Wall clock time and date at job start Tue Mar 31 2020 22:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86805 * 119.99653 * 2 1 4 4 H 1.48498 * 109.47071 * 270.00103 * 3 2 1 5 5 H 1.48503 * 109.46870 * 30.00573 * 3 2 1 6 6 H 1.48503 * 109.46822 * 150.00148 * 3 2 1 7 7 C 1.38809 * 120.00370 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00153 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99948 * 359.97438 * 7 2 1 10 10 C 1.47145 * 125.58075 * 359.97438 * 9 7 2 11 11 C 1.54634 * 107.37763 * 179.10207 * 10 9 7 12 12 C 1.53502 * 102.70479 * 339.38576 * 11 10 9 13 13 C 1.51782 * 117.00216 * 164.16241 * 12 11 10 14 14 N 1.47389 * 87.51636 * 92.93048 * 13 12 11 15 15 C 1.34786 * 135.85329 * 205.66548 * 14 13 12 16 16 O 1.21284 * 119.99533 * 359.97438 * 15 14 13 17 17 C 1.50699 * 120.00035 * 180.02562 * 15 14 13 18 18 C 1.50704 * 109.46841 * 180.02562 * 17 15 14 19 19 C 1.33990 * 124.92202 * 89.99868 * 18 17 15 20 20 C 1.46787 * 106.18608 * 179.97438 * 19 18 17 21 21 C 1.39406 * 134.37016 * 180.02562 * 20 19 18 22 22 C 1.36736 * 119.71514 * 180.02562 * 21 20 19 23 23 C 1.38743 * 120.41735 * 359.95255 * 22 21 20 24 24 C 1.37855 * 120.68498 * 0.02562 * 23 22 21 25 25 C 1.38944 * 119.81775 * 0.02562 * 24 23 22 26 26 O 1.34443 * 124.92335 * 269.97229 * 18 17 15 27 27 C 1.47386 * 88.29585 * 25.92189 * 14 13 12 28 28 C 1.47758 * 125.58278 * 179.97438 * 9 7 2 29 29 H 0.96992 * 120.00678 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.86555 * 59.65809 * 10 9 7 31 31 H 1.08995 * 109.86909 * 298.55444 * 10 9 7 32 32 H 1.09004 * 110.76512 * 221.07598 * 11 10 9 33 33 H 1.08998 * 110.75897 * 97.69025 * 11 10 9 34 34 H 1.08996 * 113.54217 * 338.26758 * 13 12 11 35 35 H 1.08998 * 113.61079 * 207.59619 * 13 12 11 36 36 H 1.08996 * 109.47045 * 60.00282 * 17 15 14 37 37 H 1.09003 * 109.47090 * 299.99721 * 17 15 14 38 38 H 1.08003 * 126.91279 * 359.97438 * 19 18 17 39 39 H 1.07992 * 120.14243 * 359.94200 * 21 20 19 40 40 H 1.07998 * 119.79185 * 179.97438 * 22 21 20 41 41 H 1.07998 * 119.66172 * 180.30210 * 23 22 21 42 42 H 1.07999 * 120.08813 * 180.02562 * 24 23 22 43 43 H 1.09001 * 113.54528 * 88.74362 * 27 14 13 44 44 H 1.09002 * 113.54107 * 219.42323 * 27 14 13 45 45 H 1.09003 * 110.40061 * 83.48570 * 28 9 7 46 46 H 1.09004 * 110.40731 * 321.06998 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4475 2.6527 0.7002 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1388 -2.5312 0.0005 11 6 -0.4549 -4.0447 -0.0230 12 6 0.8469 -4.6531 -0.5631 13 6 1.0379 -6.1474 -0.3779 14 7 0.4452 -6.3240 -1.7158 15 6 -0.2215 -7.3047 -2.3565 16 8 -0.4499 -8.3527 -1.7903 17 6 -0.6821 -7.0994 -3.7766 18 6 -1.3970 -8.3363 -4.2565 19 6 -2.7126 -8.5583 -4.1332 20 6 -2.9637 -9.8737 -4.7342 21 6 -4.0999 -10.6599 -4.9197 22 6 -3.9895 -11.8760 -5.5350 23 6 -2.7551 -12.3308 -5.9759 24 6 -1.6208 -11.5670 -5.8015 25 6 -1.7108 -10.3288 -5.1777 26 8 -0.8073 -9.3766 -4.8709 27 6 0.9045 -4.9641 -2.0505 28 6 1.9365 -3.7334 -0.0016 29 1 -0.4851 0.8399 0.0004 30 1 -0.5585 -2.0514 -0.8836 31 1 -0.5545 -2.0800 0.9014 32 1 -1.2875 -4.2552 -0.6943 33 1 -0.6650 -4.4112 0.9818 34 1 0.4327 -6.5675 0.4253 35 1 2.0835 -6.4502 -0.3216 36 1 0.1808 -6.9076 -4.4143 37 1 -1.3615 -6.2481 -3.8187 38 1 -3.4418 -7.9015 -3.6822 39 1 -5.0628 -10.3106 -4.5778 40 1 -4.8688 -12.4863 -5.6791 41 1 -2.6827 -13.2911 -6.4647 42 1 -0.6648 -11.9303 -6.1488 43 1 1.9131 -4.9343 -2.4629 44 1 0.1878 -4.3962 -2.6438 45 1 2.2000 -4.0319 1.0131 46 1 2.8168 -3.7506 -0.6443 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001640233321.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:01 Heat of formation + Delta-G solvation = 48.558578 kcal Electronic energy + Delta-G solvation = -28315.478730 eV Core-core repulsion = 24366.097954 eV Total energy + Delta-G solvation = -3949.380776 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.49738 -41.90337 -39.72986 -38.77806 -37.30096 -34.41239 -34.06718 -32.62886 -31.37315 -31.18440 -30.29293 -28.53594 -27.21292 -26.99832 -25.36936 -23.96328 -22.87073 -22.22250 -22.09504 -20.62635 -19.66802 -18.56966 -18.36903 -18.19026 -17.92443 -17.22288 -16.87018 -16.82584 -16.62327 -16.22173 -15.73372 -15.58444 -15.30413 -15.05994 -14.68918 -14.22357 -14.11896 -14.07094 -13.79393 -13.71535 -13.62559 -13.27327 -13.22638 -13.14817 -12.84893 -12.75490 -12.67018 -12.23600 -12.01322 -11.91715 -11.87543 -11.79906 -11.67104 -11.22353 -11.19164 -10.89715 -10.64815 -9.76905 -9.60995 -9.14866 -8.82852 -7.79601 -5.13873 -0.09904 0.38321 1.18709 1.48669 1.50643 1.51389 1.59763 1.61131 1.92363 2.53808 2.76041 3.24362 3.26438 3.38553 3.49946 3.61743 3.69466 3.83732 4.01951 4.06712 4.08698 4.11950 4.18638 4.24433 4.34898 4.43196 4.45478 4.54345 4.59567 4.62788 4.73178 4.73785 4.76144 4.88164 4.91745 4.96097 5.06895 5.19851 5.21908 5.22915 5.32667 5.44987 5.49656 5.53010 5.71423 5.73910 5.83542 6.16711 6.24947 6.64673 6.99790 7.16113 7.83597 8.47499 9.30720 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.029006 B = 0.001932 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.089910 B =14492.951606 C =14723.443794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.068 4.068 3 Si 0.974 3.026 4 H -0.286 1.286 5 H -0.300 1.300 6 H -0.270 1.270 7 C -0.233 4.233 8 H 0.086 0.914 9 N -0.625 5.625 10 C 0.190 3.810 11 C -0.103 4.103 12 C -0.100 4.100 13 C 0.124 3.876 14 N -0.640 5.640 15 C 0.541 3.459 16 O -0.584 6.584 17 C -0.055 4.055 18 C 0.039 3.961 19 C -0.203 4.203 20 C -0.155 4.155 21 C -0.084 4.084 22 C -0.135 4.135 23 C -0.089 4.089 24 C -0.123 4.123 25 C 0.022 3.978 26 O -0.210 6.210 27 C 0.125 3.875 28 C 0.151 3.849 29 H 0.245 0.755 30 H 0.016 0.984 31 H 0.002 0.998 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.107 0.893 36 H 0.137 0.863 37 H 0.155 0.845 38 H 0.172 0.828 39 H 0.144 0.856 40 H 0.161 0.839 41 H 0.169 0.831 42 H 0.145 0.855 43 H 0.111 0.889 44 H 0.090 0.910 45 H 0.031 0.969 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.690 -21.528 -12.564 25.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.261 4.261 3 Si 0.803 3.197 4 H -0.213 1.213 5 H -0.227 1.227 6 H -0.195 1.195 7 C -0.362 4.362 8 H 0.104 0.896 9 N -0.351 5.351 10 C 0.064 3.936 11 C -0.141 4.141 12 C -0.102 4.102 13 C 0.002 3.998 14 N -0.374 5.374 15 C 0.332 3.668 16 O -0.465 6.465 17 C -0.094 4.094 18 C -0.008 4.008 19 C -0.222 4.222 20 C -0.156 4.156 21 C -0.102 4.102 22 C -0.153 4.153 23 C -0.107 4.107 24 C -0.141 4.141 25 C -0.025 4.025 26 O -0.112 6.112 27 C 0.003 3.997 28 C 0.026 3.974 29 H 0.054 0.946 30 H 0.034 0.966 31 H 0.020 0.980 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.125 0.875 36 H 0.155 0.845 37 H 0.173 0.827 38 H 0.190 0.810 39 H 0.162 0.838 40 H 0.179 0.821 41 H 0.187 0.813 42 H 0.163 0.837 43 H 0.129 0.871 44 H 0.109 0.891 45 H 0.048 0.952 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.672 -22.056 -12.434 25.746 hybrid contribution 0.218 1.440 0.483 1.534 sum -4.454 -20.616 -11.950 24.242 Atomic orbital electron populations 1.70168 1.06215 1.25048 1.58724 1.25585 0.96520 1.00849 1.03105 0.85142 0.77638 0.79540 0.77398 1.21300 1.22715 1.19461 1.19450 0.91079 0.83542 1.42154 0.89626 1.44823 1.02229 1.01045 1.87049 1.20925 0.83898 0.91005 0.97731 1.22269 0.95789 0.95277 1.00743 1.21988 0.97429 0.93839 0.96895 1.22802 0.99683 0.92430 0.84898 1.49773 1.54262 1.16318 1.17053 1.20273 0.77259 0.81293 0.87956 1.90729 1.58895 1.27639 1.69206 1.20256 1.03944 0.93107 0.92096 1.21771 0.91997 0.89402 0.97661 1.22522 0.96009 0.97311 1.06349 1.20295 0.95128 0.96383 1.03753 1.20655 0.97102 0.94229 0.98190 1.21228 0.99207 0.95915 0.98927 1.21403 0.90784 1.00230 0.98284 1.20359 1.01724 0.90127 1.01886 1.20160 0.87424 0.92515 1.02353 1.83865 1.37606 1.25432 1.64311 1.23020 1.01662 0.78851 0.96121 1.21303 0.94400 0.83684 0.98051 0.94614 0.96577 0.98008 0.90633 0.91256 0.90751 0.87540 0.84477 0.82709 0.81044 0.83846 0.82133 0.81329 0.83697 0.87127 0.89145 0.95156 0.92304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.49 10.30 21.65 0.22 -55.26 16 2 C -0.07 -3.71 5.49 84.86 0.47 -3.24 16 3 Si 0.97 44.25 29.55 68.60 2.03 46.28 16 4 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16 5 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 6 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 7 C -0.23 -12.26 10.28 84.03 0.86 -11.39 16 8 H 0.09 4.26 7.83 -2.91 -0.02 4.23 16 9 N -0.62 -29.42 3.41 -693.46 -2.36 -31.78 16 10 C 0.19 8.73 5.39 86.81 0.47 9.20 16 11 C -0.10 -3.43 6.40 31.32 0.20 -3.23 16 12 C -0.10 -2.83 1.06 -52.63 -0.06 -2.89 16 13 C 0.12 3.07 8.02 83.67 0.67 3.74 16 14 N -0.64 -15.92 3.70 -859.93 -3.18 -19.10 16 15 C 0.54 14.91 8.07 87.66 0.71 15.61 16 16 O -0.58 -21.47 16.81 -3.04 -0.05 -21.52 16 17 C -0.06 -1.12 6.02 29.10 0.18 -0.94 16 18 C 0.04 1.01 5.72 24.72 0.14 1.16 16 19 C -0.20 -5.07 11.01 23.54 0.26 -4.81 16 20 C -0.15 -3.89 6.40 -20.21 -0.13 -4.02 16 21 C -0.08 -1.58 10.05 22.20 0.22 -1.36 16 22 C -0.14 -1.91 9.98 22.04 0.22 -1.69 16 23 C -0.09 -1.25 10.01 22.30 0.22 -1.03 16 24 C -0.12 -2.40 10.07 22.35 0.23 -2.17 16 25 C 0.02 0.59 7.42 22.99 0.17 0.76 16 26 O -0.21 -6.06 10.58 -8.80 -0.09 -6.15 16 27 C 0.13 2.90 7.78 83.76 0.65 3.55 16 28 C 0.15 5.25 6.70 86.22 0.58 5.83 16 29 H 0.24 14.00 8.31 -92.71 -0.77 13.23 16 30 H 0.02 0.83 7.38 -2.39 -0.02 0.81 16 31 H 0.00 0.09 7.49 -2.39 -0.02 0.07 16 32 H 0.08 2.31 8.07 -2.38 -0.02 2.29 16 33 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.07 1.93 8.13 -2.39 -0.02 1.91 16 35 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.14 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.16 2.25 8.14 -2.39 -0.02 2.23 16 38 H 0.17 3.50 8.06 -2.91 -0.02 3.47 16 39 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 40 H 0.16 1.17 8.06 -2.91 -0.02 1.15 16 41 H 0.17 1.09 8.06 -2.91 -0.02 1.07 16 42 H 0.15 2.23 8.06 -2.91 -0.02 2.20 16 43 H 0.11 2.17 8.06 -2.39 -0.02 2.15 16 44 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.03 1.05 8.14 -2.39 -0.02 1.04 16 46 H 0.06 1.88 8.00 -2.38 -0.02 1.86 16 Total: -1.00 -75.97 383.97 3.60 -72.36 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: 0.98 Total: 12.11 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: 6.06 Total: 3.07 kcal Atomic # 7 Polarization: -100.83 SS G_CDS: -5.32 Total: -106.15 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -0.14 Total: -27.67 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -75.97 3.60 -72.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001640233321.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.922 kcal (2) G-P(sol) polarization free energy of solvation -75.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds