Wall clock time and date at job start Tue Mar 31 2020 23:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86793 * 120.00189 * 2 1 4 4 H 1.48504 * 109.47449 * 270.00124 * 3 2 1 5 5 H 1.48502 * 109.47197 * 30.00168 * 3 2 1 6 6 H 1.48507 * 109.47101 * 150.00398 * 3 2 1 7 7 C 1.38802 * 119.99567 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00047 * 0.02562 * 7 2 1 9 9 S 1.76197 * 119.99885 * 179.97438 * 7 2 1 10 10 C 1.80998 * 99.99955 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.46974 * 180.02562 * 10 9 7 12 12 O 1.21279 * 119.99883 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00010 * 180.02562 * 11 10 9 14 14 C 1.47425 * 125.64416 * 4.94523 * 13 11 10 15 15 C 1.54914 * 104.83004 * 204.09575 * 14 13 11 16 16 C 1.55158 * 101.58176 * 322.99637 * 15 14 13 17 17 C 1.47014 * 125.64918 * 184.91264 * 13 11 10 18 18 H 1.08994 * 110.01338 * 59.47909 * 17 13 11 19 19 C 1.53001 * 109.88328 * 298.38960 * 17 13 11 20 20 N 1.46503 * 109.47566 * 176.83220 * 19 17 13 21 21 C 1.34770 * 119.99876 * 184.96374 * 20 19 17 22 22 O 1.21282 * 120.00480 * 359.97438 * 21 20 19 23 23 C 1.50708 * 119.99734 * 179.97438 * 21 20 19 24 24 C 1.52999 * 109.46988 * 179.97438 * 23 21 20 25 25 C 1.53784 * 113.61169 * 272.49804 * 24 23 21 26 26 C 1.53787 * 87.07766 * 220.01860 * 25 24 23 27 27 C 1.53782 * 87.08228 * 25.43642 * 26 25 24 28 28 H 0.97006 * 119.99479 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47226 * 60.00271 * 10 9 7 30 30 H 1.09001 * 109.47007 * 299.99714 * 10 9 7 31 31 H 1.09005 * 110.36649 * 85.26254 * 14 13 11 32 32 H 1.08994 * 110.37068 * 322.93574 * 14 13 11 33 33 H 1.09003 * 111.00293 * 81.06633 * 15 14 13 34 34 H 1.08998 * 111.00311 * 204.92041 * 15 14 13 35 35 H 1.08999 * 110.72196 * 153.86161 * 16 15 14 36 36 H 1.09003 * 110.71966 * 277.13550 * 16 15 14 37 37 H 1.09005 * 109.47049 * 296.83001 * 19 17 13 38 38 H 1.08998 * 109.47134 * 56.82862 * 19 17 13 39 39 H 0.96996 * 119.99568 * 4.95424 * 20 19 17 40 40 H 1.08993 * 109.47102 * 300.00083 * 23 21 20 41 41 H 1.09002 * 109.46872 * 60.00249 * 23 21 20 42 42 H 1.08996 * 112.85138 * 43.80246 * 24 23 21 43 43 H 1.09002 * 113.61631 * 334.56781 * 25 24 23 44 44 H 1.09002 * 113.61304 * 105.47531 * 25 24 23 45 45 H 1.08994 * 113.61812 * 270.88162 * 26 25 24 46 46 H 1.09007 * 113.60824 * 139.98150 * 26 25 24 47 47 H 1.08997 * 113.61229 * 220.01965 * 27 26 25 48 48 H 1.09000 * 113.69256 * 89.11954 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4479 2.6526 0.7001 6 1 3.5480 1.4400 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0005 9 16 3.7722 -1.2022 -0.0001 10 6 4.0864 -2.9847 0.0001 11 6 5.5729 -3.2328 0.0002 12 8 6.3439 -2.2966 -0.0003 13 7 6.0455 -4.4950 -0.0001 14 6 5.2290 -5.7180 -0.1038 15 6 6.0927 -6.8278 0.5460 16 6 7.5181 -6.4221 0.0866 17 6 7.4606 -4.8801 0.1023 18 1 7.8835 -4.5028 1.0334 19 6 8.2403 -4.3181 -1.0882 20 7 9.6611 -4.6424 -0.9385 21 6 10.5587 -4.1611 -1.8211 22 8 10.1903 -3.4599 -2.7396 23 6 12.0204 -4.4942 -1.6668 24 6 12.8166 -3.8286 -2.7910 25 6 12.9093 -4.6805 -4.0680 26 6 14.3697 -4.2118 -4.1802 27 6 14.3383 -4.0059 -2.6565 28 1 -0.4850 0.8401 0.0004 29 1 3.6432 -3.4319 -0.8896 30 1 3.6438 -3.4315 0.8904 31 1 5.0312 -5.9546 -1.1493 32 1 4.2934 -5.5971 0.4421 33 1 6.0102 -6.8012 1.6326 34 1 5.8223 -7.8102 0.1590 35 1 8.2680 -6.7872 0.7883 36 1 7.7184 -6.7904 -0.9197 37 1 7.8623 -4.7589 -2.0107 38 1 8.1166 -3.2358 -1.1253 39 1 9.9557 -5.2034 -0.2041 40 1 12.3765 -4.1292 -0.7035 41 1 12.1541 -5.5748 -1.7179 42 1 12.5114 -2.7982 -2.9731 43 1 12.8067 -5.7505 -3.8875 44 1 12.2729 -4.3238 -4.8779 45 1 14.4893 -3.2864 -4.7435 46 1 15.0562 -4.9954 -4.5008 47 1 14.8554 -3.1048 -2.3270 48 1 14.6262 -4.8908 -2.0890 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001581235759.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:59:19 Heat of formation + Delta-G solvation = -61.888467 kcal Electronic energy + Delta-G solvation = -26851.170191 eV Core-core repulsion = 23032.444023 eV Total energy + Delta-G solvation = -3818.726167 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.50374 -39.88424 -38.48663 -37.39599 -34.86892 -32.44020 -31.98091 -31.37335 -30.02871 -28.66974 -25.93499 -25.78391 -25.60695 -23.76575 -22.77742 -21.38337 -20.65859 -19.67263 -19.14971 -17.75516 -17.24549 -17.10088 -16.54171 -16.05561 -15.69111 -15.30949 -15.04762 -14.93173 -14.68385 -14.54900 -14.18208 -13.98385 -13.73938 -13.34308 -13.21881 -12.99924 -12.80577 -12.76785 -12.65655 -12.33436 -12.17254 -11.89915 -11.73953 -11.56174 -11.25780 -11.18121 -11.09077 -11.00095 -10.94940 -10.62522 -10.61247 -10.50024 -9.96503 -9.85268 -9.57716 -9.16405 -9.00020 -8.70187 -8.49758 -6.92237 -6.28931 -4.00765 2.51771 2.54638 2.85811 2.97823 3.29738 3.34820 3.51499 3.60281 4.15135 4.20963 4.27403 4.31644 4.33751 4.39020 4.49116 4.55732 4.69986 4.74028 4.84724 4.97622 5.01271 5.08991 5.10210 5.15058 5.19618 5.25498 5.37341 5.37419 5.42022 5.44945 5.49524 5.54942 5.58240 5.62551 5.72419 5.78740 5.80562 5.84544 5.93603 5.96932 6.00009 6.15902 6.23270 6.38761 7.30458 7.49674 7.94077 8.10069 8.37774 8.41261 9.17303 10.80176 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013801 B = 0.002279 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.384698 B =12284.620511 C =13925.549802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.141 6.141 10 C -0.118 4.118 11 C 0.547 3.453 12 O -0.511 6.511 13 N -0.619 5.619 14 C 0.098 3.902 15 C -0.132 4.132 16 C -0.131 4.131 17 C 0.130 3.870 18 H 0.080 0.920 19 C 0.106 3.894 20 N -0.729 5.729 21 C 0.510 3.490 22 O -0.532 6.532 23 C -0.130 4.130 24 C -0.096 4.096 25 C -0.135 4.135 26 C -0.143 4.143 27 C -0.138 4.138 28 H 0.271 0.729 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.090 0.910 39 H 0.397 0.603 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.101 0.899 43 H 0.077 0.923 44 H 0.069 0.931 45 H 0.080 0.920 46 H 0.066 0.934 47 H 0.067 0.933 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.105 -19.092 -0.669 31.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.085 5.915 10 C -0.268 4.268 11 C 0.336 3.664 12 O -0.385 6.385 13 N -0.357 5.357 14 C -0.025 4.025 15 C -0.170 4.170 16 C -0.169 4.169 17 C 0.026 3.974 18 H 0.098 0.902 19 C -0.018 4.018 20 N -0.382 5.382 21 C 0.296 3.704 22 O -0.408 6.408 23 C -0.170 4.170 24 C -0.115 4.115 25 C -0.173 4.173 26 C -0.181 4.181 27 C -0.176 4.176 28 H 0.081 0.919 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.084 0.916 38 H 0.108 0.892 39 H 0.231 0.769 40 H 0.112 0.888 41 H 0.110 0.890 42 H 0.119 0.881 43 H 0.096 0.904 44 H 0.088 0.912 45 H 0.098 0.902 46 H 0.084 0.916 47 H 0.086 0.914 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 25.740 -16.972 -1.345 30.861 hybrid contribution -0.844 -0.676 0.386 1.148 sum 24.896 -17.648 -0.959 30.532 Atomic orbital electron populations 1.69942 1.05889 1.27761 1.48041 1.24709 0.94462 0.98964 0.93162 0.86739 0.81880 0.83267 0.79995 1.19170 1.19927 1.15929 1.22299 0.88193 0.97531 1.58832 0.89380 1.84829 1.09360 0.99864 1.97415 1.23261 0.93472 1.04372 1.05703 1.20066 0.90675 0.80579 0.75112 1.90715 1.58691 1.41222 1.47824 1.48458 1.06222 1.05725 1.75297 1.22370 0.95222 0.83753 1.01144 1.22773 0.94344 0.98472 1.01372 1.22777 0.98056 0.93350 1.02683 1.21632 0.82956 0.94621 0.98205 0.90195 1.21782 0.79338 1.03048 0.97678 1.45908 1.07605 1.53692 1.31014 1.20724 0.88194 0.79643 0.81818 1.90739 1.80962 1.36963 1.32150 1.21703 0.91547 1.02441 1.01349 1.22358 0.93934 1.00896 0.94281 1.22948 0.96617 0.99371 0.98315 1.22799 0.97200 1.01548 0.96509 1.22984 0.95858 1.01951 0.96788 0.91941 0.88537 0.88458 0.91105 0.89849 0.90325 0.89648 0.89967 0.90173 0.91611 0.89182 0.76922 0.88776 0.88954 0.88111 0.90447 0.91193 0.90169 0.91573 0.91416 0.90134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.63 13.97 55.49 0.78 -25.86 16 2 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 3 Si 0.86 22.05 27.74 -169.99 -4.71 17.33 16 4 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.24 -6.06 6.74 56.52 0.38 -5.68 16 7 C -0.52 -15.08 10.04 30.94 0.31 -14.77 16 8 H 0.09 2.65 8.03 -52.49 -0.42 2.22 16 9 S -0.14 -3.62 18.55 -107.50 -1.99 -5.62 16 10 C -0.12 -2.31 5.09 36.01 0.18 -2.13 16 11 C 0.55 9.97 7.69 -10.98 -0.08 9.88 16 12 O -0.51 -11.19 14.67 5.56 0.08 -11.11 16 13 N -0.62 -8.19 3.06 -163.02 -0.50 -8.69 16 14 C 0.10 0.94 6.74 -2.53 -0.02 0.92 16 15 C -0.13 -0.85 7.09 -24.58 -0.17 -1.03 16 16 C -0.13 -0.84 6.00 -24.90 -0.15 -0.99 16 17 C 0.13 1.38 3.00 -66.96 -0.20 1.17 16 18 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 19 C 0.11 1.32 5.05 -4.04 -0.02 1.30 16 20 N -0.73 -6.87 5.39 -60.29 -0.33 -7.19 16 21 C 0.51 5.73 7.83 -10.98 -0.09 5.64 16 22 O -0.53 -8.64 15.75 5.56 0.09 -8.55 16 23 C -0.13 -0.93 5.54 -27.88 -0.15 -1.08 16 24 C -0.10 -0.80 3.15 -89.80 -0.28 -1.08 16 25 C -0.14 -1.08 7.63 -25.91 -0.20 -1.28 16 26 C -0.14 -0.96 8.08 -25.91 -0.21 -1.17 16 27 C -0.14 -0.87 7.64 -25.92 -0.20 -1.06 16 28 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 29 H 0.10 1.78 8.14 -51.92 -0.42 1.36 16 30 H 0.10 1.77 7.95 -51.92 -0.41 1.36 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.79 7.47 -51.93 -0.39 0.40 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.08 0.50 7.80 -51.93 -0.40 0.10 16 37 H 0.07 0.87 8.07 -51.93 -0.42 0.45 16 38 H 0.09 1.55 6.59 -51.93 -0.34 1.21 16 39 H 0.40 2.29 8.19 -40.82 -0.33 1.95 16 40 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.09 0.45 7.84 -51.93 -0.41 0.04 16 42 H 0.10 1.07 7.67 -51.93 -0.40 0.67 16 43 H 0.08 0.53 7.89 -51.93 -0.41 0.12 16 44 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.08 0.40 8.10 -51.93 -0.42 -0.02 16 LS Contribution 399.64 15.07 6.02 6.02 Total: -1.00 -36.75 399.64 -10.11 -46.86 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -8.17 Total: -0.25 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -1.38 Total: -2.95 kcal Atomic # 7 Polarization: -41.69 SS G_CDS: -0.05 Total: -41.74 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: 0.17 Total: -19.66 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.71 Total: 17.33 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.62 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.75 -10.11 -46.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001581235759.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.025 kcal (2) G-P(sol) polarization free energy of solvation -36.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds