Wall clock time and date at job start Tue Mar 31 2020 22:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86804 * 119.99734 * 2 1 4 4 H 1.48504 * 109.46687 * 239.99773 * 3 2 1 5 5 H 1.48498 * 109.46941 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46927 * 119.99775 * 3 2 1 7 7 C 1.38798 * 120.00009 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99975 * 180.02562 * 7 2 1 9 9 S 1.76197 * 120.00113 * 359.97438 * 7 2 1 10 10 C 1.81006 * 99.99982 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.46998 * 180.02562 * 10 9 7 12 12 O 1.21278 * 120.00211 * 5.07041 * 11 10 9 13 13 N 1.34784 * 119.99881 * 185.07326 * 11 10 9 14 14 C 1.46490 * 120.00035 * 185.00127 * 13 11 10 15 15 C 1.52997 * 109.47359 * 184.86977 * 14 13 11 16 16 N 1.46506 * 115.54873 * 325.28020 * 15 14 13 17 17 C 1.34781 * 119.99792 * 294.48802 * 16 15 14 18 18 O 1.21284 * 120.00155 * 5.00750 * 17 16 15 19 19 C 1.50698 * 120.00207 * 185.00634 * 17 16 15 20 20 C 1.52991 * 109.47235 * 184.82219 * 19 17 16 21 21 C 1.55241 * 110.47021 * 288.87037 * 20 19 17 22 22 C 1.54888 * 102.58818 * 203.39788 * 21 20 19 23 23 C 1.54260 * 104.31606 * 37.93079 * 22 21 20 24 24 C 1.53879 * 106.59921 * 336.32625 * 23 22 21 25 25 C 1.52997 * 117.50181 * 110.94863 * 15 14 13 26 26 C 1.53001 * 117.50165 * 179.60861 * 15 14 13 27 27 H 0.96992 * 119.99978 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46876 * 60.00146 * 10 9 7 29 29 H 1.08996 * 109.46992 * 300.00484 * 10 9 7 30 30 H 0.97006 * 119.99426 * 4.99886 * 13 11 10 31 31 H 1.09007 * 109.46921 * 64.86931 * 14 13 11 32 32 H 1.09001 * 109.47476 * 304.87088 * 14 13 11 33 33 H 0.96996 * 120.00480 * 114.48743 * 16 15 14 34 34 H 1.08994 * 109.46953 * 64.81881 * 19 17 16 35 35 H 1.09004 * 109.47083 * 304.82365 * 19 17 16 36 36 H 1.08999 * 110.43721 * 51.52213 * 20 19 17 37 37 H 1.08998 * 110.89165 * 85.10417 * 21 20 19 38 38 H 1.09005 * 110.76461 * 321.62822 * 21 20 19 39 39 H 1.09005 * 110.48641 * 279.18281 * 22 21 20 40 40 H 1.08999 * 110.48327 * 156.68104 * 22 21 20 41 41 H 1.09000 * 110.02995 * 95.60828 * 23 22 21 42 42 H 1.08995 * 110.03667 * 216.99004 * 23 22 21 43 43 H 1.09000 * 110.03533 * 119.28440 * 24 23 22 44 44 H 1.09002 * 110.02664 * 240.71547 * 24 23 22 45 45 H 1.09002 * 117.49990 * 215.00495 * 25 15 14 46 46 H 1.08999 * 117.49491 * 0.02562 * 25 15 14 47 47 H 1.08997 * 117.49674 * 359.97438 * 26 15 14 48 48 H 1.09004 * 117.49622 * 144.97265 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1294 -2.7280 0.0019 10 6 2.5160 -3.8914 0.0013 11 6 1.9875 -5.3027 0.0018 12 8 0.7951 -5.5038 -0.0905 13 7 2.8401 -6.3415 0.1047 14 6 2.3393 -7.7138 -0.0049 15 6 3.4801 -8.6963 0.2668 16 7 4.8029 -8.2733 -0.1997 17 6 5.0399 -8.1359 -1.5194 18 8 4.1354 -8.2736 -2.3156 19 6 6.4287 -7.8110 -2.0058 20 6 6.4008 -7.5923 -3.5197 21 6 6.1721 -8.9383 -4.2586 22 6 6.7649 -8.6582 -5.6618 23 6 8.0102 -7.7913 -5.3836 24 6 7.7788 -7.1136 -4.0216 25 6 3.4149 -9.5153 1.5574 26 6 3.1549 -10.1902 0.2084 27 1 -0.4850 0.8400 -0.0004 28 1 3.1253 -3.7309 0.8908 29 1 3.1239 -3.7316 -0.8891 30 1 3.7854 -6.1804 0.2513 31 1 1.9489 -7.8790 -1.0092 32 1 1.5442 -7.8697 0.7242 33 1 5.5082 -8.0921 0.4411 34 1 7.0988 -8.6378 -1.7704 35 1 6.7832 -6.9049 -1.5143 36 1 5.6267 -6.8727 -3.7861 37 1 5.1088 -9.1683 -4.3272 38 1 6.7122 -9.7465 -3.7653 39 1 6.0492 -8.1118 -6.2762 40 1 7.0502 -9.5908 -6.1485 41 1 8.9003 -8.4190 -5.3418 42 1 8.1218 -7.0371 -6.1626 43 1 8.5566 -7.4124 -3.3189 44 1 7.7775 -6.0299 -4.1393 45 1 4.3561 -9.7394 2.0595 46 1 2.5589 -9.3544 2.2128 47 1 2.1281 -10.4730 -0.0231 48 1 3.9250 -10.8582 -0.1775 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001584879366.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:46 Heat of formation + Delta-G solvation = -93.504158 kcal Electronic energy + Delta-G solvation = -27179.353564 eV Core-core repulsion = 23359.256437 eV Total energy + Delta-G solvation = -3820.097127 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.39798 -40.44562 -39.16876 -38.04671 -35.28480 -34.59236 -34.04132 -32.22459 -31.31419 -29.50914 -27.90844 -27.38595 -26.76213 -23.58547 -22.51339 -21.81420 -21.36236 -20.75642 -20.56158 -19.83399 -18.22744 -17.98781 -17.78876 -16.88918 -16.77730 -16.63934 -16.40670 -16.20736 -15.75266 -15.57908 -15.45513 -14.84688 -14.67181 -14.59499 -14.37437 -14.20086 -14.05816 -13.50576 -13.39429 -13.18484 -12.89449 -12.86701 -12.64068 -12.42921 -12.21711 -12.01741 -11.94326 -11.84274 -11.75682 -11.63755 -11.46819 -11.39412 -11.22415 -11.13582 -11.02350 -10.69211 -10.30901 -10.10993 -10.05183 -8.69107 -8.35169 -6.14284 1.24109 1.43873 1.45130 1.54541 1.56119 1.71182 1.99790 2.25932 2.28230 2.72478 2.98786 3.30254 3.49360 3.65500 3.71277 3.82368 3.83988 3.86626 3.98609 4.09169 4.23594 4.33533 4.43965 4.45312 4.51115 4.57636 4.60417 4.64577 4.71258 4.74616 4.76721 4.85726 4.89566 4.97328 4.98424 5.12106 5.13867 5.18201 5.26270 5.30270 5.36154 5.40347 5.52829 5.56256 5.59542 6.18725 6.42804 6.60232 7.05474 7.17573 7.36773 8.74012 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009332 B = 0.002771 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2999.754637 B =10101.573102 C =12376.429774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 1.000 3.000 4 H -0.263 1.263 5 H -0.279 1.279 6 H -0.259 1.259 7 C -0.547 4.547 8 H 0.084 0.916 9 S -0.151 6.151 10 C -0.126 4.126 11 C 0.532 3.468 12 O -0.566 6.566 13 N -0.703 5.703 14 C 0.158 3.842 15 C 0.072 3.928 16 N -0.692 5.692 17 C 0.508 3.492 18 O -0.565 6.565 19 C -0.126 4.126 20 C -0.080 4.080 21 C -0.114 4.114 22 C -0.130 4.130 23 C -0.123 4.123 24 C -0.117 4.117 25 C -0.138 4.138 26 C -0.165 4.165 27 H 0.271 0.729 28 H 0.113 0.887 29 H 0.103 0.897 30 H 0.411 0.589 31 H 0.044 0.956 32 H 0.073 0.927 33 H 0.421 0.579 34 H 0.124 0.876 35 H 0.116 0.884 36 H 0.048 0.952 37 H 0.046 0.954 38 H 0.075 0.925 39 H 0.049 0.951 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.060 0.940 43 H 0.087 0.913 44 H 0.061 0.939 45 H 0.129 0.871 46 H 0.110 0.890 47 H 0.098 0.902 48 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.903 -22.756 -0.472 32.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.822 3.178 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.183 1.183 7 C -0.695 4.695 8 H 0.102 0.898 9 S 0.077 5.923 10 C -0.278 4.278 11 C 0.317 3.683 12 O -0.445 6.445 13 N -0.357 5.357 14 C 0.032 3.968 15 C -0.016 4.016 16 N -0.346 5.346 17 C 0.296 3.704 18 O -0.443 6.443 19 C -0.166 4.166 20 C -0.099 4.099 21 C -0.151 4.151 22 C -0.167 4.167 23 C -0.161 4.161 24 C -0.155 4.155 25 C -0.175 4.175 26 C -0.204 4.204 27 H 0.080 0.920 28 H 0.132 0.868 29 H 0.121 0.879 30 H 0.247 0.753 31 H 0.062 0.938 32 H 0.091 0.909 33 H 0.260 0.740 34 H 0.142 0.858 35 H 0.134 0.866 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.093 0.907 39 H 0.068 0.932 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.079 0.921 43 H 0.105 0.895 44 H 0.080 0.920 45 H 0.147 0.853 46 H 0.129 0.871 47 H 0.116 0.884 48 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 20.160 -23.123 -1.132 30.698 hybrid contribution 1.593 1.419 -0.030 2.133 sum 21.753 -21.704 -1.162 30.751 Atomic orbital electron populations 1.70183 1.08044 1.28730 1.47890 1.26168 0.95987 1.03412 0.93652 0.84979 0.77792 0.75494 0.79573 1.18728 1.20395 1.18345 1.23167 0.95361 0.91865 1.59095 0.89820 1.85608 1.10435 0.99262 1.97043 1.23335 1.03625 0.94221 1.06572 1.20128 0.86156 0.86772 0.75202 1.90684 1.17569 1.86081 1.50153 1.45511 1.11487 1.04836 1.73868 1.20953 0.95277 0.79664 1.00856 1.20587 0.84521 0.92096 1.04386 1.45317 1.11988 1.69984 1.07318 1.21405 0.91736 0.75316 0.81908 1.90739 1.47647 1.50444 1.55451 1.21808 0.92590 1.05765 0.96413 1.21783 0.97496 0.97322 0.93347 1.22552 0.99978 0.96911 0.95667 1.22381 0.97384 0.99960 0.96992 1.22130 0.97985 0.98841 0.97151 1.22202 0.96009 1.00144 0.97120 1.23562 1.05555 0.98770 0.89619 1.23377 1.03647 0.92679 1.00710 0.91958 0.86837 0.87893 0.75252 0.93771 0.90866 0.74045 0.85828 0.86634 0.93295 0.93533 0.90680 0.93222 0.91058 0.90531 0.92134 0.89483 0.92036 0.85285 0.87120 0.88388 0.87477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.82 13.22 21.65 0.29 -56.53 16 2 C 0.01 0.72 5.49 84.86 0.47 1.19 16 3 Si 1.00 43.81 29.55 68.60 2.03 45.84 16 4 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 5 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 6 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 7 C -0.55 -31.69 9.50 67.95 0.65 -31.04 16 8 H 0.08 4.46 7.80 -2.91 -0.02 4.44 16 9 S -0.15 -8.61 20.58 -56.49 -1.16 -9.77 16 10 C -0.13 -5.25 6.16 71.24 0.44 -4.81 16 11 C 0.53 21.23 7.84 87.66 0.69 21.92 16 12 O -0.57 -28.12 15.86 -3.02 -0.05 -28.17 16 13 N -0.70 -20.04 5.46 -463.07 -2.53 -22.56 16 14 C 0.16 4.18 5.31 86.38 0.46 4.64 16 15 C 0.07 1.21 2.09 3.60 0.01 1.21 16 16 N -0.69 -8.68 4.28 -422.91 -1.81 -10.50 16 17 C 0.51 9.11 7.58 87.66 0.66 9.78 16 18 O -0.57 -16.20 13.88 -3.04 -0.04 -16.25 16 19 C -0.13 -1.39 5.05 29.84 0.15 -1.24 16 20 C -0.08 -1.32 2.45 -9.60 -0.02 -1.34 16 21 C -0.11 -1.99 5.77 32.01 0.18 -1.80 16 22 C -0.13 -2.05 6.82 31.67 0.22 -1.83 16 23 C -0.12 -1.57 6.80 31.32 0.21 -1.35 16 24 C -0.12 -1.43 6.37 31.32 0.20 -1.23 16 25 C -0.14 -1.42 10.11 30.62 0.31 -1.11 16 26 C -0.17 -2.36 10.18 30.62 0.31 -2.04 16 27 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 28 H 0.11 4.09 8.14 -2.39 -0.02 4.07 16 29 H 0.10 4.00 8.14 -2.40 -0.02 3.98 16 30 H 0.41 8.89 7.59 -92.70 -0.70 8.19 16 31 H 0.04 1.48 7.75 -2.38 -0.02 1.47 16 32 H 0.07 1.99 7.86 -2.39 -0.02 1.97 16 33 H 0.42 2.10 8.83 -92.71 -0.82 1.28 16 34 H 0.12 0.67 8.00 -2.39 -0.02 0.65 16 35 H 0.12 0.79 8.14 -2.38 -0.02 0.77 16 36 H 0.05 1.15 7.94 -2.39 -0.02 1.13 16 37 H 0.05 1.10 7.23 -2.39 -0.02 1.09 16 38 H 0.07 1.06 7.96 -2.38 -0.02 1.04 16 39 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 40 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.09 0.68 7.84 -2.39 -0.02 0.67 16 44 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.13 0.66 8.14 -2.39 -0.02 0.64 16 46 H 0.11 1.18 8.05 -2.39 -0.02 1.16 16 47 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 48 H 0.11 1.37 8.14 -2.38 -0.02 1.35 16 Total: -1.00 -85.00 406.40 1.09 -83.91 By element: Atomic # 1 Polarization: 23.66 SS G_CDS: -0.56 Total: 23.11 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: 4.93 Total: -9.08 kcal Atomic # 7 Polarization: -85.54 SS G_CDS: -4.05 Total: -89.59 kcal Atomic # 8 Polarization: -44.32 SS G_CDS: -0.09 Total: -44.41 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 16 Polarization: -8.61 SS G_CDS: -1.16 Total: -9.77 kcal Total: -85.00 1.09 -83.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001584879366.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.594 kcal (2) G-P(sol) polarization free energy of solvation -85.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds