Wall clock time and date at job start Tue Mar 31 2020 23:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31637 * 1 3 3 Si 1.86793 * 119.99550 * 2 1 4 4 H 1.48497 * 109.47247 * 270.00128 * 3 2 1 5 5 H 1.48501 * 109.47429 * 30.00597 * 3 2 1 6 6 H 1.48503 * 109.47242 * 150.00338 * 3 2 1 7 7 C 1.38793 * 120.00153 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00214 * 359.97438 * 7 2 1 9 9 S 1.76198 * 120.00094 * 179.97438 * 7 2 1 10 10 C 1.80998 * 100.00379 * 179.97438 * 9 7 2 11 11 C 1.50689 * 109.47327 * 180.02562 * 10 9 7 12 12 O 1.21286 * 120.00258 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00146 * 179.97438 * 11 10 9 14 14 C 1.46508 * 119.99954 * 180.02562 * 13 11 10 15 15 C 1.53004 * 109.46806 * 180.02562 * 14 13 11 16 16 H 1.09003 * 109.46904 * 304.99743 * 15 14 13 17 17 C 1.52998 * 109.47427 * 64.99504 * 15 14 13 18 18 C 1.53006 * 109.47063 * 179.97438 * 17 15 14 19 19 C 1.52999 * 109.47148 * 300.00349 * 18 17 15 20 20 C 1.53004 * 109.47194 * 59.99641 * 19 18 17 21 21 C 1.52997 * 109.47278 * 300.00130 * 20 19 18 22 22 H 1.09004 * 109.46812 * 180.02562 * 21 20 19 23 23 N 1.46498 * 109.47036 * 300.00073 * 21 20 19 24 24 C 1.34777 * 119.99828 * 274.72131 * 23 21 20 25 25 O 1.21283 * 120.00222 * 0.28168 * 24 23 21 26 26 C 1.50703 * 120.00290 * 180.27728 * 24 23 21 27 27 C 1.52998 * 117.49753 * 248.62813 * 26 24 23 28 28 C 1.52992 * 117.50304 * 180.02562 * 26 24 23 29 29 H 0.96991 * 120.00309 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.47085 * 59.99751 * 10 9 7 31 31 H 1.09002 * 109.47019 * 300.00162 * 10 9 7 32 32 H 0.96995 * 120.00107 * 359.97438 * 13 11 10 33 33 H 1.08995 * 109.47059 * 60.00227 * 14 13 11 34 34 H 1.09000 * 109.46777 * 299.99098 * 14 13 11 35 35 H 1.09003 * 109.46883 * 60.00227 * 17 15 14 36 36 H 1.08997 * 109.47266 * 300.00280 * 17 15 14 37 37 H 1.08995 * 109.47185 * 180.02562 * 18 17 15 38 38 H 1.09003 * 109.47067 * 60.00362 * 18 17 15 39 39 H 1.09003 * 109.47147 * 299.99964 * 19 18 17 40 40 H 1.09000 * 109.47204 * 179.97438 * 19 18 17 41 41 H 1.08997 * 109.47037 * 179.97438 * 20 19 18 42 42 H 1.09003 * 109.46809 * 60.00116 * 20 19 18 43 43 H 0.97001 * 120.00384 * 95.00578 * 23 21 20 44 44 H 1.09001 * 115.54758 * 34.32883 * 26 24 23 45 45 H 1.08998 * 117.50110 * 359.97438 * 27 26 24 46 46 H 1.09004 * 117.49475 * 145.02172 * 27 26 24 47 47 H 1.09000 * 117.49979 * 214.98118 * 28 26 24 48 48 H 1.09007 * 117.49555 * 0.02562 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4403 0.7000 7 6 2.0104 -1.2020 -0.0005 8 1 1.4704 -2.1374 -0.0005 9 16 3.7723 -1.2019 -0.0012 10 6 4.0868 -2.9844 -0.0009 11 6 5.5731 -3.2323 -0.0008 12 8 6.3441 -2.2961 -0.0005 13 7 6.0459 -4.4945 -0.0001 14 6 7.4910 -4.7354 0.0006 15 6 7.7567 -6.2422 0.0007 16 1 7.2389 -6.7024 0.8423 17 6 7.2454 -6.8504 -1.3068 18 6 7.5118 -8.3571 -1.3069 19 6 9.0156 -8.6092 -1.1808 20 6 9.5268 -8.0009 0.1268 21 6 9.2605 -6.4943 0.1268 22 1 9.6251 -6.0610 1.0582 23 7 9.9559 -5.8755 -1.0044 24 6 11.2478 -5.5110 -0.8835 25 8 11.8361 -5.7000 0.1601 26 6 11.9615 -4.8687 -2.0451 27 6 13.0682 -5.6752 -2.7276 28 6 13.4272 -4.4784 -1.8453 29 1 -0.4850 0.8399 0.0004 30 1 3.6435 -3.4317 -0.8906 31 1 3.6442 -3.4313 0.8893 32 1 5.4293 -5.2433 0.0007 33 1 7.9335 -4.2880 0.8905 34 1 7.9342 -4.2889 -0.8895 35 1 7.7632 -6.3903 -2.1484 36 1 6.1742 -6.6704 -1.3969 37 1 7.1480 -8.7903 -2.2385 38 1 6.9943 -8.8176 -0.4652 39 1 9.5330 -8.1487 -2.0224 40 1 9.2053 -9.6826 -1.1804 41 1 10.5980 -8.1809 0.2168 42 1 9.0094 -8.4614 0.9684 43 1 9.4854 -5.7243 -1.8391 44 1 11.3492 -4.2218 -2.6734 45 1 13.2804 -6.6701 -2.3362 46 1 13.1842 -5.5588 -3.8052 47 1 13.7795 -3.5744 -2.3422 48 1 13.8755 -4.6865 -0.8738 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001584401921.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:52 Heat of formation + Delta-G solvation = -96.402001 kcal Electronic energy + Delta-G solvation = -27209.249259 eV Core-core repulsion = 23389.026472 eV Total energy + Delta-G solvation = -3820.222787 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.64558 -40.63006 -39.51610 -37.00353 -35.92829 -34.70476 -34.66767 -32.62285 -31.05570 -30.53366 -27.87450 -26.61059 -25.45981 -23.46736 -23.28737 -22.47521 -21.83025 -21.28884 -20.09683 -19.86622 -18.61416 -17.87384 -17.41015 -17.06508 -16.89110 -16.69173 -16.31502 -16.14935 -15.68532 -15.57254 -15.31801 -15.13719 -14.91942 -14.71981 -14.62812 -14.22908 -13.61095 -13.53755 -13.42658 -13.32631 -13.14113 -13.02300 -12.89089 -12.81966 -12.62535 -12.45714 -12.01772 -11.87366 -11.56845 -11.48215 -11.41643 -11.37368 -11.16945 -11.09247 -10.98283 -10.87803 -10.52622 -10.19228 -10.00894 -8.99202 -8.51366 -6.21894 0.99518 1.31097 1.47020 1.48351 1.56011 1.56990 2.14972 2.21324 2.26115 2.72328 2.86900 2.91232 3.55632 3.57882 3.71075 3.75781 3.86917 3.89884 3.97731 4.12987 4.20718 4.22508 4.24346 4.28099 4.39663 4.48175 4.49200 4.58339 4.63625 4.72080 4.72790 4.86563 4.89792 4.97661 5.02167 5.10996 5.18020 5.20595 5.21379 5.32087 5.38424 5.39314 5.49127 5.57778 5.71109 6.11914 6.46499 6.52041 6.94079 7.19890 7.23346 8.60886 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015559 B = 0.002262 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.129746 B =12376.774180 C =13671.132798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.045 3.955 3 Si 0.914 3.086 4 H -0.262 1.262 5 H -0.260 1.260 6 H -0.238 1.238 7 C -0.527 4.527 8 H 0.064 0.936 9 S -0.179 6.179 10 C -0.110 4.110 11 C 0.534 3.466 12 O -0.565 6.565 13 N -0.707 5.707 14 C 0.129 3.871 15 C -0.091 4.091 16 H 0.109 0.891 17 C -0.116 4.116 18 C -0.114 4.114 19 C -0.114 4.114 20 C -0.123 4.123 21 C 0.156 3.844 22 H 0.067 0.933 23 N -0.707 5.707 24 C 0.538 3.462 25 O -0.586 6.586 26 C -0.206 4.206 27 C -0.135 4.135 28 C -0.158 4.158 29 H 0.277 0.723 30 H 0.116 0.884 31 H 0.114 0.886 32 H 0.418 0.582 33 H 0.048 0.952 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.048 0.952 42 H 0.083 0.917 43 H 0.411 0.589 44 H 0.143 0.857 45 H 0.091 0.909 46 H 0.129 0.871 47 H 0.120 0.880 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.552 -21.245 -6.783 31.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.161 4.161 3 Si 0.736 3.264 4 H -0.186 1.186 5 H -0.185 1.185 6 H -0.162 1.162 7 C -0.674 4.674 8 H 0.082 0.918 9 S 0.047 5.953 10 C -0.261 4.261 11 C 0.319 3.681 12 O -0.443 6.443 13 N -0.361 5.361 14 C 0.005 3.995 15 C -0.110 4.110 16 H 0.127 0.873 17 C -0.154 4.154 18 C -0.152 4.152 19 C -0.152 4.152 20 C -0.161 4.161 21 C 0.050 3.950 22 H 0.085 0.915 23 N -0.359 5.359 24 C 0.326 3.674 25 O -0.466 6.466 26 C -0.227 4.227 27 C -0.172 4.172 28 C -0.196 4.196 29 H 0.086 0.914 30 H 0.135 0.865 31 H 0.132 0.868 32 H 0.255 0.745 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.067 0.933 42 H 0.101 0.899 43 H 0.249 0.751 44 H 0.160 0.840 45 H 0.110 0.890 46 H 0.148 0.852 47 H 0.139 0.861 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 24.050 -19.771 -6.038 31.714 hybrid contribution -1.610 -0.330 -0.051 1.644 sum 22.440 -20.101 -6.088 30.736 Atomic orbital electron populations 1.70013 1.07246 1.28988 1.49211 1.25556 0.95276 1.02227 0.92992 0.85874 0.80641 0.79703 0.80205 1.18649 1.18463 1.16198 1.22455 0.90203 0.96689 1.58088 0.91799 1.84763 1.06471 1.06448 1.97590 1.23265 0.95829 0.99457 1.07586 1.19980 0.89399 0.83425 0.75271 1.90703 1.59397 1.43986 1.50252 1.45685 1.08458 1.06730 1.75269 1.21360 0.80095 0.96512 1.01536 1.21610 0.94794 0.92959 1.01645 0.87291 1.21650 1.01965 0.96128 0.95621 1.21519 0.95611 0.95090 1.02958 1.21480 0.96266 1.00666 0.96744 1.21836 1.00827 0.93741 0.99703 1.20844 0.90723 0.93817 0.89581 0.91465 1.45984 1.11198 1.61647 1.17074 1.20123 0.82107 0.76882 0.88254 1.90674 1.67338 1.57234 1.31386 1.22308 0.93334 1.06738 1.00320 1.23000 0.97801 0.96123 1.00291 1.22982 0.93998 1.00642 1.01950 0.91394 0.86545 0.86829 0.74465 0.93400 0.91963 0.91496 0.90357 0.90857 0.91002 0.92127 0.91415 0.93291 0.89870 0.75126 0.83954 0.89037 0.85244 0.86139 0.89624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.41 13.97 21.65 0.30 -55.11 16 2 C 0.04 2.62 5.50 84.85 0.47 3.08 16 3 Si 0.91 44.84 27.74 68.60 1.90 46.74 16 4 H -0.26 -12.51 7.11 99.48 0.71 -11.80 16 5 H -0.26 -12.01 7.11 99.48 0.71 -11.31 16 6 H -0.24 -11.71 6.74 99.48 0.67 -11.04 16 7 C -0.53 -30.27 10.04 67.95 0.68 -29.59 16 8 H 0.06 3.85 8.03 -2.91 -0.02 3.83 16 9 S -0.18 -8.93 18.55 -56.49 -1.05 -9.98 16 10 C -0.11 -3.97 6.16 71.23 0.44 -3.53 16 11 C 0.53 17.45 7.85 87.65 0.69 18.14 16 12 O -0.56 -23.75 15.86 -3.05 -0.05 -23.79 16 13 N -0.71 -14.79 5.28 -463.05 -2.45 -17.23 16 14 C 0.13 2.44 4.83 86.38 0.42 2.86 16 15 C -0.09 -1.04 2.02 -10.79 -0.02 -1.06 16 16 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 17 C -0.12 -0.97 4.91 30.60 0.15 -0.82 16 18 C -0.11 -0.80 5.92 30.60 0.18 -0.62 16 19 C -0.11 -1.02 5.77 30.60 0.18 -0.84 16 20 C -0.12 -1.52 5.61 30.59 0.17 -1.34 16 21 C 0.16 2.26 2.23 44.99 0.10 2.36 16 22 H 0.07 1.35 7.57 -2.39 -0.02 1.33 16 23 N -0.71 -10.20 3.61 -442.53 -1.60 -11.80 16 24 C 0.54 10.61 7.58 87.66 0.66 11.27 16 25 O -0.59 -16.55 15.92 -3.04 -0.05 -16.60 16 26 C -0.21 -2.90 6.19 -11.54 -0.07 -2.97 16 27 C -0.13 -1.43 10.23 30.58 0.31 -1.12 16 28 C -0.16 -2.24 10.04 30.58 0.31 -1.93 16 29 H 0.28 15.48 8.31 -92.71 -0.77 14.71 16 30 H 0.12 3.75 8.14 -2.40 -0.02 3.74 16 31 H 0.11 3.74 8.14 -2.39 -0.02 3.72 16 32 H 0.42 5.83 7.66 -92.71 -0.71 5.12 16 33 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.06 1.28 7.60 -2.39 -0.02 1.26 16 35 H 0.07 0.54 6.50 -2.39 -0.02 0.53 16 36 H 0.08 0.61 7.18 -2.39 -0.02 0.59 16 37 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 39 H 0.06 0.57 7.60 -2.39 -0.02 0.56 16 40 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 41 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.41 4.24 6.67 -92.71 -0.62 3.62 16 44 H 0.14 1.45 8.14 -2.39 -0.02 1.44 16 45 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.13 0.73 8.14 -2.38 -0.02 0.72 16 47 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 48 H 0.09 1.60 7.67 -2.38 -0.02 1.58 16 Total: -1.00 -79.09 397.39 1.28 -77.81 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -0.40 Total: 16.08 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: 4.66 Total: -6.12 kcal Atomic # 7 Polarization: -80.40 SS G_CDS: -3.74 Total: -84.15 kcal Atomic # 8 Polarization: -40.30 SS G_CDS: -0.10 Total: -40.39 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 1.90 Total: 46.74 kcal Atomic # 16 Polarization: -8.93 SS G_CDS: -1.05 Total: -9.98 kcal Total: -79.09 1.28 -77.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001584401921.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.592 kcal (2) G-P(sol) polarization free energy of solvation -79.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds