Wall clock time and date at job start Tue Mar 31 2020 23:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31637 * 1 3 3 Si 1.86793 * 119.99550 * 2 1 4 4 H 1.48497 * 109.47247 * 270.00128 * 3 2 1 5 5 H 1.48501 * 109.47429 * 30.00597 * 3 2 1 6 6 H 1.48503 * 109.47242 * 150.00338 * 3 2 1 7 7 C 1.38793 * 120.00153 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00214 * 359.97438 * 7 2 1 9 9 S 1.76198 * 120.00094 * 179.97438 * 7 2 1 10 10 C 1.80998 * 100.00379 * 179.97438 * 9 7 2 11 11 C 1.50689 * 109.47327 * 180.02562 * 10 9 7 12 12 O 1.21286 * 120.00258 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00146 * 179.97438 * 11 10 9 14 14 C 1.46508 * 119.99954 * 180.02562 * 13 11 10 15 15 C 1.53004 * 109.46806 * 180.02562 * 14 13 11 16 16 H 1.09003 * 109.46904 * 304.99743 * 15 14 13 17 17 C 1.52998 * 109.47427 * 64.99504 * 15 14 13 18 18 C 1.53006 * 109.47063 * 179.97438 * 17 15 14 19 19 C 1.52999 * 109.47148 * 300.00349 * 18 17 15 20 20 C 1.53004 * 109.47194 * 59.99641 * 19 18 17 21 21 C 1.52997 * 109.47278 * 300.00130 * 20 19 18 22 22 H 1.09004 * 109.46812 * 180.02562 * 21 20 19 23 23 N 1.46498 * 109.47036 * 300.00073 * 21 20 19 24 24 C 1.34777 * 119.99828 * 274.72131 * 23 21 20 25 25 O 1.21283 * 120.00222 * 0.28168 * 24 23 21 26 26 C 1.50703 * 120.00290 * 180.27728 * 24 23 21 27 27 C 1.52998 * 117.49753 * 248.62813 * 26 24 23 28 28 C 1.52992 * 117.50304 * 180.02562 * 26 24 23 29 29 H 0.96991 * 120.00309 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.47085 * 59.99751 * 10 9 7 31 31 H 1.09002 * 109.47019 * 300.00162 * 10 9 7 32 32 H 0.96995 * 120.00107 * 359.97438 * 13 11 10 33 33 H 1.08995 * 109.47059 * 60.00227 * 14 13 11 34 34 H 1.09000 * 109.46777 * 299.99098 * 14 13 11 35 35 H 1.09003 * 109.46883 * 60.00227 * 17 15 14 36 36 H 1.08997 * 109.47266 * 300.00280 * 17 15 14 37 37 H 1.08995 * 109.47185 * 180.02562 * 18 17 15 38 38 H 1.09003 * 109.47067 * 60.00362 * 18 17 15 39 39 H 1.09003 * 109.47147 * 299.99964 * 19 18 17 40 40 H 1.09000 * 109.47204 * 179.97438 * 19 18 17 41 41 H 1.08997 * 109.47037 * 179.97438 * 20 19 18 42 42 H 1.09003 * 109.46809 * 60.00116 * 20 19 18 43 43 H 0.97001 * 120.00384 * 95.00578 * 23 21 20 44 44 H 1.09001 * 115.54758 * 34.32883 * 26 24 23 45 45 H 1.08998 * 117.50110 * 359.97438 * 27 26 24 46 46 H 1.09004 * 117.49475 * 145.02172 * 27 26 24 47 47 H 1.09000 * 117.49979 * 214.98118 * 28 26 24 48 48 H 1.09007 * 117.49555 * 0.02562 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4403 0.7000 7 6 2.0104 -1.2020 -0.0005 8 1 1.4704 -2.1374 -0.0005 9 16 3.7723 -1.2019 -0.0012 10 6 4.0868 -2.9844 -0.0009 11 6 5.5731 -3.2323 -0.0008 12 8 6.3441 -2.2961 -0.0005 13 7 6.0459 -4.4945 -0.0001 14 6 7.4910 -4.7354 0.0006 15 6 7.7567 -6.2422 0.0007 16 1 7.2389 -6.7024 0.8423 17 6 7.2454 -6.8504 -1.3068 18 6 7.5118 -8.3571 -1.3069 19 6 9.0156 -8.6092 -1.1808 20 6 9.5268 -8.0009 0.1268 21 6 9.2605 -6.4943 0.1268 22 1 9.6251 -6.0610 1.0582 23 7 9.9559 -5.8755 -1.0044 24 6 11.2478 -5.5110 -0.8835 25 8 11.8361 -5.7000 0.1601 26 6 11.9615 -4.8687 -2.0451 27 6 13.0682 -5.6752 -2.7276 28 6 13.4272 -4.4784 -1.8453 29 1 -0.4850 0.8399 0.0004 30 1 3.6435 -3.4317 -0.8906 31 1 3.6442 -3.4313 0.8893 32 1 5.4293 -5.2433 0.0007 33 1 7.9335 -4.2880 0.8905 34 1 7.9342 -4.2889 -0.8895 35 1 7.7632 -6.3903 -2.1484 36 1 6.1742 -6.6704 -1.3969 37 1 7.1480 -8.7903 -2.2385 38 1 6.9943 -8.8176 -0.4652 39 1 9.5330 -8.1487 -2.0224 40 1 9.2053 -9.6826 -1.1804 41 1 10.5980 -8.1809 0.2168 42 1 9.0094 -8.4614 0.9684 43 1 9.4854 -5.7243 -1.8391 44 1 11.3492 -4.2218 -2.6734 45 1 13.2804 -6.6701 -2.3362 46 1 13.1842 -5.5588 -3.8052 47 1 13.7795 -3.5744 -2.3422 48 1 13.8755 -4.6865 -0.8738 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001584401921.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:52 Heat of formation + Delta-G solvation = -72.689326 kcal Electronic energy + Delta-G solvation = -27208.221000 eV Core-core repulsion = 23389.026472 eV Total energy + Delta-G solvation = -3819.194528 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.92470 -39.48873 -38.66496 -36.36636 -34.85184 -34.04480 -32.45237 -31.65088 -30.46001 -29.27124 -25.89376 -25.53210 -24.81045 -22.91243 -22.75111 -21.80710 -20.82837 -20.34947 -19.46314 -18.03768 -17.81219 -16.53748 -16.36662 -16.10036 -15.73062 -15.41561 -15.33617 -14.97356 -14.87047 -14.76782 -14.25411 -14.08313 -13.85495 -13.50717 -13.28579 -12.90409 -12.83111 -12.75623 -12.56349 -12.44209 -12.23035 -11.93854 -11.89815 -11.41794 -11.27878 -11.03609 -11.02000 -10.97998 -10.89592 -10.81009 -10.59812 -10.48203 -10.11516 -9.87053 -9.56717 -9.35570 -9.03436 -8.97518 -8.51506 -6.93330 -6.30246 -4.02097 2.20745 2.74418 2.79154 2.95541 3.28350 3.32739 3.48775 3.49797 3.62853 4.19555 4.21732 4.27767 4.32038 4.34300 4.43468 4.50367 4.66497 4.70730 4.75955 4.79199 4.87272 4.97381 5.01935 5.08805 5.17090 5.19185 5.20073 5.27486 5.37008 5.42105 5.53108 5.55456 5.60232 5.64732 5.70956 5.74692 5.75426 5.78313 5.81554 5.90131 5.96236 5.98937 6.19893 6.48394 7.17972 7.57110 7.92812 7.94103 8.40051 8.46714 9.15955 10.78953 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015559 B = 0.002262 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.129746 B =12376.774180 C =13671.132798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.124 4.124 11 C 0.530 3.470 12 O -0.519 6.519 13 N -0.736 5.736 14 C 0.127 3.873 15 C -0.107 4.107 16 H 0.094 0.906 17 C -0.117 4.117 18 C -0.120 4.120 19 C -0.118 4.118 20 C -0.129 4.129 21 C 0.156 3.844 22 H 0.092 0.908 23 N -0.718 5.718 24 C 0.545 3.455 25 O -0.541 6.541 26 C -0.197 4.197 27 C -0.153 4.153 28 C -0.147 4.147 29 H 0.271 0.729 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.399 0.601 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.401 0.599 44 H 0.124 0.876 45 H 0.098 0.902 46 H 0.104 0.896 47 H 0.103 0.897 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.111 -19.907 -5.465 30.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.114 4.114 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.275 4.275 11 C 0.315 3.685 12 O -0.393 6.393 13 N -0.391 5.391 14 C 0.003 3.997 15 C -0.126 4.126 16 H 0.113 0.887 17 C -0.155 4.155 18 C -0.158 4.158 19 C -0.156 4.156 20 C -0.167 4.167 21 C 0.051 3.949 22 H 0.110 0.890 23 N -0.370 5.370 24 C 0.332 3.668 25 O -0.418 6.418 26 C -0.219 4.219 27 C -0.190 4.190 28 C -0.184 4.184 29 H 0.081 0.919 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.233 0.767 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.237 0.763 44 H 0.142 0.858 45 H 0.117 0.883 46 H 0.122 0.878 47 H 0.122 0.878 48 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 23.643 -18.369 -4.698 30.306 hybrid contribution -1.514 -0.571 -0.480 1.688 sum 22.129 -18.940 -5.178 29.584 Atomic orbital electron populations 1.69937 1.05905 1.27780 1.48063 1.24717 0.94463 0.98984 0.93187 0.86731 0.81909 0.83268 0.79924 1.19218 1.19936 1.15916 1.22313 0.88267 0.97524 1.58781 0.89392 1.84806 1.09273 1.00060 1.97423 1.23274 0.94024 1.04404 1.05766 1.20287 0.90584 0.82306 0.75283 1.90709 1.58788 1.42219 1.47600 1.45967 1.07325 1.08029 1.77773 1.21284 0.81616 0.94186 1.02598 1.21716 0.95390 0.95486 1.00029 0.88738 1.21629 1.01657 0.95606 0.96588 1.21559 0.96243 0.95769 1.02192 1.21507 0.95793 1.00454 0.97818 1.21904 1.01887 0.94568 0.98353 1.20873 0.90353 0.93199 0.90520 0.88974 1.46034 1.11739 1.62542 1.16714 1.19645 0.81658 0.77291 0.88195 1.90697 1.66287 1.55231 1.29543 1.22223 0.93106 1.05869 1.00655 1.22922 0.99854 0.97052 0.99217 1.22945 0.94101 0.99081 1.02313 0.91934 0.88540 0.88485 0.76690 0.91452 0.91597 0.91851 0.91000 0.91719 0.91647 0.91959 0.92005 0.91288 0.90850 0.76325 0.85763 0.88347 0.87793 0.87843 0.87394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.46 13.97 55.49 0.78 -25.68 16 2 C 0.10 2.77 5.50 -17.43 -0.10 2.68 16 3 Si 0.86 21.75 27.74 -169.99 -4.71 17.03 16 4 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.24 -5.97 6.74 56.52 0.38 -5.59 16 7 C -0.52 -14.92 10.04 30.94 0.31 -14.61 16 8 H 0.09 2.62 8.03 -52.48 -0.42 2.20 16 9 S -0.14 -3.57 18.55 -107.50 -1.99 -5.57 16 10 C -0.12 -2.34 6.16 36.00 0.22 -2.12 16 11 C 0.53 9.11 7.85 -10.99 -0.09 9.02 16 12 O -0.52 -11.07 15.86 5.55 0.09 -10.98 16 13 N -0.74 -8.61 5.28 -60.29 -0.32 -8.93 16 14 C 0.13 1.31 4.83 -4.04 -0.02 1.29 16 15 C -0.11 -0.73 2.02 -90.62 -0.18 -0.91 16 16 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 17 C -0.12 -0.68 4.91 -26.73 -0.13 -0.81 16 18 C -0.12 -0.62 5.92 -26.73 -0.16 -0.78 16 19 C -0.12 -0.66 5.77 -26.73 -0.15 -0.82 16 20 C -0.13 -0.87 5.61 -26.73 -0.15 -1.02 16 21 C 0.16 1.19 2.23 -67.93 -0.15 1.04 16 22 H 0.09 0.90 7.57 -51.93 -0.39 0.50 16 23 N -0.72 -5.44 3.61 -53.81 -0.19 -5.64 16 24 C 0.55 5.34 7.58 -10.98 -0.08 5.25 16 25 O -0.54 -7.27 15.92 5.55 0.09 -7.18 16 26 C -0.20 -1.48 6.19 -91.78 -0.57 -2.05 16 27 C -0.15 -0.92 10.23 -26.75 -0.27 -1.20 16 28 C -0.15 -1.07 10.04 -26.76 -0.27 -1.34 16 29 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 30 H 0.10 1.67 8.14 -51.92 -0.42 1.25 16 31 H 0.10 1.70 8.14 -51.91 -0.42 1.28 16 32 H 0.40 3.51 7.66 -40.82 -0.31 3.20 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.73 7.60 -51.93 -0.39 0.33 16 35 H 0.06 0.36 6.50 -51.93 -0.34 0.02 16 36 H 0.07 0.43 7.18 -51.93 -0.37 0.05 16 37 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.06 0.37 7.60 -51.93 -0.39 -0.03 16 40 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.40 2.41 6.67 -40.82 -0.27 2.13 16 44 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 46 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 47 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.11 0.94 7.67 -51.93 -0.40 0.55 16 LS Contribution 397.39 15.07 5.99 5.99 Total: -1.00 -35.58 397.39 -10.02 -45.61 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -7.95 Total: 1.72 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: -1.79 Total: -6.36 kcal Atomic # 7 Polarization: -40.51 SS G_CDS: 0.26 Total: -40.25 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: 0.18 Total: -18.16 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.71 Total: 17.03 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.99 Total: -5.57 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.58 -10.02 -45.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001584401921.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.083 kcal (2) G-P(sol) polarization free energy of solvation -35.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds