Wall clock time and date at job start Tue Mar 31 2020 22:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31352 * 1 3 3 Si 1.86794 * 119.99775 * 2 1 4 4 H 1.48497 * 109.46923 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47424 * 300.00211 * 3 2 1 6 6 H 1.48498 * 109.47130 * 60.00092 * 3 2 1 7 7 C 1.39004 * 119.99793 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00069 * 199.88565 * 7 2 1 9 9 N 1.36895 * 120.00518 * 19.88210 * 7 2 1 10 10 C 1.38210 * 125.62308 * 214.27910 * 9 7 2 11 11 C 1.46891 * 125.43556 * 0.02562 * 10 9 7 12 12 O 1.21666 * 120.00002 * 15.68285 * 11 10 9 13 13 N 1.34770 * 120.00001 * 195.68230 * 11 10 9 14 14 C 1.50247 * 130.83816 * 6.62848 * 13 11 10 15 15 C 1.57787 * 100.16241 * 125.52952 * 14 13 11 16 16 C 1.54849 * 103.27446 * 33.70422 * 15 14 13 17 17 C 1.50243 * 130.84141 * 186.97115 * 13 11 10 18 18 C 1.52998 * 115.85355 * 0.31617 * 17 13 11 19 19 O 1.42908 * 109.46847 * 180.02562 * 18 17 13 20 20 C 1.55838 * 101.05256 * 125.99312 * 17 13 11 21 21 C 1.54224 * 103.56706 * 32.85106 * 20 17 13 22 22 C 1.36115 * 109.12653 * 179.97438 * 10 9 7 23 23 C 1.41705 * 107.75364 * 0.02562 * 22 10 9 24 24 C 1.40013 * 133.35453 * 179.97438 * 23 22 10 25 25 C 1.36580 * 119.83305 * 180.02562 * 24 23 22 26 26 C 1.38854 * 120.59583 * 359.97360 * 25 24 23 27 27 C 1.37841 * 120.63535 * 0.25432 * 26 25 24 28 28 C 1.37836 * 125.61371 * 34.28020 * 9 7 2 29 29 H 0.96998 * 120.00119 * 1.42904 * 1 2 3 30 30 H 1.08996 * 115.85529 * 0.39508 * 14 13 11 31 31 H 1.09002 * 111.15197 * 275.05625 * 15 14 13 32 32 H 1.08998 * 110.39906 * 151.99211 * 15 14 13 33 33 H 1.08998 * 110.62780 * 240.98808 * 16 15 14 34 34 H 1.09006 * 110.62422 * 117.96856 * 16 15 14 35 35 H 1.09000 * 109.47839 * 300.00072 * 18 17 13 36 36 H 1.08999 * 109.47259 * 60.00614 * 18 17 13 37 37 H 0.96702 * 113.99898 * 180.02562 * 19 18 17 38 38 H 1.09004 * 110.62426 * 151.42824 * 20 17 13 39 39 H 1.08996 * 110.62680 * 274.45086 * 20 17 13 40 40 H 1.09000 * 110.49838 * 241.50648 * 21 20 17 41 41 H 1.09001 * 110.77835 * 118.62301 * 21 20 17 42 42 H 1.08006 * 126.12459 * 179.97438 * 22 10 9 43 43 H 1.08002 * 120.08265 * 0.03285 * 24 23 22 44 44 H 1.07996 * 119.69882 * 180.02562 * 25 24 23 45 45 H 1.08002 * 119.67535 * 180.02562 * 26 25 24 46 46 H 1.08005 * 120.09524 * 179.70065 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2474 1.6177 0.0000 4 1 3.7074 1.3464 -0.0006 5 1 1.8887 2.3965 -1.2124 6 1 1.8887 2.3964 1.2125 7 6 2.0085 -1.2038 -0.0005 8 1 3.0403 -1.2319 0.3176 9 7 1.3853 -2.3539 -0.4042 10 6 1.6125 -3.6161 0.1111 11 6 2.5633 -3.9400 1.1828 12 8 3.0155 -3.0538 1.8832 13 7 2.9347 -5.2187 1.3904 14 6 2.6410 -6.4667 0.6070 15 6 4.1082 -6.9921 0.3599 16 6 4.8597 -6.5653 1.6448 17 6 3.7644 -5.8364 2.4801 18 6 4.2822 -4.8742 3.5511 19 8 5.0498 -5.6007 4.5130 20 6 2.8056 -6.9550 2.9880 21 6 2.0434 -7.3826 1.7173 22 6 0.8137 -4.5109 -0.5323 23 6 0.0511 -3.7982 -1.4908 24 6 -0.9178 -4.1816 -2.4261 25 6 -1.4904 -3.2419 -3.2351 26 6 -1.1210 -1.9069 -3.1391 27 6 -0.1662 -1.5059 -2.2294 28 6 0.4278 -2.4439 -1.3916 29 1 -0.4850 0.8398 -0.0209 30 1 2.0306 -6.3345 -0.2863 31 1 4.5515 -6.5226 -0.5182 32 1 4.1107 -8.0771 0.2561 33 1 5.6758 -5.8841 1.4039 34 1 5.2326 -7.4389 2.1796 35 1 4.9098 -4.1148 3.0846 36 1 3.4385 -4.3940 4.0467 37 1 5.4101 -5.0527 5.2237 38 1 3.3734 -7.7916 3.3954 39 1 2.1147 -6.5597 3.7325 40 1 0.9753 -7.1990 1.8329 41 1 2.2290 -8.4324 1.4899 42 1 0.7696 -5.5739 -0.3463 43 1 -1.2117 -5.2176 -2.5074 44 1 -2.2378 -3.5399 -3.9555 45 1 -1.5837 -1.1762 -3.7860 46 1 0.1180 -0.4659 -2.1655 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646292158.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:26 Heat of formation + Delta-G solvation = 11.738025 kcal Electronic energy + Delta-G solvation = -30679.230595 eV Core-core repulsion = 26728.253160 eV Total energy + Delta-G solvation = -3950.977435 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.88133 -40.06082 -37.44026 -36.50106 -35.73185 -33.74680 -31.44160 -30.61764 -30.49067 -30.27858 -28.98095 -27.75173 -25.37161 -24.86979 -23.59209 -22.19080 -21.68829 -20.78992 -19.96111 -19.30277 -18.28476 -17.67289 -17.11089 -16.22366 -15.74979 -15.52499 -15.41014 -15.20436 -14.75242 -14.45068 -14.17907 -13.75410 -13.33332 -13.22562 -13.11386 -12.95377 -12.86145 -12.62784 -12.40053 -12.26628 -12.17316 -11.77407 -11.63272 -11.36240 -11.31593 -11.26320 -11.13740 -10.74160 -10.65876 -10.53393 -10.46823 -10.28555 -10.13933 -9.76987 -9.75690 -9.09956 -9.06665 -8.62359 -8.41440 -7.17689 -6.82595 -6.54678 -4.36496 1.85695 2.78038 2.95439 3.03017 3.05926 3.12550 3.14902 3.84571 4.16642 4.29619 4.49650 4.61832 4.66462 4.78826 4.87026 5.04109 5.11138 5.13080 5.23027 5.31083 5.38388 5.41979 5.50365 5.78118 5.79931 5.85241 5.90639 5.95158 5.96416 5.99277 6.01909 6.18995 6.21390 6.22499 6.31223 6.39755 6.53277 6.59311 6.76279 6.92368 7.04400 7.11973 7.19221 7.49608 7.59052 7.60675 7.69502 7.95767 8.02453 8.13846 8.42326 8.74372 8.97056 9.32842 10.20976 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011603 B = 0.004688 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.577507 B = 5971.478364 C = 7894.914531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.049 3.951 3 Si 0.929 3.071 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.274 1.274 7 C -0.330 4.330 8 H 0.116 0.884 9 N -0.227 5.227 10 C -0.021 4.021 11 C 0.613 3.387 12 O -0.533 6.533 13 N -0.622 5.622 14 C 0.113 3.887 15 C -0.132 4.132 16 C -0.117 4.117 17 C 0.162 3.838 18 C 0.105 3.895 19 O -0.574 6.574 20 C -0.117 4.117 21 C -0.132 4.132 22 C -0.217 4.217 23 C -0.123 4.123 24 C -0.094 4.094 25 C -0.155 4.155 26 C -0.157 4.157 27 C -0.045 4.045 28 C 0.080 3.920 29 H 0.281 0.719 30 H 0.137 0.863 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.382 0.618 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.133 0.867 43 H 0.102 0.898 44 H 0.101 0.899 45 H 0.104 0.896 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.895 -11.569 1.605 12.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.163 4.163 3 Si 0.753 3.247 4 H -0.185 1.185 5 H -0.197 1.197 6 H -0.199 1.199 7 C -0.459 4.459 8 H 0.133 0.867 9 N 0.113 4.887 10 C -0.139 4.139 11 C 0.406 3.594 12 O -0.410 6.410 13 N -0.359 5.359 14 C 0.011 3.989 15 C -0.171 4.171 16 C -0.156 4.156 17 C 0.078 3.922 18 C 0.027 3.973 19 O -0.379 6.379 20 C -0.156 4.156 21 C -0.171 4.171 22 C -0.244 4.244 23 C -0.128 4.128 24 C -0.113 4.113 25 C -0.174 4.174 26 C -0.178 4.178 27 C -0.064 4.064 28 C -0.035 4.035 29 H 0.092 0.908 30 H 0.155 0.845 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.228 0.772 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.150 0.850 43 H 0.120 0.880 44 H 0.119 0.881 45 H 0.122 0.878 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 4.951 -10.924 1.765 12.122 hybrid contribution 0.201 1.387 0.503 1.489 sum 5.151 -9.536 2.268 11.073 Atomic orbital electron populations 1.70061 1.06480 1.29265 1.38778 1.25617 0.95370 1.00737 0.94574 0.85827 0.80372 0.80010 0.78481 1.18463 1.19669 1.19931 1.20006 0.97525 0.82990 1.45369 0.86689 1.39976 1.24623 1.04299 1.19800 1.19443 1.05225 0.87278 1.01906 1.16850 0.79705 0.79886 0.82987 1.90763 1.55886 1.45333 1.49011 1.50165 1.52552 1.05862 1.27365 1.24508 0.96271 0.82372 0.95771 1.23285 0.95223 1.00545 0.98010 1.22797 0.97012 1.00042 0.95713 1.22591 0.91204 0.90786 0.87660 1.21687 0.95029 0.91860 0.88748 1.86330 1.71898 1.39499 1.40152 1.22708 0.97830 0.97706 0.97347 1.22824 1.00354 0.99043 0.94863 1.20559 1.03461 0.97413 1.02948 1.17946 1.01213 0.93022 1.00587 1.19995 0.97154 0.97880 0.96289 1.20260 1.02175 0.93530 1.01400 1.20537 1.00453 0.95562 1.01260 1.20199 0.95217 0.98006 0.93005 1.18070 0.97506 0.93996 0.93899 0.90850 0.84532 0.91041 0.90691 0.91535 0.90479 0.92044 0.92487 0.77155 0.90408 0.91493 0.90890 0.90494 0.84999 0.87973 0.88073 0.87818 0.86706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -21.77 10.55 55.50 0.59 -21.18 16 2 C 0.05 1.28 4.39 -17.47 -0.08 1.20 16 3 Si 0.93 19.78 29.60 -169.99 -5.03 14.75 16 4 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 5 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 6 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 7 C -0.33 -9.03 8.83 -15.01 -0.13 -9.17 16 8 H 0.12 3.20 7.10 -52.48 -0.37 2.83 16 9 N -0.23 -6.10 2.86 -56.08 -0.16 -6.26 16 10 C -0.02 -0.51 6.70 -82.25 -0.55 -1.06 16 11 C 0.61 13.78 7.85 -12.76 -0.10 13.68 16 12 O -0.53 -13.38 13.83 5.22 0.07 -13.30 16 13 N -0.62 -10.82 2.88 -139.66 -0.40 -11.22 16 14 C 0.11 1.54 4.43 -61.69 -0.27 1.27 16 15 C -0.13 -1.54 6.54 -23.14 -0.15 -1.69 16 16 C -0.12 -1.48 6.01 -24.24 -0.15 -1.62 16 17 C 0.16 2.38 1.47 -126.69 -0.19 2.20 16 18 C 0.10 1.58 5.47 37.16 0.20 1.78 16 19 O -0.57 -7.02 13.47 -35.23 -0.47 -7.49 16 20 C -0.12 -1.47 5.98 -24.58 -0.15 -1.62 16 21 C -0.13 -1.52 6.43 -24.57 -0.16 -1.68 16 22 C -0.22 -4.69 9.42 -39.02 -0.37 -5.05 16 23 C -0.12 -2.86 6.16 -106.89 -0.66 -3.51 16 24 C -0.09 -1.90 10.06 -39.52 -0.40 -2.30 16 25 C -0.15 -3.00 9.97 -39.95 -0.40 -3.39 16 26 C -0.16 -3.28 10.02 -39.50 -0.40 -3.68 16 27 C -0.04 -1.08 8.46 -39.41 -0.33 -1.41 16 28 C 0.08 2.06 6.11 -83.83 -0.51 1.55 16 29 H 0.28 6.88 8.31 -40.82 -0.34 6.54 16 30 H 0.14 1.89 4.78 -51.93 -0.25 1.64 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 0.68 7.91 -51.93 -0.41 0.27 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.08 0.85 7.85 -51.93 -0.41 0.44 16 35 H 0.06 1.02 7.69 -51.93 -0.40 0.62 16 36 H 0.06 0.94 7.97 -51.93 -0.41 0.53 16 37 H 0.38 3.02 9.12 45.56 0.42 3.44 16 38 H 0.08 0.86 7.85 -51.93 -0.41 0.45 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.08 0.69 7.91 -51.93 -0.41 0.28 16 42 H 0.13 2.34 5.14 -52.48 -0.27 2.07 16 43 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 44 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 45 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 46 H 0.12 2.86 6.14 -52.48 -0.32 2.53 16 LS Contribution 363.31 15.07 5.48 5.48 Total: -1.00 -31.91 363.31 -10.06 -41.97 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -5.34 Total: 11.78 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: -4.78 Total: -14.52 kcal Atomic # 7 Polarization: -38.69 SS G_CDS: 0.02 Total: -38.66 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -0.40 Total: -20.79 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.03 Total: 14.75 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.91 -10.06 -41.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646292158.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.712 kcal (2) G-P(sol) polarization free energy of solvation -31.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds