Wall clock time and date at job start Tue Mar 31 2020 22:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86805 * 119.99653 * 2 1 4 4 H 1.48498 * 109.47071 * 270.00103 * 3 2 1 5 5 H 1.48503 * 109.46870 * 30.00573 * 3 2 1 6 6 H 1.48503 * 109.46822 * 150.00148 * 3 2 1 7 7 C 1.38809 * 120.00370 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00153 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99948 * 359.97438 * 7 2 1 10 10 C 1.47145 * 125.58075 * 359.97438 * 9 7 2 11 11 C 1.54634 * 107.37763 * 179.10207 * 10 9 7 12 12 C 1.53502 * 102.70479 * 339.38576 * 11 10 9 13 13 C 1.51782 * 117.00216 * 164.16241 * 12 11 10 14 14 N 1.47389 * 87.51636 * 92.93048 * 13 12 11 15 15 C 1.34786 * 135.85329 * 205.66548 * 14 13 12 16 16 O 1.21284 * 119.99533 * 359.97438 * 15 14 13 17 17 C 1.50699 * 120.00035 * 180.02562 * 15 14 13 18 18 C 1.50704 * 109.46841 * 180.02562 * 17 15 14 19 19 C 1.33990 * 124.92202 * 89.99868 * 18 17 15 20 20 C 1.46787 * 106.18608 * 179.97438 * 19 18 17 21 21 C 1.39406 * 134.37016 * 180.02562 * 20 19 18 22 22 C 1.36736 * 119.71514 * 180.02562 * 21 20 19 23 23 C 1.38743 * 120.41735 * 359.95255 * 22 21 20 24 24 C 1.37855 * 120.68498 * 0.02562 * 23 22 21 25 25 C 1.38944 * 119.81775 * 0.02562 * 24 23 22 26 26 O 1.34443 * 124.92335 * 269.97229 * 18 17 15 27 27 C 1.47386 * 88.29585 * 25.92189 * 14 13 12 28 28 C 1.47758 * 125.58278 * 179.97438 * 9 7 2 29 29 H 0.96992 * 120.00678 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.86555 * 59.65809 * 10 9 7 31 31 H 1.08995 * 109.86909 * 298.55444 * 10 9 7 32 32 H 1.09004 * 110.76512 * 221.07598 * 11 10 9 33 33 H 1.08998 * 110.75897 * 97.69025 * 11 10 9 34 34 H 1.08996 * 113.54217 * 338.26758 * 13 12 11 35 35 H 1.08998 * 113.61079 * 207.59619 * 13 12 11 36 36 H 1.08996 * 109.47045 * 60.00282 * 17 15 14 37 37 H 1.09003 * 109.47090 * 299.99721 * 17 15 14 38 38 H 1.08003 * 126.91279 * 359.97438 * 19 18 17 39 39 H 1.07992 * 120.14243 * 359.94200 * 21 20 19 40 40 H 1.07998 * 119.79185 * 179.97438 * 22 21 20 41 41 H 1.07998 * 119.66172 * 180.30210 * 23 22 21 42 42 H 1.07999 * 120.08813 * 180.02562 * 24 23 22 43 43 H 1.09001 * 113.54528 * 88.74362 * 27 14 13 44 44 H 1.09002 * 113.54107 * 219.42323 * 27 14 13 45 45 H 1.09003 * 110.40061 * 83.48570 * 28 9 7 46 46 H 1.09004 * 110.40731 * 321.06998 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4475 2.6527 0.7002 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1388 -2.5312 0.0005 11 6 -0.4549 -4.0447 -0.0230 12 6 0.8469 -4.6531 -0.5631 13 6 1.0379 -6.1474 -0.3779 14 7 0.4452 -6.3240 -1.7158 15 6 -0.2215 -7.3047 -2.3565 16 8 -0.4499 -8.3527 -1.7903 17 6 -0.6821 -7.0994 -3.7766 18 6 -1.3970 -8.3363 -4.2565 19 6 -2.7126 -8.5583 -4.1332 20 6 -2.9637 -9.8737 -4.7342 21 6 -4.0999 -10.6599 -4.9197 22 6 -3.9895 -11.8760 -5.5350 23 6 -2.7551 -12.3308 -5.9759 24 6 -1.6208 -11.5670 -5.8015 25 6 -1.7108 -10.3288 -5.1777 26 8 -0.8073 -9.3766 -4.8709 27 6 0.9045 -4.9641 -2.0505 28 6 1.9365 -3.7334 -0.0016 29 1 -0.4851 0.8399 0.0004 30 1 -0.5585 -2.0514 -0.8836 31 1 -0.5545 -2.0800 0.9014 32 1 -1.2875 -4.2552 -0.6943 33 1 -0.6650 -4.4112 0.9818 34 1 0.4327 -6.5675 0.4253 35 1 2.0835 -6.4502 -0.3216 36 1 0.1808 -6.9076 -4.4143 37 1 -1.3615 -6.2481 -3.8187 38 1 -3.4418 -7.9015 -3.6822 39 1 -5.0628 -10.3106 -4.5778 40 1 -4.8688 -12.4863 -5.6791 41 1 -2.6827 -13.2911 -6.4647 42 1 -0.6648 -11.9303 -6.1488 43 1 1.9131 -4.9343 -2.4629 44 1 0.1878 -4.3962 -2.6438 45 1 2.2000 -4.0319 1.0131 46 1 2.8168 -3.7506 -0.6443 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001640233321.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:02 Heat of formation + Delta-G solvation = 67.557464 kcal Electronic energy + Delta-G solvation = -28314.654876 eV Core-core repulsion = 24366.097954 eV Total energy + Delta-G solvation = -3948.556922 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.64714 -40.71229 -38.55314 -37.97487 -35.72264 -33.50922 -32.32821 -31.68875 -30.62789 -29.66479 -28.86203 -27.49826 -26.04822 -25.57773 -23.76921 -23.13975 -22.08160 -21.33643 -20.35669 -19.46949 -18.38137 -17.56215 -17.21444 -17.06869 -16.72666 -16.21911 -15.87787 -15.70403 -15.32609 -14.76369 -14.44550 -14.32422 -14.16031 -13.93849 -13.77909 -13.29313 -13.07882 -12.83376 -12.56894 -12.48239 -12.35561 -12.28780 -12.00758 -11.92410 -11.87241 -11.15552 -11.05665 -10.96993 -10.72936 -10.50882 -10.34412 -10.24688 -10.15045 -9.92105 -9.75957 -9.65056 -8.83133 -8.65201 -8.63874 -8.33790 -6.89372 -5.76426 -3.10230 0.67522 1.14977 2.06916 2.43904 2.56609 2.94057 3.36600 3.42166 3.43917 3.50429 4.08264 4.32676 4.43999 4.45545 4.60262 4.68118 4.80243 4.88568 4.90199 4.94046 5.02576 5.16761 5.19531 5.23887 5.43390 5.46863 5.50517 5.60800 5.61827 5.63428 5.72332 5.76666 5.81754 5.99317 6.02204 6.10921 6.17509 6.19467 6.23607 6.40448 6.44153 6.45444 6.60378 6.65267 6.99816 7.50278 7.55638 7.73438 7.77253 8.09107 8.19536 9.16408 9.76386 10.41604 11.35135 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.029006 B = 0.001932 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.089910 B =14492.951606 C =14723.443794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.228 4.228 8 H 0.078 0.922 9 N -0.605 5.605 10 C 0.179 3.821 11 C -0.117 4.117 12 C -0.105 4.105 13 C 0.120 3.880 14 N -0.643 5.643 15 C 0.542 3.458 16 O -0.538 6.538 17 C -0.063 4.063 18 C 0.060 3.940 19 C -0.193 4.193 20 C -0.126 4.126 21 C -0.071 4.071 22 C -0.139 4.139 23 C -0.098 4.098 24 C -0.107 4.107 25 C 0.056 3.944 26 O -0.189 6.189 27 C 0.118 3.882 28 C 0.153 3.847 29 H 0.252 0.748 30 H 0.047 0.953 31 H 0.044 0.956 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.115 0.885 37 H 0.129 0.871 38 H 0.159 0.841 39 H 0.127 0.873 40 H 0.128 0.872 41 H 0.133 0.867 42 H 0.131 0.869 43 H 0.089 0.911 44 H 0.083 0.917 45 H 0.027 0.973 46 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.116 -19.708 -11.182 23.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.357 4.357 8 H 0.096 0.904 9 N -0.331 5.331 10 C 0.055 3.945 11 C -0.155 4.155 12 C -0.107 4.107 13 C -0.002 4.002 14 N -0.378 5.378 15 C 0.331 3.669 16 O -0.415 6.415 17 C -0.103 4.103 18 C 0.012 3.988 19 C -0.212 4.212 20 C -0.127 4.127 21 C -0.089 4.089 22 C -0.157 4.157 23 C -0.116 4.116 24 C -0.126 4.126 25 C 0.008 3.992 26 O -0.090 6.090 27 C -0.004 4.004 28 C 0.026 3.974 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.133 0.867 37 H 0.147 0.853 38 H 0.176 0.824 39 H 0.145 0.855 40 H 0.146 0.854 41 H 0.151 0.849 42 H 0.149 0.851 43 H 0.107 0.893 44 H 0.101 0.899 45 H 0.045 0.955 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -5.131 -20.220 -11.046 23.605 hybrid contribution 0.372 0.983 0.036 1.052 sum -4.760 -19.237 -11.010 22.670 Atomic orbital electron populations 1.69948 1.04874 1.25092 1.57009 1.24797 0.95718 0.97679 1.02217 0.86127 0.78603 0.83508 0.77551 1.21620 1.21708 1.20700 1.19042 0.90441 0.82303 1.43876 0.90381 1.44541 1.01583 0.99668 1.87336 1.21228 0.84273 0.87802 1.01230 1.22473 0.94128 0.99222 0.99713 1.22177 1.00066 0.93378 0.95046 1.22790 0.98396 0.94276 0.84742 1.49801 1.54661 1.16250 1.17107 1.19730 0.78116 0.82088 0.86962 1.90749 1.57115 1.25761 1.67864 1.20173 1.02647 0.93120 0.94333 1.21395 0.91507 0.88866 0.97034 1.22192 0.95611 0.96866 1.06519 1.19942 0.94234 0.95791 1.02752 1.20302 0.97062 0.93659 0.97867 1.20762 0.97899 0.96441 1.00596 1.20905 0.91576 0.99422 0.99662 1.19949 1.00093 0.90704 1.01805 1.19607 0.87159 0.91533 1.00888 1.83917 1.36692 1.24756 1.63672 1.22960 1.00189 0.79531 0.97761 1.21141 0.93181 0.85714 0.97321 0.93724 0.93483 0.93794 0.92080 0.91774 0.90398 0.89698 0.86679 0.85299 0.82384 0.85510 0.85412 0.84869 0.85119 0.89280 0.89887 0.95547 0.93891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.00 10.30 55.49 0.57 -25.43 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 3 Si 0.91 21.32 29.55 -169.99 -5.02 16.30 16 4 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.23 -6.01 10.28 -15.06 -0.15 -6.16 16 8 H 0.08 1.98 7.83 -52.48 -0.41 1.57 16 9 N -0.60 -14.25 3.41 -170.54 -0.58 -14.83 16 10 C 0.18 4.03 5.39 -2.83 -0.02 4.02 16 11 C -0.12 -2.00 6.40 -25.61 -0.16 -2.16 16 12 C -0.10 -1.59 1.06 -155.23 -0.16 -1.76 16 13 C 0.12 1.63 8.02 -7.48 -0.06 1.57 16 14 N -0.64 -8.74 3.70 -185.74 -0.69 -9.42 16 15 C 0.54 7.83 8.07 -10.98 -0.09 7.74 16 16 O -0.54 -9.94 16.81 5.55 0.09 -9.85 16 17 C -0.06 -0.69 6.02 -29.03 -0.17 -0.86 16 18 C 0.06 0.78 5.72 -35.80 -0.20 0.57 16 19 C -0.19 -2.40 11.01 -37.62 -0.41 -2.81 16 20 C -0.13 -1.59 6.40 -105.16 -0.67 -2.26 16 21 C -0.07 -0.71 10.05 -39.69 -0.40 -1.11 16 22 C -0.14 -1.16 9.98 -39.94 -0.40 -1.56 16 23 C -0.10 -0.81 10.01 -39.54 -0.40 -1.20 16 24 C -0.11 -1.09 10.07 -39.46 -0.40 -1.49 16 25 C 0.06 0.73 7.42 -38.47 -0.29 0.44 16 26 O -0.19 -2.67 10.58 3.95 0.04 -2.63 16 27 C 0.12 1.53 7.78 -7.33 -0.06 1.47 16 28 C 0.15 2.79 6.70 -3.22 -0.02 2.77 16 29 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 30 H 0.05 1.17 7.38 -51.93 -0.38 0.79 16 31 H 0.04 1.12 7.49 -51.93 -0.39 0.73 16 32 H 0.06 0.97 8.07 -51.93 -0.42 0.55 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.08 1.08 8.13 -51.93 -0.42 0.66 16 35 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.13 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.16 1.63 8.06 -52.48 -0.42 1.20 16 39 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 40 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 41 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 42 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 43 H 0.09 1.05 8.06 -51.93 -0.42 0.63 16 44 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.04 0.74 8.00 -51.93 -0.42 0.33 16 LS Contribution 383.97 15.07 5.79 5.79 Total: -1.00 -33.41 383.97 -10.61 -44.01 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -6.64 Total: -0.83 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: -4.16 Total: -3.11 kcal Atomic # 7 Polarization: -48.98 SS G_CDS: -0.70 Total: -49.68 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.14 Total: -12.48 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.41 -10.61 -44.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001640233321.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.572 kcal (2) G-P(sol) polarization free energy of solvation -33.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds