2.68 16 40 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.13 0.66 7.84 -2.39 -0.02 0.64 16 42 H 0.06 1.50 7.68 -2.39 -0.02 1.48 16 43 H 0.11 0.60 8.10 -2.38 -0.02 0.58 16 44 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.04 0.86 8.14 -2.38 -0.02 0.84 16 48 H 0.10 1.10 7.90 -2.39 -0.02 1.08 16 Total: -1.00 -87.20 400.18 1.59 -85.61 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: 0.14 Total: 11.20 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: 5.30 Total: 0.44 kcal Atomic # 7 Polarization: -84.31 SS G_CDS: -4.62 Total: -88.93 kcal Atomic # 8 Polarization: -45.89 SS G_CDS: -0.09 Total: -45.99 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 1.90 Total: 48.14 kcal Atomic # 16 Polarization: -9.43 SS G_CDS: -1.05 Total: -10.48 kcal Total: -87.20 1.59 -85.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001581235758.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.943 kcal (2) G-P(sol) polarization free energy of solvation -87.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds