Wall clock time and date at job start Tue Mar 31 2020 22:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86804 * 119.99734 * 2 1 4 4 H 1.48504 * 109.46687 * 239.99773 * 3 2 1 5 5 H 1.48498 * 109.46941 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46927 * 119.99775 * 3 2 1 7 7 C 1.38798 * 120.00009 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99975 * 180.02562 * 7 2 1 9 9 S 1.76197 * 120.00113 * 359.97438 * 7 2 1 10 10 C 1.81006 * 99.99982 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.46998 * 180.02562 * 10 9 7 12 12 O 1.21278 * 120.00211 * 5.07041 * 11 10 9 13 13 N 1.34784 * 119.99881 * 185.07326 * 11 10 9 14 14 C 1.46490 * 120.00035 * 185.00127 * 13 11 10 15 15 C 1.52997 * 109.47359 * 184.86977 * 14 13 11 16 16 N 1.46506 * 115.54873 * 325.28020 * 15 14 13 17 17 C 1.34781 * 119.99792 * 294.48802 * 16 15 14 18 18 O 1.21284 * 120.00155 * 5.00750 * 17 16 15 19 19 C 1.50698 * 120.00207 * 185.00634 * 17 16 15 20 20 C 1.52991 * 109.47235 * 184.82219 * 19 17 16 21 21 C 1.55241 * 110.47021 * 288.87037 * 20 19 17 22 22 C 1.54888 * 102.58818 * 203.39788 * 21 20 19 23 23 C 1.54260 * 104.31606 * 37.93079 * 22 21 20 24 24 C 1.53879 * 106.59921 * 336.32625 * 23 22 21 25 25 C 1.52997 * 117.50181 * 110.94863 * 15 14 13 26 26 C 1.53001 * 117.50165 * 179.60861 * 15 14 13 27 27 H 0.96992 * 119.99978 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46876 * 60.00146 * 10 9 7 29 29 H 1.08996 * 109.46992 * 300.00484 * 10 9 7 30 30 H 0.97006 * 119.99426 * 4.99886 * 13 11 10 31 31 H 1.09007 * 109.46921 * 64.86931 * 14 13 11 32 32 H 1.09001 * 109.47476 * 304.87088 * 14 13 11 33 33 H 0.96996 * 120.00480 * 114.48743 * 16 15 14 34 34 H 1.08994 * 109.46953 * 64.81881 * 19 17 16 35 35 H 1.09004 * 109.47083 * 304.82365 * 19 17 16 36 36 H 1.08999 * 110.43721 * 51.52213 * 20 19 17 37 37 H 1.08998 * 110.89165 * 85.10417 * 21 20 19 38 38 H 1.09005 * 110.76461 * 321.62822 * 21 20 19 39 39 H 1.09005 * 110.48641 * 279.18281 * 22 21 20 40 40 H 1.08999 * 110.48327 * 156.68104 * 22 21 20 41 41 H 1.09000 * 110.02995 * 95.60828 * 23 22 21 42 42 H 1.08995 * 110.03667 * 216.99004 * 23 22 21 43 43 H 1.09000 * 110.03533 * 119.28440 * 24 23 22 44 44 H 1.09002 * 110.02664 * 240.71547 * 24 23 22 45 45 H 1.09002 * 117.49990 * 215.00495 * 25 15 14 46 46 H 1.08999 * 117.49491 * 0.02562 * 25 15 14 47 47 H 1.08997 * 117.49674 * 359.97438 * 26 15 14 48 48 H 1.09004 * 117.49622 * 144.97265 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1294 -2.7280 0.0019 10 6 2.5160 -3.8914 0.0013 11 6 1.9875 -5.3027 0.0018 12 8 0.7951 -5.5038 -0.0905 13 7 2.8401 -6.3415 0.1047 14 6 2.3393 -7.7138 -0.0049 15 6 3.4801 -8.6963 0.2668 16 7 4.8029 -8.2733 -0.1997 17 6 5.0399 -8.1359 -1.5194 18 8 4.1354 -8.2736 -2.3156 19 6 6.4287 -7.8110 -2.0058 20 6 6.4008 -7.5923 -3.5197 21 6 6.1721 -8.9383 -4.2586 22 6 6.7649 -8.6582 -5.6618 23 6 8.0102 -7.7913 -5.3836 24 6 7.7788 -7.1136 -4.0216 25 6 3.4149 -9.5153 1.5574 26 6 3.1549 -10.1902 0.2084 27 1 -0.4850 0.8400 -0.0004 28 1 3.1253 -3.7309 0.8908 29 1 3.1239 -3.7316 -0.8891 30 1 3.7854 -6.1804 0.2513 31 1 1.9489 -7.8790 -1.0092 32 1 1.5442 -7.8697 0.7242 33 1 5.5082 -8.0921 0.4411 34 1 7.0988 -8.6378 -1.7704 35 1 6.7832 -6.9049 -1.5143 36 1 5.6267 -6.8727 -3.7861 37 1 5.1088 -9.1683 -4.3272 38 1 6.7122 -9.7465 -3.7653 39 1 6.0492 -8.1118 -6.2762 40 1 7.0502 -9.5908 -6.1485 41 1 8.9003 -8.4190 -5.3418 42 1 8.1218 -7.0371 -6.1626 43 1 8.5566 -7.4124 -3.3189 44 1 7.7775 -6.0299 -4.1393 45 1 4.3561 -9.7394 2.0595 46 1 2.5589 -9.3544 2.2128 47 1 2.1281 -10.4730 -0.0231 48 1 3.9250 -10.8582 -0.1775 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001584879366.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:47 Heat of formation + Delta-G solvation = -68.418048 kcal Electronic energy + Delta-G solvation = -27178.265749 eV Core-core repulsion = 23359.256437 eV Total energy + Delta-G solvation = -3819.009311 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.55511 -39.12283 -38.33214 -37.27073 -33.89299 -33.30316 -32.40792 -31.61794 -29.70713 -28.89319 -26.58725 -26.02062 -25.37316 -22.97611 -21.80550 -20.72582 -20.27598 -19.94608 -19.91997 -17.90162 -17.44298 -16.93626 -16.31347 -15.95624 -15.63834 -15.23351 -15.12204 -14.92476 -14.78727 -14.64955 -14.07290 -13.86044 -13.57986 -13.43643 -13.28413 -13.09321 -12.62515 -12.52019 -12.31356 -11.92437 -11.75382 -11.61453 -11.33218 -11.32520 -11.18151 -11.02740 -11.02550 -10.96850 -10.81332 -10.75263 -10.66276 -10.59368 -9.87478 -9.81135 -9.42086 -9.27951 -9.04248 -8.75575 -8.21121 -6.47214 -6.19388 -3.89753 2.43906 2.67941 3.06397 3.16285 3.24549 3.27646 3.30171 3.38785 3.77645 4.21667 4.22567 4.31370 4.34672 4.43776 4.48469 4.59346 4.72900 4.89791 5.00333 5.14993 5.15429 5.19588 5.21593 5.26455 5.30505 5.37121 5.43771 5.48240 5.53032 5.55150 5.57255 5.69341 5.71064 5.74124 5.76025 5.87327 5.87859 5.94624 6.03694 6.11961 6.16176 6.23788 6.24296 6.69230 7.19272 7.60953 7.77290 8.03177 8.36937 8.67590 9.25508 10.88032 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009332 B = 0.002771 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2999.754637 B =10101.573102 C =12376.429774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.071 0.929 9 S -0.059 6.059 10 C -0.152 4.152 11 C 0.532 3.468 12 O -0.518 6.518 13 N -0.731 5.731 14 C 0.157 3.843 15 C 0.091 3.909 16 N -0.708 5.708 17 C 0.514 3.486 18 O -0.514 6.514 19 C -0.133 4.133 20 C -0.078 4.078 21 C -0.116 4.116 22 C -0.127 4.127 23 C -0.124 4.124 24 C -0.122 4.122 25 C -0.168 4.168 26 C -0.164 4.164 27 H 0.269 0.731 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.394 0.606 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.402 0.598 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.065 0.935 45 H 0.100 0.900 46 H 0.109 0.891 47 H 0.105 0.895 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.664 -22.271 -1.982 29.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.168 5.832 10 C -0.302 4.302 11 C 0.318 3.682 12 O -0.392 6.392 13 N -0.385 5.385 14 C 0.031 3.969 15 C 0.003 3.997 16 N -0.361 5.361 17 C 0.300 3.700 18 O -0.388 6.388 19 C -0.173 4.173 20 C -0.097 4.097 21 C -0.153 4.153 22 C -0.165 4.165 23 C -0.162 4.162 24 C -0.160 4.160 25 C -0.205 4.205 26 C -0.202 4.202 27 H 0.079 0.921 28 H 0.104 0.896 29 H 0.107 0.893 30 H 0.228 0.772 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.237 0.763 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.119 0.881 46 H 0.127 0.873 47 H 0.124 0.876 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 15.840 -22.604 -2.682 27.731 hybrid contribution 2.927 1.413 0.473 3.284 sum 18.766 -21.191 -2.210 28.392 Atomic orbital electron populations 1.70009 1.05945 1.27544 1.46803 1.24991 0.95025 0.98996 0.94567 0.86228 0.79241 0.81277 0.78772 1.19939 1.20807 1.19960 1.22825 0.94853 0.91712 1.59010 0.91033 1.85398 1.04912 0.96213 1.96692 1.23512 1.06517 0.95498 1.04702 1.20269 0.86417 0.86216 0.75277 1.90698 1.15475 1.85537 1.47519 1.45790 1.11287 1.05189 1.76264 1.20951 0.93280 0.79867 1.02790 1.20814 0.85039 0.92461 1.01409 1.45455 1.12233 1.70956 1.07501 1.20802 0.91100 0.76310 0.81745 1.90735 1.45907 1.48106 1.54031 1.21773 0.94032 1.03605 0.97925 1.21836 0.97607 0.98471 0.91757 1.22611 1.01736 0.96143 0.94839 1.22365 0.97134 0.99418 0.97533 1.22115 0.98132 0.98856 0.97083 1.22218 0.96563 1.00437 0.96734 1.23462 1.04184 1.02159 0.90734 1.23329 1.03653 0.93801 0.99446 0.92135 0.89575 0.89251 0.77213 0.90441 0.90531 0.76311 0.88845 0.88896 0.89684 0.90386 0.92207 0.91584 0.91996 0.92092 0.91950 0.91804 0.91603 0.88148 0.87279 0.87648 0.88318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.47 13.22 55.49 0.73 -25.74 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.56 29.55 -169.99 -5.02 16.54 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.54 -15.47 9.50 30.94 0.29 -15.17 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 9 S -0.06 -1.63 20.58 -107.50 -2.21 -3.84 16 10 C -0.15 -3.18 6.16 36.01 0.22 -2.96 16 11 C 0.53 10.52 7.84 -10.98 -0.09 10.44 16 12 O -0.52 -12.34 15.86 5.56 0.09 -12.25 16 13 N -0.73 -10.65 5.46 -60.30 -0.33 -10.98 16 14 C 0.16 2.06 5.31 -4.05 -0.02 2.04 16 15 C 0.09 0.83 2.09 -131.82 -0.28 0.55 16 16 N -0.71 -5.37 4.28 -47.60 -0.20 -5.57 16 17 C 0.51 4.97 7.58 -10.98 -0.08 4.88 16 18 O -0.51 -7.16 13.88 5.55 0.08 -7.08 16 19 C -0.13 -0.91 5.05 -27.89 -0.14 -1.06 16 20 C -0.08 -0.67 2.45 -88.77 -0.22 -0.89 16 21 C -0.12 -1.02 5.77 -24.55 -0.14 -1.16 16 22 C -0.13 -1.01 6.82 -25.08 -0.17 -1.19 16 23 C -0.12 -0.89 6.80 -25.61 -0.17 -1.06 16 24 C -0.12 -0.87 6.37 -25.61 -0.16 -1.04 16 25 C -0.17 -1.13 10.11 -26.70 -0.27 -1.40 16 26 C -0.16 -1.29 10.18 -26.69 -0.27 -1.57 16 27 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 28 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 29 H 0.09 1.78 8.14 -51.92 -0.42 1.36 16 30 H 0.39 4.69 7.59 -40.82 -0.31 4.38 16 31 H 0.08 1.22 7.75 -51.92 -0.40 0.82 16 32 H 0.08 1.02 7.86 -51.93 -0.41 0.61 16 33 H 0.40 1.84 8.83 -40.82 -0.36 1.48 16 34 H 0.09 0.46 8.00 -51.93 -0.42 0.05 16 35 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.94 7.94 -51.93 -0.41 0.53 16 37 H 0.08 0.86 7.23 -51.93 -0.38 0.49 16 38 H 0.06 0.47 7.96 -51.93 -0.41 0.06 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.38 7.84 -51.93 -0.41 -0.03 16 44 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.11 0.73 8.05 -51.93 -0.42 0.32 16 47 H 0.11 0.84 8.14 -51.93 -0.42 0.41 16 48 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 406.40 15.07 6.12 6.12 Total: -1.00 -36.55 406.40 -10.46 -47.01 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -8.12 Total: 3.35 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: -1.60 Total: -7.56 kcal Atomic # 7 Polarization: -42.48 SS G_CDS: 0.20 Total: -42.28 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: 0.17 Total: -19.34 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -36.55 -10.46 -47.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001584879366.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.408 kcal (2) G-P(sol) polarization free energy of solvation -36.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds